Mock Version: 2.6 Mock Version: 2.6 Mock Version: 2.6 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f33-build-23342882-2244616/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1602460800 Wrote: /builddir/build/SRPMS/R-4.0.3-1.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f33-build-23342882-2244616/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1602460800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lYPxDT + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-4.0.3 + /usr/bin/gzip -dc /builddir/build/SOURCES/R-4.0.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd R-4.0.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch):' Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fixpath --fuzz=0 patching file src/scripts/javareconf.in Hunk #1 succeeded at 79 (offset 1 line). + cat + chmod +x /builddir/build/BUILD/R-4.0.3/R-prov + cat + chmod +x /builddir/build/BUILD/R-4.0.3/R-req + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.2rUaFT + umask 022 + cd /builddir/build/BUILD + cd R-4.0.3 + echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}' + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open + case "aarch64" in + export CC=gcc + CC=gcc + export CXX=g++ + CXX=g++ + export F77=gfortran + F77=gfortran + export FC=gfortran + FC=gfortran + export 'FCFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls' + export 'FFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls' + sed -i '/"checking whether the BLAS is complete/i r_cv_complete_blas=yes' configure + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls' + export FCFLAGS + tee CONFIGURE.log + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2020-10-13 15:37:43.870808677 +0000 +++ ./configure 2020-10-13 15:37:43.980807374 +0000 @@ -2545,7 +2545,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2020-10-13 15:37:43.980807374 +0000 +++ ./configure 2020-10-13 15:37:44.030806782 +0000 @@ -48679,10 +48679,7 @@ exit (sig != SIGFPE); } -int x = 1; -int y = 0; -int z; -int nan; +volatile int x = 1; volatile int y = 0; volatile int z, nan; int main () { + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2020-10-13 15:37:44.030806782 +0000 +++ ./configure 2020-10-13 15:37:44.060806426 +0000 @@ -10567,7 +10567,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="sed -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -53353,7 +53353,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./tools/config.guess ++ basename ./tools/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess '/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./tools/config.sub ++ basename ./tools/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub '/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh + ./configure --build=aarch64-redhat-linux-gnu --host=aarch64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-system-tre --with-system-valgrind-headers --with-lapack --with-blas=flexiblas --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling MAKEINFO=texi2any rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... aarch64-redhat-linux-gnu checking host system type... aarch64-redhat-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... no checking for byacc... no checking for yacc... no checking for notangle... false checking for realpath... /usr/bin/realpath checking for aarch64-redhat-linux-gnu-pkg-config... /usr/bin/aarch64-redhat-linux-gnu-pkg-config checking for aarch64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking for aarch64-redhat-linux-gnu-gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for aarch64-redhat-linux-gnu-gcc... no checking for aarch64-redhat-linux-gnu-objcc... no checking for aarch64-redhat-linux-gnu-objc... no checking for aarch64-redhat-linux-gnu-cc... no checking for aarch64-redhat-linux-gnu-CC... no checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-redhat-linux-gnu file names to aarch64-redhat-linux-gnu format... func_convert_file_noop checking how to convert aarch64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for aarch64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for aarch64-redhat-linux-gnu-strip... no checking for strip... strip checking for aarch64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 10523: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for aarch64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_callback_sigcleanup exists and is declared... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/aarch64-redhat-linux/10 -L/usr/lib/gcc/aarch64-redhat-linux/10/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/10/../../.. -lgfortran -lm checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/aarch64-redhat-linux/10 -L/usr/lib/gcc/aarch64-redhat-linux/10/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 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declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point 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for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -lflexiblas... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... (cached) yes checking for dpstrf_... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking X11/Xmu/Atoms.h usability... yes checking X11/Xmu/Atoms.h presence... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking tk.h usability... yes checking tk.h presence... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking rpc/types.h usability... no checking rpc/types.h presence... no checking for rpc/types.h... no checking tirpc/rpc/types.h usability... no checking tirpc/rpc/types.h presence... no checking for tirpc/rpc/types.h... no checking for XDR support... no checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking pcre2.h usability... yes checking pcre2.h presence... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for tre_regncompb in -ltre... yes checking tre/tre.h usability... yes checking tre/tre.h presence... yes checking for tre/tre.h... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.71.1 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.28.0... checking if libcurl supports https... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking tiffio.h usability... yes checking tiffio.h presence... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for aarch64-redhat-linux-gnu-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking R is now configured for aarch64-redhat-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls Default C++ compiler: g++ -std=gnu++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection C++14 compiler: g++ -std=gnu++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection C++17 compiler: g++ -std=gnu++17 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection C++20 compiler: g++ -std=gnu++20 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(in blas), tre, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling, static HTML Capabilities skipped: Options not enabled: shared BLAS Recommended packages: yes + cat CONFIGURE.log + grep -A30 'R is now' - + make V=1 make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/etc' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/share' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/scripts' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/include' mkdir -p -- ../../include make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/extra' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/extra/xdr' making xdr.d from xdr.c making xdr_float.d from xdr_float.c making xdr_mem.d from xdr_mem.c making xdr_stdio.d from xdr_stdio.c make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr.c -o xdr.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr_float.c -o xdr_float.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o ranlib libxdr.a make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/extra/xdr' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/extra/xdr' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c uncmin.c -o uncmin.o gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dchdc.f -o dchdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dchdc.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dchdc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dpbfa.f -o dpbfa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dpbfa.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dpbfa.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dpbsl.f -o dpbsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dpbsl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dpbsl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dpoco.f -o dpoco.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dpoco.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dpoco.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dpodi.f -o dpodi.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dpodi.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dpodi.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dpofa.f -o dpofa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dpofa.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dpofa.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dposl.f -o dposl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dposl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dposl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dqrdc.f -o dqrdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dqrdc.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dqrdc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dqrdc2.f -o dqrdc2.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dqrdc2.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dqrdc2.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dqrls.f -o dqrls.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dqrls.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dqrls.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dqrsl.f -o dqrsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dqrsl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dqrsl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dqrutl.f -o dqrutl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dqrutl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dqrutl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dsvdc.f -o dsvdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dsvdc.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dsvdc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dtrco.f -o dtrco.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dtrco.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dtrco.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dtrsl.f -o dtrsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dtrsl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dtrsl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/appl' #@make install-Linpack make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/nmath' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/unix' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -DR_HOME='"/builddir/build/BUILD/R-4.0.3"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/unix' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rdynload.c -o Rdynload.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Renviron.c -o Renviron.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c RNG.c -o RNG.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agrep.c -o agrep.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c altclasses.c -o altclasses.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c altrep.c -o altrep.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c apply.c -o apply.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c arithmetic.c -o arithmetic.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c array.c -o array.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c attrib.c -o attrib.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bind.c -o bind.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c builtin.c -o builtin.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c character.c -o character.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coerce.c -o coerce.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c colors.c -o colors.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c complex.c -o complex.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c connections.c -o connections.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c context.c -o context.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cum.c -o cum.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dcf.c -o dcf.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c datetime.c -o datetime.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c debug.c -o debug.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c deparse.c -o deparse.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devices.c -o devices.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dotcode.c -o dotcode.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dounzip.c -o dounzip.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dstruct.c -o dstruct.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c duplicate.c -o duplicate.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c edit.c -o edit.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c engine.c -o engine.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c envir.c -o envir.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c errors.c -o errors.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c eval.c -o eval.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c format.c -o format.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gevents.c -o gevents.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gram.c -o gram.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gram-ex.c -o gram-ex.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c graphics.c -o graphics.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c grep.c -o grep.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c identical.c -o identical.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c inlined.c -o inlined.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c inspect.c -o inspect.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c internet.c -o internet.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c iosupport.c -o iosupport.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lapack.c -o lapack.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c list.c -o list.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c localecharset.c -o localecharset.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c logic.c -o logic.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c main.c -o main.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mapply.c -o mapply.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c match.c -o match.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c memory.c -o memory.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c names.c -o names.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c objects.c -o objects.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c options.c -o options.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c paste.c -o paste.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c platform.c -o platform.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plot.c -o plot.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plot3d.c -o plot3d.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plotmath.c -o plotmath.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c print.c -o print.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c printarray.c -o printarray.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c printvector.c -o printvector.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c printutils.c -o printutils.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qsort.c -o qsort.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c radixsort.c -o radixsort.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c random.c -o random.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c raw.c -o raw.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c registration.c -o registration.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c relop.c -o relop.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlocale.c -o rlocale.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c saveload.c -o saveload.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c scan.c -o scan.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c seq.c -o seq.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c serialize.c -o serialize.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sort.c -o sort.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c source.c -o source.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c split.c -o split.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sprintf.c -o sprintf.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c startup.c -o startup.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c subassign.c -o subassign.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c subscript.c -o subscript.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c subset.c -o subset.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c summary.c -o summary.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sysutils.c -o sysutils.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c times.c -o times.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c unique.c -o unique.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -o util.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c version.c -o version.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c g_her_glyph.c -o g_her_glyph.o gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c xxxpr.f -o xxxpr.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: xxxpr.f: Warning: -D_FORTIFY_SOURCE not defined annobin: xxxpr.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/xdr/libxdr.a -lflexiblas -lgfortran -lm -lreadline -ltre -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/main' mkdir -p -- /builddir/build/BUILD/R-4.0.3/bin/exec mkdir -p -- /builddir/build/BUILD/R-4.0.3/lib make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R.bin Rmain.o -lR make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/main' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-4.0.3/modules make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/internet' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/internet' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Lapack.c -o Lapack.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o lapack.so Lapack.o -lR -lflexiblas -lgfortran -lm make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/lapack' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/lapack' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/X11' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/modules/X11' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' mkdir -p -- ../../library make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/profile' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/translations' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/translations' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/translations' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/base' building package 'base' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gramRd.c -o gramRd.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/compiler' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/compiler' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/compiler' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/utils' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src/cairo' make[9]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src/cairo' make[8]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src/cairo' make[7]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src/cairo' make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grDevices' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/graphics' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c influence.c -o influence.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c bsplvd.f -o bsplvd.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: bsplvd.f: Warning: -D_FORTIFY_SOURCE not defined annobin: bsplvd.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c bvalue.f -o bvalue.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: bvalue.f: Warning: -D_FORTIFY_SOURCE not defined annobin: bvalue.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c bvalus.f -o bvalus.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: bvalus.f: Warning: -D_FORTIFY_SOURCE not defined annobin: bvalus.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c loessf.f -o loessf.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: loessf.f: Warning: -D_FORTIFY_SOURCE not defined annobin: loessf.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c ppr.f -o ppr.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: ppr.f: Warning: -D_FORTIFY_SOURCE not defined annobin: ppr.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c qsbart.f -o qsbart.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: qsbart.f: Warning: -D_FORTIFY_SOURCE not defined annobin: qsbart.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c sgram.f -o sgram.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: sgram.f: Warning: -D_FORTIFY_SOURCE not defined annobin: sgram.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c sinerp.f -o sinerp.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: sinerp.f: Warning: -D_FORTIFY_SOURCE not defined annobin: sinerp.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c sslvrg.f -o sslvrg.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: sslvrg.f: Warning: -D_FORTIFY_SOURCE not defined annobin: sslvrg.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c stxwx.f -o stxwx.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: stxwx.f: Warning: -D_FORTIFY_SOURCE not defined annobin: stxwx.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c hclust.f -o hclust.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: hclust.f: Warning: -D_FORTIFY_SOURCE not defined annobin: hclust.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c kmns.f -o kmns.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: kmns.f: Warning: -D_FORTIFY_SOURCE not defined annobin: kmns.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c eureka.f -o eureka.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: eureka.f: Warning: -D_FORTIFY_SOURCE not defined annobin: eureka.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c stl.f -o stl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: stl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: stl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c portsrc.f -o portsrc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: portsrc.f: Warning: -D_FORTIFY_SOURCE not defined annobin: portsrc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined portsrc.f:2:34: 2 | LOGICAL FUNCTION STOPX(DUMMY) | 1 Warning: Unused dummy argument 'dummy' at (1) [-Wunused-dummy-argument] portsrc.f: In function 'i7do_': portsrc.f:6665:13: warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized] 6665 | IF (MAXINC + 1 .EQ. NCOMP) MAXCLQ = MAX0(MAXCLQ,NCOMP) | ^ portsrc.f:6575:44: warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized] 6575 | INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC, | ^ portsrc.f: In function 'dl7mst_': portsrc.f:5522: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] 5522 | IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | portsrc.f:5659: warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized] 5659 | IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 | portsrc.f: In function 'dg7qts_': portsrc.f:10330:55: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] 10330 | IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ portsrc.f:10413: warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized] 10413 | V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA) | portsrc.f:10325: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized] 10325 | LK = DMAX1(LK, PHI*W(PHIPIN)) | portsrc.f:10467:10: warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized] 10467 | IF (KA .GE. KAMIN) GO TO 340 | ^ portsrc.f: In function 'dd7dgb_': portsrc.f:12244: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] 12244 | V(NREDUC) = NRED | portsrc.f:12247: warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized] 12247 | V(DST0) = DNWTST | portsrc.f: In function 'dg7qsb_': portsrc.f:2516: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] 2516 | V(NREDUC) = NRED | portsrc.f:2515: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] 2515 | 60 V(DST0) = DS0 | portsrc.f: In function 'dl7msb_': portsrc.f:8175: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] 8175 | V(NREDUC) = NRED | portsrc.f:8174: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] 8174 | 90 V(DST0) = DS0 | portsrc.f: In function 'df7hes_': portsrc.f:8653: warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized] 8653 | 210 IV(FDH) = HES | portsrc.f: In function 'dparck_': portsrc.f:3588:10: warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized] 3588 | IF (LIV .LT. MIV2) GO TO 300 | ^ portsrc.f: In function 'drn2gb_': portsrc.f:12080: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] 12080 | 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | portsrc.f: In function 'drn2g_': portsrc.f:459: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] 459 | 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | portsrc.f:367: warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized] 367 | CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) | portsrc.f:367: warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c lminfl.f -o lminfl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: lminfl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: lminfl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lgfortran -lm -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/datasets' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/datasets' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/methods/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/methods/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/methods' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grid/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grid/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/grid' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/splines/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/splines/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/splines' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats4' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats4' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/stats4' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk/src' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/tcltk' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' make[5]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/parallel' make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/tests' you should 'make docs' now ... make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc' creating doc/NEWS creating doc/NEWS.pdf make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/html' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' installing parsed Rd make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' building/updating package metadata ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' writing package indices make[3]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' make[3]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' building all R object docs converting help for package 'base' Arithmetic html AsIs html Bessel html CallExternal html Colon html Comparison html Constants html Control html Cstack_info html DateTimeClasses html Dates html Defunct html Deprecated html Encoding html EnvVar html Extract html Extract.data.frame html Extract.factor html Extremes html Foreign-internal html Foreign html Hyperbolic html ISOdatetime html Internal html InternalMethods html La_library html La_version html Last.value html Log html Logic html LongVectors html MathFun html Memory-limits html Memory html NA html NULL html NumericConstants html Ops.Date html Paren html Platform html Primitive html Quotes html Random-user html Random html RdUtils html Recall html Reserved html Rhome html Round html S3method html Special html Startup html Syntax html Sys.getenv html Sys.getpid html Sys.glob html Sys.info html Sys.localeconv html Sys.readlink html Sys.setFileTime html Sys.setenv html Sys.sleep html Sys.time html Sys.which html Trig html UTF8filepaths html UseMethod html Vectorize html Version html abbreviate html agrep html all html all.equal html allnames html any html aperm html append html apply html args html array html as.Date html as.POSIXlt html as.data.frame html as.environment html as.function html asplit html assign html assignOps html attach html attr html attributes html autoload html backsolve html base-defunct html base-deprecated html base-internal html base-package html basename html bincode html bindenv html bitwise html body html bquote html browser html browserText html builtins html by html c html call html callCC html capabilities html cat html cbind html char.expand html character html charmatch html chartr html chkDots html chol html chol2inv html class html col html colSums html colnames html commandArgs html comment html complex html conditions html conflicts html connections html contributors html copyright html crossprod html cumsum html curlGetHeaders html cut.POSIXt html cut html data.class html data.frame html data.matrix html dataframeHelpers html date html dcf html debug html delayedAssign html deparse html deparseOpts html det html detach html dev html diag html diff html difftime html dim html dimnames html do.call html dontCheck html dots html double html dput html drop html droplevels html dump html duplicated html dynload html eapply html eigen html encodeString html environment html eval html exists html expand.grid html expression html extSoftVersion html factor html file.access html file.choose html file.info html file.path html file.show html files html files2 html find.package html findInterval html force html forceAndCall html formals html format html format.info html format.pval html formatDL html formatc html function html funprog html gc html gc.time html gctorture html get html getCallingDLL html getDLLRegisteredRoutines html getLoadedDLLs html getNativeSymbolInfo html gettext html getwd html gl html grep html grepRaw html groupGeneric html grouping html gzcon html hexmode html iconv html icuSetCollate html identical html identity html ifelse html integer html interaction html interactive html invisible html is.finite html is.function html is.language html is.object html is.recursive html is.single html is.unsorted html isR html isS4 html isSymmetric html jitter html kappa html kronecker html l10n_info html labels html lapply html lazyload html length html lengths html levels html libPaths html libcurlVersion html library html library.dynam html license html list html list.files html list2DF html list2env html load html locales html logical html lower.tri html ls html make.names html make.unique html mapply html marginSums html mat.or.vec html match html match.arg html match.call html match.fun html matmult html matrix html maxCol html mean html memCompress html memlimits html memory.profile html merge html message html missing html mode html name html names html nargs html nchar html nlevels html noquote html norm html normalizePath html notyet html nrow html ns-dblcolon html ns-hooks html ns-internal html ns-load html ns-reflect html ns-topenv html numeric html numeric_version html octmode html on.exit html options html order html outer html parse html paste html path.expand html pcre_config html plot html pmatch html polyroot html pos.to.env html pretty html print html print.dataframe html print.default html prmatrix html proc.time html prod html proportions html pushBack html qr html qraux html quit html range html rank html rapply html raw html rawConnection html rawConversion html readBin html readChar html readLines html readRDS html readRenviron html readline html reg.finalizer html regex html regmatches html rep html replace html rev html rle html rm html round.POSIXt html row html row.names html rowsum html sQuote html sample html save html scale html scan html search html seek html seq.Date html seq.POSIXt html seq html sequence html serialize html setTimeLimit html sets html shQuote html showConnections html sign html sink html slice.index html slotOp html socketSelect html solve html sort html source html split html sprintf html srcfile html standardGeneric html startsWith html stop html stopifnot html strptime html strrep html strsplit html strtoi html strtrim html structure html strwrap html subset html substitute html substr html sum html summary html svd html sweep html switch html sys.parent html sys.source html system html system.file html system.time html system2 html t html table html tabulate html tapply html taskCallback html taskCallbackManager html taskCallbackNames html tempfile html textconnections html tilde html timezones html toString html trace html traceback html tracemem html transform html trimws html try html typeof html unique html unlink html unlist html unname html userhooks html utf8Conversion html validUTF8 html vector html warning html warnings html weekday.POSIXt html which html which.min html with html withVisible html write html writeLines html xtfrm html zMachine html zScript html zapsmall html zpackages html zutils html Signals html converting help for package 'tools' CRANtools html HTMLheader html HTMLlinks html QC html Rcmd html Rd2HTML html Rd2txt_options html RdTextFilter html Rdiff html Rdindex html Rdutils html SweaveTeXFilter html add_datalist html assertCondition html bibstyle html buildVignette html buildVignettes html charsets html checkFF html checkMD5sums html checkPoFiles html checkRd html checkRdaFiles html checkTnF html checkVignettes html check_packages_in_dir html codoc html compactPDF html delimMatch html dependsOnPkgs html encoded html fileutils html find_gs_cmd html getVignetteInfo html loadRdMacros html makeLazyLoading html make_translations_pkg html makevars html md5sum html package_dependencies html package_native_routine_registration_skeleton html parseLatex html parse_Rd html print.via.format html pskill html psnice html read.00Index html showNonASCII html startDynamicHelp html testInstalledPackage html texi2dvi html toHTML html toRd html toTitleCase html tools-defunct html tools-deprecated html tools-package html undoc html updatePACKAGES html update_pkg_po html userdir html vignetteEngine html vignetteInfo html writePACKAGES html xgettext html converting help for package 'utils' BATCH html COMPILE html DLL.version html INSTALL html LINK html PkgUtils html Question html REMOVE html RHOME html RShowDoc html RSiteSearch html Rconsole html Rprof html Rprofmem html Rscript html Rtangle html RweaveLatex html SHLIB html Sweave html SweaveSyntConv html SweaveUtils html URLencode html View html adist html alarm html apropos html aregexec html arrangeWindows html askYesNo html aspell-utils html aspell html available.packages html bibentry html browseEnv html browseURL html browseVignettes html bug.report html capture.output html changedFiles html choose.dir html choose.files html chooseBioCmirror html chooseCRANmirror html citEntry html citation html cite html clipboard html close.socket html combn html compareVersion html contrib.url html count.fields html create.post html data html dataentry html debugcall html debugger html demo html download.file html download.packages html edit html edit.data.frame html example html file.edit html filetest html findLineNum html fix html flush.console html format html getAnywhere html getFromNamespace html getParseData html getS3method html getWindowsHandle html getWindowsHandles html glob2rx html globalVariables html hasName html head html help html help.request html help.search html help.start html hsearch-utils html install.packages html installed.packages html isS3method html isS3stdGen html localeToCharset html ls_str html maintainer html make.packages.html html make.socket html memory.size html menu html methods html mirrorAdmin html modifyList html news html nsl html object.size html package.skeleton html packageDescription html packageName html packageStatus html page html person html process.events html prompt html promptData html promptPackage html rcompgen html read.DIF html read.fortran html read.fwf html read.socket html read.table html readRegistry html recover html relist html remove.packages html removeSource html roman html rtags html savehistory html select.list html sessionInfo html setRepositories html setWindowTitle html shortPathName html sourceutils html stack html str html strcapture html summaryRprof html tar html toLatex html txtProgressBar html type.convert html untar html unzip html update.packages html url.show html utils-defunct html utils-deprecated html utils-package html vignette html warnErrList html winDialog html winMenus html winProgressBar html winextras html write.table html zip html converting help for package 'grDevices' Devices html Hershey html Japanese html Type1Font html adjustcolor html as.graphicsAnnot html as.raster html axisTicks html boxplot.stats html bringToTop html cairo html cairoSymbolFont html check.options html chull html cm html col2rgb html colorRamp html colors html contourLines html convertColor html densCols html dev html dev.capabilities html dev.capture html dev.flush html dev.interactive html dev.size html dev2 html dev2bitmap html devAskNewPage html embedFonts html extendrange html getGraphicsEvent html grDevices-package html grSoftVersion html gray html gray.colors html hcl html hsv html make.rgb html msgWindow html n2mfrow html nclass html palette html palettes html pdf html pdf.options html pictex html plotmath html postscript html postscriptFonts html pretty.Date html ps.options html quartz html quartzFonts html recordGraphics html recordplot html rgb html rgb2hsv html trans3d html windows html windows.options html windowsFonts html x11 html x11Fonts html xfig html xy.coords html xyTable html xyz.coords html png html savePlot html converting help for package 'graphics' abline html arrows html assocplot html axTicks html axis.POSIXct html axis html barplot html box html boxplot html boxplot.matrix html bxp html cdplot html clip html contour html convertXY html coplot html curve html dotchart html filled.contour html fourfoldplot html frame html graphics-defunct html graphics-package html grid html hist.POSIXt html hist html identify html image html layout html legend html lines html locator html matplot html mosaicplot html mtext html pairs html panel.smooth html par html persp html pie html plot.dataframe html plot.default html plot.design html plot.factor html plot.formula html plot.raster html plot.table html plot.window html plot.xy html plothistogram html points html polygon html polypath html rasterImage html rect html rug html screen html segments html smoothScatter html spineplot html stars html stem html stripchart html strwidth html sunflowerplot html symbols html text html title html units html xspline html zAxis html converting help for package 'stats' AIC html ARMAacf html ARMAtoMA html Beta html Binomial html Cauchy html Chisquare html Distributions html Exponential html Fdist html GammaDist html Geometric html HoltWinters html Hypergeometric html IQR html KalmanLike html Logistic html Lognormal html Multinom html NLSstAsymptotic html NLSstClosestX html NLSstLfAsymptote html NLSstRtAsymptote html NegBinomial html Normal html Pair html Poisson html SSD html SSasymp html SSasympOff html SSasympOrig html SSbiexp html SSfol html SSfpl html SSgompertz html SSlogis html SSmicmen html SSweibull html SignRank html StructTS html TDist html Tukey html TukeyHSD html Uniform html Weibull html Wilcoxon html acf html acf2AR html add1 html addmargins html aggregate html alias html anova html anova.glm html anova.lm html anova.mlm html ansari.test html aov html approxfun html ar html ar.ols html arima html arima.sim html arima0 html as.hclust html asOneSidedFormula html ave html bandwidth html bartlett.test html binom.test html biplot html biplot.princomp html birthday html box.test html cancor html case.names html checkMFClasses html chisq.test html cmdscale html coef html complete.cases html confint html constrOptim html contrast html contrasts html convolve html cophenetic html cor html cor.test html cov.wt html cpgram html cutree html decompose html delete.response html dendrapply html dendrogram html density html deriv html deviance html df.residual html diffinv html dist html dummy.coef html ecdf html eff.aovlist html effects html embed html expand.model.frame html extractAIC html factanal html factor.scope html family html fft html filter html fisher.test html fitted.values html fivenum html fligner.test html formula html formula.nls html friedman.test html ftable html ftable.formula html getInitial html glm html glm.control html glm.summaries html hclust html heatmap html identify.hclust html influence.measures html integrate html interaction.plot html is.empty html isoreg html kernapply html kernel html kmeans html kruskal.test html ks.test html ksmooth html lag html lag.plot html line html listof html lm html lm.influence html lm.summaries html lmfit html loadings html loess html loess.control html logLik html loglin html lowess html ls.diag html ls.print html lsfit html mad html mahalanobis html make.link html makepredictcall html manova html mantelhaen.test html mauchly.test html mcnemar.test html median html medpolish html model.extract html model.frame html model.matrix html model.tables html monthplot html mood.test html na.action html na.contiguous html na.fail html nafns html naprint html nextn html nlm html nlminb html nls html nls.control html nobs html numericDeriv html offset html oneway.test html optim html optimize html order.dendrogram html p.adjust html pairwise.prop.test html pairwise.t.test html pairwise.table html pairwise.wilcox.test html plot.HoltWinters html plot.acf html plot.density html plot.isoreg html plot.lm html plot.ppr html plot.profile.nls html plot.spec html plot.stepfun html plot.ts html poisson.test html poly html power html power.anova.test html power.prop.test html power.t.test html pp.test html ppoints html ppr html prcomp html predict.HoltWinters html predict html predict.arima html predict.glm html predict.lm html predict.loess html predict.nls html predict.smooth.spline html preplot html princomp html print.power.htest html print.ts html printCoefmat html profile html profile.nls html proj html prop.test html prop.trend.test html qqnorm html quade.test html quantile html r2dtable html rWishart html read.ftable html rect.hclust html relevel html reorder.dendrogram html reorder.factor html replications html reshape html residuals html runmed html scatter.smooth html screeplot html sd html se.contrast html selfStart html setNames html shapiro.test html sigma html simulate html smooth html smooth.spline html smoothEnds html sortedXyData html spec.ar html spec.pgram html spec.taper html spectrum html splinefun html start html stat.anova html stats-defunct html stats-deprecated html stats-package html step html stepfun html stl html stlmethods html summary.aov html summary.glm html summary.lm html summary.manova html summary.nls html summary.princomp html supsmu html symnum html t.test html termplot html terms html terms.formula html terms.object html time html toeplitz html ts-methods html ts html ts.plot html ts.union html tsSmooth html tsdiag html tsp html uniroot html update html update.formula html var.test html varimax html vcov html weighted.mean html weighted.residuals html weights html wilcox.test html window html xtabs html zC html converting help for package 'datasets' AirPassengers html BJsales html BOD html ChickWeight html DNase html EuStockMarkets html Formaldehyde html HairEyeColor html Harman23.cor html Harman74.cor html Indometh html InsectSprays html JohnsonJohnson html LakeHuron html LifeCycleSavings html Loblolly html Nile html Orange html OrchardSprays html PlantGrowth html Puromycin html Theoph html Titanic html ToothGrowth html UCBAdmissions html UKDriverDeaths html UKLungDeaths html UKgas html USAccDeaths html USArrests html USJudgeRatings html USPersonalExpenditure html VADeaths html WWWusage html WorldPhones html ability.cov html airmiles html airquality html anscombe html attenu html attitude html austres html beavers html cars html chickwts html co2 html crimtab html datasets-package html discoveries html esoph html euro html eurodist html faithful html freeny html infert html iris html islands html lh html longley html lynx html morley html mtcars html nhtemp html nottem html npk html occupationalStatus html precip html presidents html pressure html quakes html randu html rivers html rock html sleep html stackloss html state html sunspot.month html sunspot.year html sunspots html swiss html treering html trees html uspop html volcano html warpbreaks html women html zCO2 html converting help for package 'methods' BasicClasses html Classes html Classes_Details html Documentation html EmptyMethodsList-class html EnvironmentClass html GenericFunctions html Introduction html LanguageClasses html LinearMethodsList-class html MethodDefinition-class html MethodSupport html MethodWithNext-class html Methods html MethodsList-class html MethodsList html Methods_Details html Methods_for_Nongenerics html Methods_for_S3 html NextMethod html ObjectsWithPackage-class html RClassUtils html RMethodUtils html S3Part html S4groupGeneric html SClassExtension-class html StructureClasses html TraceClasses html as html callGeneric html canCoerce html cbind2 html className html classRepresentation-class html classesToAM html dotsMethods html evalSource html findClass html findMethods html fixPrevious html genericFunction-class html getClass html getMethod html getPackageName html hasArg html implicitGeneric html inheritedSlotNames html initialize-methods html is html isSealedMethod html languageEl html localRefClass html method.skeleton html methodUtilities html methods-defunct html methods-deprecated html methods-package html new html nonStructure-class html promptClass html promptMethods html refClass html removeMethod html representation html selectSuperClasses html setAs html setClass html setClassUnion html setGeneric html setGroupGeneric html setIs html setLoadActions html setMethod html setOldClass html setSClass html show html showMethods html signature-class html slot html stdRefClass html substituteDirect html testInheritedMethods html validObject html zBasicFunsList html converting help for package 'grid' Grid html absolute.size html arrow html calcStringMetric html current.viewport html dataViewport html depth html deviceLoc html drawDetails html editDetails html explode html gEdit html gPath html getNames html gpar html grid-defunct html grid-internal html grid-package html grid.DLapply html grid.add html grid.bezier html grid.cap html grid.circle html grid.clip html grid.convert html grid.copy html grid.curve html grid.delay html grid.display.list html grid.draw html grid.edit html grid.force html grid.frame html grid.function html grid.get html grid.grab html grid.grep html grid.grill html grid.grob html grid.layout html grid.lines html grid.locator html grid.ls html grid.move.to html grid.newpage html grid.null html grid.pack html grid.path html grid.place html grid.plot.and.legend html grid.points html grid.polygon html grid.pretty html grid.raster html grid.record html grid.rect html grid.refresh html grid.remove html grid.reorder html grid.roundrect html grid.segments html grid.set html grid.show.layout html grid.show.viewport html grid.text html grid.xaxis html grid.xspline html grid.yaxis html grobCoords html grobName html grobWidth html grobX html legendGrob html makeContent html plotViewport html resolveRasterSize html showGrob html showViewport html stringWidth html unit html unit.c html unit.length html unit.pmin html unit.rep html unitType html valid.just html validDetails html viewport html viewports html vpPath html widthDetails html xDetails html xsplinePoints html converting help for package 'splines' asVector html backSpline html bs html interpSpline html ns html periodicSpline html polySpline html predict.bSpline html predict.bs html splineDesign html splineKnots html splineOrder html splines-package html xyVector html converting help for package 'stats4' coef-methods html confint-methods html logLik-methods html mle-class html mle html plot-methods html profile-methods html profile.mle-class html show-methods html stats4-package html summary-methods html summary.mle-class html update-methods html vcov-methods html converting help for package 'tcltk' TclInterface html TkCommands html TkWidgetcmds html TkWidgets html tclServiceMode html tcltk-defunct html tcltk-package html tkProgressBar html tkStartGUI html tk_choose.dir html tk_choose.files html tk_messageBox html tk_select.list html tkpager html converting help for package 'compiler' compile html converting help for package 'parallel' RngStream html clusterApply html detectCores html makeCluster html parallel-package html splitIndices html children html mcaffinity html mcfork html mclapply html mcparallel html pvec html make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/Recommended' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library/Recommended' begin installing recommended package MASS * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpyiNorX/R.INSTALL1e6bf83025945d/MASS/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c MASS.c -o MASS.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lqs.c -o lqs.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpyiNorX/R.INSTALL1e6bf83025945d/MASS/src' installing to /builddir/build/BUILD/R-4.0.3/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MASS' finding HTML links ... done Aids2 html Animals html Boston html Cars93 html Cushings html DDT html GAGurine html Insurance html MASS-internal html Melanoma html Null html OME html Pima.tr html Rabbit html Rubber html SP500 html Sitka html Sitka89 html Skye html Traffic html UScereal html UScrime html VA html abbey html accdeaths html addterm html anorexia html anova.negbin html area html bacteria html bandwidth.nrd html bcv html beav1 html beav2 html biopsy html birthwt html boxcox html cabbages html caith html cats html cement html chem html con2tr html confint html contr.sdif html coop html corresp html cov.rob html cov.trob html cpus html crabs html deaths html denumerate html dose.p html drivers html dropterm html eagles html epil html eqscplot html farms html fgl html fitdistr html forbes html fractions html galaxies html gamma.dispersion html gamma.shape.glm html gehan html genotype html geyser html gilgais html ginv html glm.convert html glm.nb html glmmPQL html hills html hist.scott html housing html huber html hubers html immer html isoMDS html kde2d html lda html ldahist html leuk html lm.gls html lm.ridge html loglm html loglm1 html logtrans html lqs html mammals html mca html mcycle html menarche html michelson html minn38 html motors html muscle html mvrnorm html negative.binomial html newcomb html nlschools html npk html npr1 html oats html painters html pairs.lda html parcoord html petrol html phones html plot.lda html plot.mca html plot.profile html polr html predict.glmmPQL html predict.lda html predict.lqs html predict.mca html predict.qda html profile.glm html qda html quine html rational html renumerate html rlm html rms.curv html rnegbin html road html rotifer html sammon html ships html shoes html shrimp html shuttle html snails html stdres html steam html stepAIC html stormer html studres html summary.loglm html summary.negbin html summary.rlm html survey html synth.tr html theta.md html topo html truehist html ucv html waders html whiteside html width.SJ html write.matrix html wtloss html ** building package indices ** testing if installed package can be loaded * DONE (MASS) Making 'packages.html' ... done begin installing recommended package lattice * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpAMOdtN/R.INSTALL1e6c2b6719c939/lattice/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c threeDplot.c -o threeDplot.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpAMOdtN/R.INSTALL1e6c2b6719c939/lattice/src' installing to /builddir/build/BUILD/R-4.0.3/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lattice' finding HTML links ... done Lattice html Rows html USMortality html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** testing if installed package can be loaded * DONE (lattice) Making 'packages.html' ... done begin installing recommended package Matrix * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c CHMfactor.c -o CHMfactor.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Csparse.c -o Csparse.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c TMatrix_as.c -o TMatrix_as.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Tsparse.c -o Tsparse.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Mutils.c -o Mutils.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chm_common.c -o chm_common.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cs.c -o cs.o cs.c: In function 'cs_qr': cs.c:1408:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] 1408 | csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai, | ^ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cs_utils.c -o cs_utils.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dense.c -o dense.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgCMatrix.c -o dgCMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgTMatrix.c -o dgTMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgeMatrix.c -o dgeMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dpoMatrix.c -o dpoMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dppMatrix.c -o dppMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dsCMatrix.c -o dsCMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dsyMatrix.c -o dsyMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dspMatrix.c -o dspMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dtCMatrix.c -o dtCMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dtTMatrix.c -o dtTMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dtrMatrix.c -o dtrMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dtpMatrix.c -o dtpMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c factorizations.c -o factorizations.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ldense.c -o ldense.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgCMatrix.c -o lgCMatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sparseQR.c -o sparseQR.o In file included from /builddir/build/BUILD/R-4.0.3/include/R.h:91, from Mutils.h:12, from sparseQR.h:4, from sparseQR.c:1: sparseQR.c: In function 'sparseQR_coef': /builddir/build/BUILD/R-4.0.3/include/R_ext/RS.h:74:25: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 74 | #define Free(p) (R_chk_free( (void *)(p) ), (p) = NULL) | ^~~~~~~~~~ sparseQR.c:172:53: note: 'x' was declared here 172 | double *ax = REAL(GET_SLOT(ans, Matrix_xSym)), *x; | ^ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c abIndex.c -o abIndex.o make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[5]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD/Source' make[5]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD/Source' make[5]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/SuiteSparse_config' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD' ( cd Lib ; make -f "/builddir/build/BUILD/R-4.0.3/etc/Makeconf" -f Makefile ) make[5]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD/Lib' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_add.c -o cholmod_add.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_band.c -o cholmod_band.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o In file included from ../Core/cholmod_change_factor.c:116: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 40 | double *Lx, *Lz ; | ^~ In file included from ../Core/cholmod_change_factor.c:118: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 40 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] 265 | Int nsuper, xsize, ssize ; | ^~~~~ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] 680 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] 680 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 679 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] 679 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] 827 | Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; | ^ ../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] 826 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~~ ../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] 826 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_common.c -o cholmod_common.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_copy.c -o cholmod_copy.o ../Core/cholmod_copy.c: In function 'cholmod_copy': ../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] 278 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ ../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] 278 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_dense.c -o cholmod_dense.o In file included from ../Core/cholmod_dense.c:48: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ In file included from ../Core/cholmod_dense.c:50: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ In file included from ../Core/cholmod_dense.c:52: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/cholmod_dense.c: In function 'cholmod_eye': ../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 303 | Int i, n, nz ; | ^~ ../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 302 | double *Xx, *Xz ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_error.c -o cholmod_error.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_sparse.c -o cholmod_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse': ../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 488 | Int p, pend, j, ncol, packed, nzmax, nz, xtype ; | ^~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_transpose.c -o cholmod_transpose.o In file included from ../Core/cholmod_transpose.c:124: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:126: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:128: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:131: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:133: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ In file included from ../Core/cholmod_transpose.c:136: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_triplet.c -o cholmod_triplet.o In file included from ../Core/cholmod_triplet.c:108: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:110: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:112: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse': ../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 345 | Int i, j, p, k, stype, nrow, ncol, nz, ok ; | ^~ ../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] 344 | Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_version.c -o cholmod_version.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Check/cholmod_check.c -o cholmod_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] 207 | Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; | ^~~~~~~~~~ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 961 | Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; | ^~ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] 1508 | ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; | ^~~ ../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable] 1506 | count, precise, init_print, ilast, lnz, head, tail, jprev, plast, | ^~~~~~~ ../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] 1505 | Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, | ^~~~~~~~ ../Check/cholmod_check.c: In function 'check_factor.constprop.0': ../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized] 1507 | jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, | ^~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Check/cholmod_read.c -o cholmod_read.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Check/cholmod_write.c -o cholmod_write.o ../Check/cholmod_write.c: In function 'cholmod_write_sparse': ../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] 365 | Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, | ^~~~~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2': ../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] 422 | Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, | ^~~~ ../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] 419 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ ../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] 419 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p': ../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] 114 | Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; | ^ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:164: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:166: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:168: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ In file included from ../Cholesky/cholmod_rowfac.c:172: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:174: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:176: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o In file included from ../Cholesky/cholmod_solve.c:66: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 64 | double *Lx, *Yx, *Yz ; | ^~ In file included from ../Cholesky/cholmod_solve.c:69: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 64 | double *Lx, *Yx, *Yz ; | ^~ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] 337 | Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:46: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 55 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:48: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 55 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:50: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 55 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Modify/cholmod_updown.c -o cholmod_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_updown_mask': ../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] 410 | *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; | ^~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:78: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ In file included from ../Supernodal/cholmod_super_numeric.c:80: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:28: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 33 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 241 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ In file included from ../Supernodal/cholmod_super_solve.c:30: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 33 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 241 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] 455 | Int totsize ; | ^~~~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o In file included from ../Core/cholmod_change_factor.c:116: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 40 | double *Lx, *Lz ; | ^~ In file included from ../Core/cholmod_change_factor.c:118: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 40 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] 265 | Int nsuper, xsize, ssize ; | ^~~~~ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] 680 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] 680 | Int *Lp, *Li, *Lnz ; | ^~ ../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 679 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] 679 | double *Lx, *Lz ; | ^~ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] 827 | Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; | ^ ../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] 826 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~~ ../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] 826 | Int *Ls, *Lpi, *Lpx, *Super, *Li ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o ../Core/cholmod_copy.c: In function 'cholmod_l_copy': ../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] 278 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ ../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] 278 | Int nrow, ncol, up, lo, values, diag, astype ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o In file included from ../Core/cholmod_dense.c:48: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ In file included from ../Core/cholmod_dense.c:50: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ In file included from ../Core/cholmod_dense.c:52: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 30 | double *Ax, *Xx, *Az, *Xz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 136 | double *Xx, *Cx, *Xz, *Cz ; | ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 229 | double *Xx, *Xz, *Yx, *Yz ; | ^~ ../Core/cholmod_dense.c: In function 'cholmod_l_eye': ../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 303 | Int i, n, nz ; | ^~ ../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 302 | double *Xx, *Xz ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse': ../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 488 | Int p, pend, j, ncol, packed, nzmax, nz, xtype ; | ^~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o In file included from ../Core/cholmod_transpose.c:124: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:126: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:128: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:131: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 45 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 142 | double *Ax, *Az, *Fx, *Fz ; | ^~ In file included from ../Core/cholmod_transpose.c:133: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ In file included from ../Core/cholmod_transpose.c:136: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 47 | Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; | ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 46 | Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; | ^~ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] 143 | Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o In file included from ../Core/cholmod_triplet.c:108: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:110: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ In file included from ../Core/cholmod_triplet.c:112: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] 31 | double *Rx, *Rz, *Tx, *Tz ; | ^~ ../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse': ../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 345 | Int i, j, p, k, stype, nrow, ncol, nz, ok ; | ^~ ../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] 344 | Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] 207 | Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; | ^~~~~~~~~~ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] 961 | Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; | ^~ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] 1508 | ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; | ^~~ ../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable] 1506 | count, precise, init_print, ilast, lnz, head, tail, jprev, plast, | ^~~~~~~ ../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] 1505 | Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, | ^~~~~~~~ ../Check/cholmod_check.c: In function 'check_factor.constprop.0': ../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized] 1507 | jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, | ^~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o ../Check/cholmod_write.c: In function 'cholmod_l_write_sparse': ../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] 365 | Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, | ^~~~~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2': ../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] 422 | Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, | ^~~~ ../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] 419 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ ../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] 419 | Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, | ^~~~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p': ../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] 114 | Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; | ^ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:164: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:166: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:168: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ In file included from ../Cholesky/cholmod_rowfac.c:172: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:174: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 47 | double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; | ^~ In file included from ../Cholesky/cholmod_rowfac.c:176: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] 51 | use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; | ^~~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o In file included from ../Cholesky/cholmod_solve.c:66: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 64 | double *Lx, *Yx, *Yz ; | ^~ In file included from ../Cholesky/cholmod_solve.c:69: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 64 | double *Lx, *Yx, *Yz ; | ^~ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] 337 | Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:46: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 55 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:48: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 55 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 52 | double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; | ^~ In file included from ../MatrixOps/cholmod_sdmult.c:50: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 55 | Int packed, nrow, ncol, j, k, p, pend, kcol, i ; | ^~~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask': ../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] 410 | *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; | ^~~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:78: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ In file included from ../Supernodal/cholmod_super_numeric.c:80: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] 111 | double *Lx, *Ax, *Fx, *Az, *Fz, *C ; | ^~ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:28: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 33 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 241 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ In file included from ../Supernodal/cholmod_super_solve.c:30: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 33 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] 241 | nsrow2, n, ps2, j, i, d, nrhs ; | ^ gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] 455 | Int totsize ; | ^~~~~~~ ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD' ( cd Source ; make -f "/builddir/build/BUILD/R-4.0.3/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD/Source' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c colamd_global.c -o colamd_global.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c colamd.c -o colamd.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD' ( cd Source ; make -f "/builddir/build/BUILD/R-4.0.3/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD/Source' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_global.c -o amd_i_global.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/SuiteSparse_config' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -DNTIMER -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src/SuiteSparse_config' gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -lflexiblas -lgfortran -lm -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/src' installing to /builddir/build/BUILD/R-4.0.3/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices converting help for package 'Matrix' finding HTML links ... done BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html LU-class html Matrix-class html Matrix html MatrixClass html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur html SparseM-conv html Subassign-methods html TsparseMatrix-class html USCounties html Xtrct-methods html abIndex-class html Rd warning: /tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/man/abIndex-class.Rd:80: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic abIseq html all-methods html all.equal-methods html atomicVector-class html band html bandSparse html bdiag html boolean-matprod html cBind html chol html chol2inv-methods html colSums html compMatrix-class html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-def html dtpMatrix-class html dtrMatrix-class html expand html expm html externalFormats html facmul html forceSymmetric html formatSparseM html generalMatrix-class html graph2T html image-methods html Rd warning: /tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/man/image-methods.Rd:53: file link 'panel.levelplot.raster' in package 'lattice' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/man/image-methods.Rd:81: file link 'get.gpar' in package 'grid' does not exist and so has been treated as a topic indMatrix-class html index-class html invPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-classes html lsyMatrix-class html ltrMatrix-class html lu html matrix-products html Rd warning: /tmp/RtmpcmdnEE/R.INSTALL1e6c5e2b7e7320/Matrix/man/matrix-products.Rd:406: file link 'tcrossprod' in package 'base' does not exist and so has been treated as a topic nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero html norm html nsparseMatrix-classes html nsyMatrix-class html ntrMatrix-class html number-class html pMatrix-class html printSpMatrix html qr-methods html rankMatrix html rcond html rep2abI html replValue-class html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html symmetricMatrix-class html symmpart html triangularMatrix-class html uniqTsparse html unpack html unused-classes html updown html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) Making 'packages.html' ... done begin installing recommended package nlme * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpxDBMNt/R.INSTALL1e6ea1518712eb/nlme/src' gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c chol.f -o chol.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: chol.f: Warning: -D_FORTIFY_SOURCE not defined annobin: chol.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c corStruct.c -o corStruct.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gnls.c -o gnls.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c nlOptimizer.c -o nlOptimizer.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c nlme.c -o nlme.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c nlmefit.c -o nlmefit.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pdMat.c -o pdMat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pythag.c -o pythag.o gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c rs.f -o rs.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: rs.f: Warning: -D_FORTIFY_SOURCE not defined annobin: rs.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpxDBMNt/R.INSTALL1e6ea1518712eb/nlme/src' installing to /builddir/build/BUILD/R-4.0.3/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nlme' finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded * DONE (nlme) Making 'packages.html' ... done begin installing recommended package survival * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp2iBQIz/R.INSTALL1e6ef25fde5ce9/survival/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agexact.c -o agexact.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agfit4.c -o agfit4.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agfit5.c -o agfit5.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agmart.c -o agmart.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agmart3.c -o agmart3.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agscore2.c -o agscore2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agsurv3.c -o agsurv3.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agsurv4.c -o agsurv4.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c agsurv5.c -o agsurv5.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cdecomp.c -o cdecomp.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chinv2.c -o chinv2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chinv3.c -o chinv3.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cholesky2.c -o cholesky2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cholesky3.c -o cholesky3.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cholesky5.c -o cholesky5.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chsolve2.c -o chsolve2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chsolve3.c -o chsolve3.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chsolve5.c -o chsolve5.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c collapse.c -o collapse.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c concordance1.c -o concordance1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c concordance3.c -o concordance3.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cox_Rcallback.c -o cox_Rcallback.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxcount1.c -o coxcount1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxdetail.c -o coxdetail.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxexact.c -o coxexact.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxfit5.c -o coxfit5.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxfit6.c -o coxfit6.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxmart.c -o coxmart.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxmart2.c -o coxmart2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxph_wtest.c -o coxph_wtest.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxsafe.c -o coxsafe.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxscho.c -o coxscho.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxscore2.c -o coxscore2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxsurv1.c -o coxsurv1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxsurv2.c -o coxsurv2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dmatrix.c -o dmatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c doloop.c -o doloop.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c finegray.c -o finegray.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gchol.c -o gchol.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c multicheck.c -o multicheck.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c norisk.c -o norisk.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pyears1.c -o pyears1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pyears2.c -o pyears2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pyears3b.c -o pyears3b.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pystep.c -o pystep.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survConcordance.c -o survConcordance.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survdiff2.c -o survdiff2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survfit4.c -o survfit4.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survfitci.c -o survfitci.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survfitkm.c -o survfitkm.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survfitresid.c -o survfitresid.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survpenal.c -o survpenal.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survreg6.c -o survreg6.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survreg7.c -o survreg7.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survregc1.c -o survregc1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survregc2.c -o survregc2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c survsplit.c -o survsplit.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c tmerge.c -o tmerge.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c zph1.c -o zph1.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c zph2.c -o zph2.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o dmatrix.o doloop.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/Rtmp2iBQIz/R.INSTALL1e6ef25fde5ce9/survival/src' installing to /builddir/build/BUILD/R-4.0.3/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survival' finding HTML links ... done Surv html Surv2 html Surv2data html Survmethods html aareg html aeqSurv html agreg.fit html aml html anova.coxph html attrassign html basehaz html bladder html cch html cgd html cgd0 html cipoisson html clogit html cluster html colon html concordance html concordancefit html cox.zph html coxph html coxph.control html coxph.detail html coxph.object html coxph.wtest html coxsurv.fit html diabetic html dsurvreg html finegray html flchain html frailty html gbsg html heart html is.ratetable html kidney html levels.Surv html lines.survfit html logLik.coxph html logan html lung html mgus html mgus2 html model.frame.coxph html model.matrix.coxph html myeloid html nafld html neardate html nwtco html ovarian html pbc html pbcseq html plot.aareg html plot.cox.zph html plot.survfit html predict.coxph html predict.survreg html print.aareg html print.summary.coxph html print.summary.survexp html print.summary.survfit html print.survfit html pspline html pyears html quantile.survfit html ratetable html ratetableDate html rats html rats2 html reliability html residuals.coxph html residuals.survreg html retinopathy html rhDNase html ridge html rotterdam html royston html rttright html solder html stanford2 html statefig html strata html summary.aareg html summary.coxph html summary.pyears html summary.survexp html summary.survfit html survConcordance-deprecated html survSplit html survcheck html survdiff html survexp html survexp.fit html survexp.object html survexp.us html survfit html survfit.coxph html survfit.formula html survfit.matrix html survfit.object html survfit0 html survfitcoxph.fit html survival-internal html survobrien html survreg html survreg.control html survreg.distributions html survreg.object html survregDtest html tcut html tmerge html tobin html transplant html udca html untangle.specials html uspop2 html vcov.coxph html veteran html xtfrm.Surv html yates html yates_setup html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) Making 'packages.html' ... done begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'boot' finding HTML links ... done EEF.profile html Imp.Estimates html abc.ci html acme html aids html aircondit html amis html aml html beaver html bigcity html boot-practicals html boot html boot.array html boot.ci html brambles html breslow html calcium html cane html capability html catsM html cav html cd4 html cd4.nested html censboot html channing html claridge html cloth html co.transfer html coal html control html corr html cum3 html cv.glm html darwin html dogs html downs.bc html ducks html empinf html envelope html exp.tilt html fir html freq.array html frets html glm.diag html glm.diag.plots html gravity html hirose html imp.weights html inv.logit html islay html jack.after.boot html k3.linear html linear.approx html lines.saddle.distn html logit html manaus html melanoma html motor html neuro html nitrofen html nodal html norm.ci html nuclear html paulsen html plot.boot html poisons html polar html print.boot html print.bootci html print.saddle.distn html print.simplex html remission html saddle html saddle.distn html saddle.distn.object html salinity html simplex html simplex.object html smooth.f html sunspot html survival html tau html tilt.boot html tsboot html tuna html urine html var.linear html wool html ** building package indices ** testing if installed package can be loaded * DONE (boot) Making 'packages.html' ... done begin installing recommended package cluster * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c clara.c -o clara.o gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c daisy.f -o daisy.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: daisy.f: Warning: -D_FORTIFY_SOURCE not defined annobin: daisy.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dysta.f -o dysta.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dysta.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dysta.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fanny.c -o fanny.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mona.c -o mona.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pam.c -o pam.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sildist.c -o sildist.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c spannel.c -o spannel.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c twins.c -o twins.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/src' installing to /builddir/build/BUILD/R-4.0.3/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cluster' finding HTML links ... done agnes html agnes.object html agriculture html animals html bannerplot html chorSub html clara html clara.object html clusGap html clusplot.default html Rd warning: /tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/man/clusplot.default.Rd:212: file link 'cov.mve' in package 'MASS' does not exist and so has been treated as a topic clusplot.partition html cluster-internal html coef.hclust html daisy html diana html dissimilarity.object html ellipsoidhull html Rd warning: /tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/man/ellipsoidhull.Rd:36: file link 'cov.mve' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/man/ellipsoidhull.Rd:87: file link 'cov.mve' in package 'MASS' does not exist and so has been treated as a topic fanny html fanny.object html flower html lower.to.upper.tri.inds html mona html mona.object html pam html pam.object html partition.object html plantTraits html plot.agnes html Rd warning: /tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/man/plot.agnes.Rd:73: file link 'plot.dendrogram' in package 'stats' does not exist and so has been treated as a topic plot.diana html plot.mona html plot.partition html pltree html pluton html predict.ellipsoid html print.agnes html print.clara html print.diana html print.dissimilarity html Rd warning: /tmp/RtmpesbS5O/R.INSTALL1e6ffe80ce7a2/cluster/man/print.dissimilarity.Rd:27: file link 'print.dist' in package 'stats' does not exist and so has been treated as a topic print.fanny html print.mona html print.pam html ruspini html silhouette html sizeDiss html summary.agnes html summary.clara html summary.diana html summary.mona html summary.pam html twins.object html volume.ellipsoid html votes.repub html xclara html ** building package indices ** testing if installed package can be loaded * DONE (cluster) Making 'packages.html' ... done begin installing recommended package codetools * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'codetools' finding HTML links ... done checkUsage html codetools html findGlobals html showTree html ** building package indices ** testing if installed package can be loaded * DONE (codetools) Making 'packages.html' ... done begin installing recommended package foreign * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpwjzmg4/R.INSTALL1e706b600975a2/foreign/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c R_systat.c -o R_systat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rdbfread.c -o Rdbfread.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rdbfwrite.c -o Rdbfwrite.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c SASxport.c -o SASxport.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c avl.c -o avl.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbfopen.c -o dbfopen.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c file-handle.c -o file-handle.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c format.c -o format.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c minitab.c -o minitab.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pfm-read.c -o pfm-read.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sfm-read.c -o sfm-read.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c spss.c -o spss.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stataread.c -o stataread.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/Rtmpwjzmg4/R.INSTALL1e706b600975a2/foreign/src' installing to /builddir/build/BUILD/R-4.0.3/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreign' finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded * DONE (foreign) Making 'packages.html' ... done begin installing recommended package KernSmooth * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmplD1DzU/R.INSTALL1e70c532f5d212/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c blkest.f -o blkest.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: blkest.f: Warning: -D_FORTIFY_SOURCE not defined annobin: blkest.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c cp.f -o cp.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: cp.f: Warning: -D_FORTIFY_SOURCE not defined annobin: cp.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dgedi.f -o dgedi.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dgedi.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dgedi.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dgefa.f -o dgefa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dgefa.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dgefa.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c dgesl.f -o dgesl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: dgesl.f: Warning: -D_FORTIFY_SOURCE not defined annobin: dgesl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c linbin.f -o linbin.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: linbin.f: Warning: -D_FORTIFY_SOURCE not defined annobin: linbin.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c linbin2D.f -o linbin2D.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: linbin2D.f: Warning: -D_FORTIFY_SOURCE not defined annobin: linbin2D.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c locpoly.f -o locpoly.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: locpoly.f: Warning: -D_FORTIFY_SOURCE not defined annobin: locpoly.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c rlbin.f -o rlbin.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: rlbin.f: Warning: -D_FORTIFY_SOURCE not defined annobin: rlbin.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c sdiag.f -o sdiag.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: sdiag.f: Warning: -D_FORTIFY_SOURCE not defined annobin: sdiag.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gfortran -fno-optimize-sibling-calls -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection --no-optimize-sibling-calls -c sstdiag.f -o sstdiag.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran annobin: sstdiag.f: Warning: -D_FORTIFY_SOURCE not defined annobin: sstdiag.f: Warning: -D_GLIBCXX_ASSERTIONS not defined gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -lgfortran -lm -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmplD1DzU/R.INSTALL1e70c532f5d212/KernSmooth/src' installing to /builddir/build/BUILD/R-4.0.3/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'KernSmooth' finding HTML links ... done bkde html bkde2D html bkfe html dpih html dpik html dpill html locpoly html ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) Making 'packages.html' ... done begin installing recommended package rpart * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp2CJfc0/R.INSTALL1e71163fbd931/rpart/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c anova.c -o anova.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c anovapred.c -o anovapred.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c branch.c -o branch.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bsplit.c -o bsplit.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c choose_surg.c -o choose_surg.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fix_cp.c -o fix_cp.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c free_tree.c -o free_tree.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gini.c -o gini.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c graycode.c -o graycode.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c insert_split.c -o insert_split.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c make_cp_list.c -o make_cp_list.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c make_cp_table.c -o make_cp_table.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mysort.c -o mysort.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c nodesplit.c -o nodesplit.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c partition.c -o partition.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c poisson.c -o poisson.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pred_rpart.c -o pred_rpart.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c print_tree.c -o print_tree.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpart.c -o rpart.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpart_callback.c -o rpart_callback.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpartexp.c -o rpartexp.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpartexp2.c -o rpartexp2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpcountup.c -o rpcountup.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpmatrix.c -o rpmatrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rundown.c -o rundown.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rundown2.c -o rundown2.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c surrogate.c -o surrogate.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c usersplit.c -o usersplit.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xpred.c -o xpred.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xval.c -o xval.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/Rtmp2CJfc0/R.INSTALL1e71163fbd931/rpart/src' installing to /builddir/build/BUILD/R-4.0.3/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rpart' finding HTML links ... done car.test.frame html car90 html cu.summary html kyphosis html labels.rpart html meanvar.rpart html na.rpart html path.rpart html plot.rpart html plotcp html post.rpart html predict.rpart html print.rpart html printcp html prune.rpart html residuals.rpart html rpart-internal html rpart html rpart.control html rpart.exp html rpart.object html rsq.rpart html snip.rpart html solder.balance html stagec html summary.rpart html text.rpart html xpred.rpart html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) Making 'packages.html' ... done begin installing recommended package class * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpB84pgq/R.INSTALL1e71a05972192a/class/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c class.c -o class.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o class.so class.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpB84pgq/R.INSTALL1e71a05972192a/class/src' installing to /builddir/build/BUILD/R-4.0.3/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'class' finding HTML links ... done SOM html batchSOM html condense html knn html knn.cv html knn1 html lvq1 html lvq2 html lvq3 html lvqinit html lvqtest html multiedit html olvq1 html reduce.nn html somgrid html ** building package indices ** testing if installed package can be loaded * DONE (class) Making 'packages.html' ... done begin installing recommended package nnet * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpFNwYD2/R.INSTALL1e71d0365d4810/nnet/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c nnet.c -o nnet.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o nnet.so nnet.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpFNwYD2/R.INSTALL1e71d0365d4810/nnet/src' installing to /builddir/build/BUILD/R-4.0.3/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnet' finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded * DONE (nnet) Making 'packages.html' ... done begin installing recommended package spatial * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpME5d8P/R.INSTALL1e7202bcf9eef/spatial/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c krc.c -o krc.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pps.c -o pps.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/RtmpME5d8P/R.INSTALL1e7202bcf9eef/spatial/src' installing to /builddir/build/BUILD/R-4.0.3/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spatial' finding HTML links ... done Kaver html Kenvl html Kfn html Psim html SSI html Strauss html anova.trls html correlogram html expcov html ppgetregion html ppinit html pplik html ppregion html predict.trls html prmat html semat html surf.gls html surf.ls html trls.influence html trmat html variogram html ** building package indices ** testing if installed package can be loaded * DONE (spatial) Making 'packages.html' ... done begin installing recommended package mgcv * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpz1HJZT/R.INSTALL1e7238765a318/mgcv/src' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c coxph.c -o coxph.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c davies.c -o davies.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c discrete.c -o discrete.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gdi.c -o gdi.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c magic.c -o magic.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mat.c -o mat.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mgcv.c -o mgcv.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c misc.c -o misc.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mvn.c -o mvn.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qp.c -o qp.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c soap.c -o soap.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sparse-smooth.c -o sparse-smooth.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sparse.c -o sparse.o gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c tprs.c -o tprs.o gcc -shared -L/builddir/build/BUILD/R-4.0.3/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lgfortran -lm -fopenmp -L/builddir/build/BUILD/R-4.0.3/lib -lR make[3]: Leaving directory '/tmp/Rtmpz1HJZT/R.INSTALL1e7238765a318/mgcv/src' installing to /builddir/build/BUILD/R-4.0.3/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mgcv' finding HTML links ... done Beta html FFdes html Predict.matrix html Predict.matrix.cr.smooth html Predict.matrix.soap.film html Rrank html Sl.initial.repara html Sl.repara html Sl.setup html Tweedie html XWXd html anova.gam html bam html bam.update html bandchol html blas.thread.test html bug.reports.mgcv html cSplineDes html chol.down html choose.k html columb html concurvity html coxph html coxpht html dDeta html exclude.too.far html extract.lme.cov html family.mgcv html fix.family.link html fixDependence html formXtViX html formula.gam html fs.test html full.score html gam html gam.check html gam.control html gam.convergence html gam.fit html gam.fit3 html gam.fit5.post.proc html gam.mh html gam.models html gam.outer html gam.reparam html gam.scale html gam.selection html gam.side html gam.vcomp html gam2objective html gamObject html gamSim html gamlss.etamu html gamlss.gH html gamm html gammals html gaulss html get.var html gevlss html ginla html gumbls html identifiability html in.out html inSide html influence.gam html initial.sp html interpret.gam html jagam html k.check html ldTweedie html ldetS html linear.functional.terms html logLik.gam html ls.size html magic html magic.post.proc html mgcv-FAQ html mgcv-package html mgcv-parallel html mini.roots html missing.data html model.matrix.gam html mono.con html mroot html multinom html mvn html negbin html new.name html notExp html notExp2 html null.space.dimension html ocat html one.se.rule html pcls html pdIdnot html pdTens html pen.edf html place.knots html plot.gam html polys.plot html predict.bam html predict.gam html print.gam html psum.chisq html qq.gam html rTweedie html random.effects html residuals.gam html rig html rmvn html s html scat html sdiag html shash html single.index html slanczos html smooth.construct html smooth.construct.ad.smooth.spec html smooth.construct.bs.smooth.spec html smooth.construct.cr.smooth.spec html smooth.construct.ds.smooth.spec html smooth.construct.fs.smooth.spec html smooth.construct.gp.smooth.spec html smooth.construct.mrf.smooth.spec html smooth.construct.ps.smooth.spec html smooth.construct.re.smooth.spec html smooth.construct.so.smooth.spec html smooth.construct.sos.smooth.spec html smooth.construct.t2.smooth.spec html smooth.construct.tensor.smooth.spec html smooth.construct.tp.smooth.spec html smooth.info html smooth.terms html smooth2random html smoothCon html sp.vcov html spasm.construct html step.gam html summary.gam html t2 html te html tensor.prod.model.matrix html totalPenaltySpace html trichol html trind.generator html twlss html uniquecombs html vcov.gam html vis.gam html ziP html ziplss html ** building package indices ** testing if installed package can be loaded * DONE (mgcv) Making 'packages.html' ... done make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/Recommended' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library/Recommended' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3' configuring Java ... Java interpreter : /usr/bin/java Java version : 11.0.9-ea Java home path : /usr/lib/jvm/java-11-openjdk-11.0.9.6-0.0.ea.fc33.aarch64 Java compiler : not present Java headers gen.: Java archive tool: trying to compile and link a JNI program detected JNI cpp flags : detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm make[2]: Entering directory '/tmp/Rjavareconf.JKKjyj' gcc -I"/builddir/build/BUILD/R-4.0.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c conftest.c -o conftest.o conftest.c:1:10: fatal error: jni.h: No such file or directory 1 | #include | ^~~~~~~ compilation terminated. make[2]: Leaving directory '/tmp/Rjavareconf.JKKjyj' make[2]: *** [/builddir/build/BUILD/R-4.0.3/etc/Makeconf:172: conftest.o] Error 1 Unable to compile a JNI program JAVA_HOME : /usr/lib/jvm/java-11-openjdk-11.0.9.6-0.0.ea.fc33.aarch64 Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /builddir/build/BUILD/R-4.0.3 Done. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3' + cd src/nmath/standalone + make (cd ../../include; make Rmath.h) make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/include' Copying source files make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/nmath/standalone' + make pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... 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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]["long.double"] \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 316--319 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 552--558 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 2671) in paragraph at lines 1200--1203 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1994--1994 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2435--2440 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2435--2440 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3821--3823 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4062--4062 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5098--5100 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6273--6273 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [93] [94] [95] [96] [97] [98] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6737--6739 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 6902--6905 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [101] [102] [103] Underfull \hbox (badness 6063) in paragraph at lines 7084--7090 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7084--7090 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7084--7090 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7084--7090 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or Underfull \hbox (badness 1303) in paragraph at lines 7146--7153 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the [104] Underfull \hbox (badness 2111) in paragraph at lines 7157--7162 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] Underfull \hbox (badness 1077) in paragraph at lines 7473--7479 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7473--7479 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [109] [110] [111] [112] [113] Underfull \hbox (badness 2096) in paragraph at lines 7815--7819 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [114] [115] Underfull \hbox (badness 2351) in paragraph at lines 7933--7936 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [116] [117] [118] [119] [120] Underfull \hbox (badness 4479) in paragraph at lines 8262--8273 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [121] [122] [123] [124] [125] [126] Underfull \hbox (badness 1629) in paragraph at lines 8711--8723 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8711--8723 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8711--8723 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1178) in paragraph at lines 9467--9471 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] Underfull \hbox (badness 1735) in paragraph at lines 10636--10640 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [154] [155] [156] [157] [158] [159] [160] Underfull \hbox (badness 6396) in paragraph at lines 11086--11094 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11086--11094 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 4569) in paragraph at lines 12204--12208 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12204--12208 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 2253) in paragraph at lines 13879--13881 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [199] Underfull \hbox (badness 1565) in paragraph at lines 13952--13956 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [200] Underfull \hbox (badness 4927) in paragraph at lines 13996--13998 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [201] Underfull \hbox (badness 3148) in paragraph at lines 14094--14099 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [202] Underfull \hbox (badness 1466) in paragraph at lines 14141--14144 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [203] Underfull \hbox (badness 10000) in paragraph at lines 14268--14272 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14279--14282 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [204] [205] [206] [207] [208] Underfull \hbox (badness 3965) in paragraph at lines 14573--14577 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Underfull \hbox (badness 4429) in paragraph at lines 15351--15354 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [220] Underfull \hbox (badness 10000) in paragraph at lines 15457--15459 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15457--15459 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see [221] Underfull \hbox (badness 10000) in paragraph at lines 15479--15484 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15479--15484 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15491--15495 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15491--15495 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want Underfull \hbox (badness 2035) in paragraph at lines 15530--15534 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [222] [223] [224] [225] [226] [227] [228] [229] [230] Underfull \hbox (badness 2452) in paragraph at lines 16130--16134 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16130--16134 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [231] [232] [233] Underfull \hbox (badness 1092) in paragraph at lines 16303--16308 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [234] [235] [236] Underfull \hbox (badness 6741) in paragraph at lines 16553--16557 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [237] [238] [239] [240] [241] [242] [243] [244] [245] Underfull \vbox (badness 10000) has occurred while \output is active [246] [247] [248] [249] [250] [251] [252] [253] [254] Underfull \hbox (badness 1478) in paragraph at lines 17863--17866 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [255] [256] [257] [258] Underfull \hbox (badness 10000) in paragraph at lines 18123--18125 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [259] [260] [261] [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1442) in paragraph at lines 18723--18725 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [268] [269] [270] [271] [272] [273] [274] Underfull \hbox (badness 1248) in paragraph at lines 19289--19292 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [275] [276] [277] [278] [279] Underfull \hbox (badness 4739) in paragraph at lines 19552--19554 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [280] [281] [282] [283] [284] [285] Underfull \hbox (badness 1596) in paragraph at lines 19971--19976 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [286] [287] [288] [289] [290] [291] [292] [293] [294] Underfull \hbox (badness 2469) in paragraph at lines 20576--20581 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [295] Underfull \hbox (badness 10000) in paragraph at lines 20590--20597 [][][]$\T1/zi4/m/n/10 https : / / curl . haxx . se / docs / sslcerts . html$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20664--20668 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20664--20668 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [296] [297] [298] Underfull \hbox (badness 1014) in paragraph at lines 20834--20839 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] Underfull \hbox (badness 1264) in paragraph at lines 21681--21686 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: Underfull \hbox (badness 4441) in paragraph at lines 21710--21713 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] Underfull \hbox (badness 6047) in paragraph at lines 22457--22459 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] Underfull \hbox (badness 2790) in paragraph at lines 24028--24031 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24028--24031 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [346] [347] [348] [349] Underfull \hbox (badness 1194) in paragraph at lines 24314--24317 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [350] [351] Underfull \hbox (badness 2368) in paragraph at lines 24521--24527 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24521--24527 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 10000) in paragraph at lines 24903--24906 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [358] [359] [360] [361] [362] [363] [364] [365] [366] Underfull \hbox (badness 10000) in paragraph at lines 25520--25522 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 1038) in paragraph at lines 26365--26373 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26365--26373 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26365--26373 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26374--26377 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26398--26400 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [379] [380] Underfull \hbox (badness 2142) in paragraph at lines 26539--26543 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26596--26601 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [381] [382] [383] Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26901--26904 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [384] Underfull \hbox (badness 2689) in paragraph at lines 26927--26929 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 26962--26967 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 26968--26979 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 26968--26979 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 26980--26983 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [385] [386] [387] [388] [389] [390] [391] [392] Underfull \hbox (badness 10000) in paragraph at lines 27527--27530 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [393] Underfull \hbox (badness 7925) in paragraph at lines 27607--27611 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27607--27611 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27612--27621 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 2726) in paragraph at lines 28473--28476 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] Underfull \vbox (badness 10000) has occurred while \output is active [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 1533) in paragraph at lines 30206--30209 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [431] [432] [433] Underfull \hbox (badness 1163) in paragraph at lines 30369--30380 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] Underfull \hbox (badness 10000) in paragraph at lines 31953--31957 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 31953--31957 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [456] Underfull \hbox (badness 3557) in paragraph at lines 31975--31977 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1701) in paragraph at lines 31978--31982 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tp : / / www . pcre . org / [457] [458] [459] [460] [461] [462] [463] [464] Underfull \hbox (badness 1655) in paragraph at lines 32533--32535 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] Underfull \hbox (badness 2261) in paragraph at lines 33721--33726 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [482] Underfull \hbox (badness 10000) in paragraph at lines 33748--33754 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33748--33754 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] Underfull \vbox (badness 10000) has occurred while \output is active [520] [521] [522] [523] [524] [525] [526] [527] Underfull \hbox (badness 1072) in paragraph at lines 36936--36940 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 36941--36945 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 36971--36977 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 36971--36977 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 36971--36977 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 36983--36990 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [528] [529] [530] [531] Underfull \hbox (badness 2644) in paragraph at lines 37215--37219 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [532] [533] Underfull \hbox (badness 1142) in paragraph at lines 37367--37373 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 1565) in paragraph at lines 38644--38646 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [552] [553] [554] [555] [556] [557] [558] [559] [560] Underfull \hbox (badness 1137) in paragraph at lines 39234--39240 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39253--39258 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [561] [562] Underfull \hbox (badness 1616) in paragraph at lines 39366--39371 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [563] [564] [565] [566] [567] [568] [569] [570] Underfull \hbox (badness 1472) in paragraph at lines 39893--39896 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] Underfull \hbox (badness 10000) in paragraph at lines 40812--40816 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [584] [585] [586] [587] Underfull \hbox (badness 10000) in paragraph at lines 41063--41066 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [588] [589] [590] Underfull \hbox (badness 10000) in paragraph at lines 41247--41251 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [591] [592] [593] [594] [595] [596] [597] [598] Underfull \hbox (badness 10000) in paragraph at lines 41868--41871 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] Underfull \hbox (badness 1990) in paragraph at lines 42790--42798 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 42790--42798 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [612] [613] [614] [615] [616] [617] [618] [619] Underfull \hbox (badness 1917) in paragraph at lines 43295--43302 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [620] [621] [622] [623] [624] [625] Underfull \hbox (badness 2452) in paragraph at lines 43747--43753 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [626] [627] [628] [629] [630] [631] Underfull \hbox (badness 3668) in paragraph at lines 44120--44122 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [632] Underfull \hbox (badness 2401) in paragraph at lines 44250--44254 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [633] [634] [635] Underfull \hbox (badness 2111) in paragraph at lines 44439--44444 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 44460--44465 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [636] [637] [638] [639] [640] [641] [642] [643] [644] Underfull \hbox (badness 5417) in paragraph at lines 45048--45052 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [645] Underfull \hbox (badness 10000) in paragraph at lines 45109--45113 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [646]) (./compiler-pkg.tex Chapter 2. [647] [648] [649] [650]) (./datasets-pkg.tex Chapter 3. [651] [652] [653] [654] [655] [656] Underfull \vbox (badness 1472) has occurred while \output is active [657] [658] [659] [660] [661] [662] [663] [664] [665] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] Overfull \vbox (4.26088pt too high) has occurred while \output is active [688] [689] [690] [691] [692] [693] Overfull \vbox (13.87083pt too high) has occurred while \output is active [694] Underfull \vbox (badness 2376) has occurred while \output is active [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] Overfull \vbox (10.49593pt too high) has occurred while \output is active [711] Overfull \vbox (15.49593pt too high) has occurred while \output is active [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]) (./grDevices-pkg.tex Chapter 4. [727] [728] [729] [730] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [731] [732] [733] [734] [735] [736] [737] [738] [739] Underfull \hbox (badness 1424) in paragraph at lines 892--894 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [740] [741] [742] [743] [744] Underfull \hbox (badness 5175) in paragraph at lines 1186--1188 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [745] [746] Underfull \hbox (badness 2512) in paragraph at lines 1305--1307 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [747] Underfull \hbox (badness 1852) in paragraph at lines 1399--1402 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [748] [749] [750] Underfull \hbox (badness 1490) in paragraph at lines 1605--1610 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [751] [752] [753] [754] [755] [756] Underfull \hbox (badness 1325) in paragraph at lines 2011--2021 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [757] Underfull \hbox (badness 10000) in paragraph at lines 2123--2125 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [758] [759] [760] Underfull \hbox (badness 6758) in paragraph at lines 2302--2305 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [761] [762] [763] [764] [765] [766] [767] [768] [769] Underfull \hbox (badness 10000) in paragraph at lines 2910--2911 Underfull \vbox (badness 10000) has occurred while \output is active [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 10000) in paragraph at lines 3484--3489 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [778] [779] [780] [781] [782] [783] [784] Underfull \vbox (badness 10000) has occurred while \output is active [785] Underfull \hbox (badness 10000) in paragraph at lines 3983--3986 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 10000) in paragraph at lines 4719--4724 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 4181) in paragraph at lines 4719--4724 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in [796] Underfull \vbox (badness 10000) has occurred while \output is active [797] [798] Underfull \hbox (badness 1584) in paragraph at lines 4875--4877 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4879--4886 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [799] [800] [801] [802] Underfull \hbox (badness 1377) in paragraph at lines 5185--5190 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [803] Underfull \hbox (badness 1418) in paragraph at lines 5261--5268 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5279--5281 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [804] Underfull \hbox (badness 1377) in paragraph at lines 5390--5395 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [805] Underfull \hbox (badness 7344) in paragraph at lines 5459--5461 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [806] [807] Underfull \hbox (badness 2035) in paragraph at lines 5596--5605 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5596--5605 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5596--5605 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [808] Underfull \hbox (badness 10000) in paragraph at lines 5664--5671 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5664--5671 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . Underfull \vbox (badness 10000) has occurred while \output is active [809] [810] [811] Underfull \hbox (badness 1546) in paragraph at lines 5806--5814 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [812] [813] [814] [815] [816] [817] [818] [819] Underfull \hbox (badness 10000) in paragraph at lines 6344--6347 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [820] [821] [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] Underfull \hbox (badness 1189) in paragraph at lines 7169--7171 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [832] Underfull \hbox (badness 10000) in paragraph at lines 7273--7275 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [833] [834] [835] [836] Underfull \hbox (badness 3780) in paragraph at lines 7580--7586 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [837] [838] [839] Underfull \hbox (badness 2680) in paragraph at lines 7782--7784 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [840] [841] [842]) (./graphics-pkg.tex Chapter 5. [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] Underfull \vbox (badness 10000) has occurred while \output is active [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] Underfull \hbox (badness 1728) in paragraph at lines 2328--2330 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [879] Underfull \hbox (badness 1009) in paragraph at lines 2421--2428 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] Underfull \hbox (badness 3229) in paragraph at lines 4596--4601 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [913] [914] [915] [916] Underfull \hbox (badness 10000) in paragraph at lines 5026--5032 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5026--5032 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [917] [918] Underfull \hbox (badness 10000) in paragraph at lines 5157--5160 [919 ] Underfull \hbox (badness 10000) in paragraph at lines 5218--5220 [920 ] [921] Underfull \hbox (badness 10000) in paragraph at lines 5408--5410 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [922] [923] [924] [925] [926] [927] [928] [929]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5890 \aliasA{plot}{plot.default}{plot} [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6795--6796 [][] [943 ] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] Underfull \hbox (badness 2012) in paragraph at lines 7620--7623 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 10000) in paragraph at lines 8886--8888 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8888--8890 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [975]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8968 \HeaderA{units}{Graphical Units}{units} [976] [977] [978] [979]) (./grid-pkg.tex [980] Chapter 6. [981] [982] [983] [984] [985] [986] [987] [988] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [989] [990] [991] [992] [993] [994] [995] [996] [997] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] Underfull \vbox (badness 10000) has occurred while \output is active [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] Underfull \hbox (badness 1067) in paragraph at lines 4487--4490 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1051] [1052] [1053] [1054] Underfull \hbox (badness 7256) in paragraph at lines 4732--4734 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] Underfull \hbox (badness 1824) in paragraph at lines 6604--6607 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1084] [1085] [1086] [1087]) (./methods-pkg.tex [1088] Chapter 7. [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] Underfull \vbox (badness 10000) has occurred while \output is active [1097] Underfull \vbox (badness 10000) has occurred while \output is active [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1115] [1116] [1117] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1118] [1119] [1120] [1121] [1122] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1123] [1124] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1132] [1133] [1134] [1135] [1136] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1137] [1138] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \vbox (badness 10000) has occurred while \output is active [1157] Underfull \vbox (badness 10000) has occurred while \output is active [1158] [1159] [1160] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1161] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1162] [1163] [1164] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1173] [1174] [1175] [1176] Underfull \vbox (badness 10000) has occurred while \output is active [1177] [1178] [1179]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1180] [1181] [1182]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1183] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1184] [1185] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1219] [1220] [1221] [1222] [1223] [1224] [1225] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1226] [1227] [1228]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \hbox (badness 3386) in paragraph at lines 1393--1396 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1249] [1250] [1251]) (./splines-pkg.tex [1252] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266]) (./stats-pkg.tex Chapter 10. [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1280] [1281] [1282] [1283] [1284] [1285] [1286] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1287] [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] Underfull \hbox (badness 2503) in paragraph at lines 3486--3489 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] Underfull \hbox (badness 1127) in paragraph at lines 4402--4405 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1332] [1333] [1334] [1335] [1336] Underfull \hbox (badness 3989) in paragraph at lines 4741--4748 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2556) in paragraph at lines 5377--5380 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5394--5396 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1346] [1347] [1348] [1349] [1350] [1351] Underfull \hbox (badness 2503) in paragraph at lines 5791--5795 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] Underfull \hbox (badness 7081) in paragraph at lines 6585--6588 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6589--6591 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 10000) in paragraph at lines 7435--7438 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] Underfull \vbox (badness 10000) has occurred while \output is active [1398] [1399] [1400] [1401] Underfull \hbox (badness 2626) in paragraph at lines 9114--9117 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1402] [1403] Underfull \hbox (badness 2503) in paragraph at lines 9221--9225 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 4518) in paragraph at lines 10557--10562 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1423] [1424] [1425] [1426] [1427] Underfull \hbox (badness 2142) in paragraph at lines 10918--10921 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10937--10940 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1428] Underfull \hbox (badness 1708) in paragraph at lines 10999--11003 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 1694) in paragraph at lines 11395--11398 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11879 \aliasA{hat}{influence.measures}{hat} [1442] [1443] Underfull \hbox (badness 1484) in paragraph at lines 12021--12023 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] Underfull \hbox (badness 10000) in paragraph at lines 12619--12621 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 2894) in paragraph at lines 12955--12959 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] Underfull \hbox (badness 4518) in paragraph at lines 13706--13711 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] Underfull \hbox (badness 4518) in paragraph at lines 14359--14364 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1479] [1480] Underfull \hbox (badness 8151) in paragraph at lines 14497--14501 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14504--14506 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] Underfull \hbox (badness 2503) in paragraph at lines 15577--15581 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4621) in paragraph at lines 16090--16096 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \vbox (badness 10000) has occurred while \output is active [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] Underfull \hbox (badness 1377) in paragraph at lines 18701--18706 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18706--18709 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18719--18723 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18719--18723 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1545] Underfull \hbox (badness 2662) in paragraph at lines 18727--18731 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1546] [1547] Underfull \vbox (badness 10000) has occurred while \output is active [1548] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18952--18952 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18955--18955 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1549] [1550] [1551] [1552] [1553] [1554] [1555] Underfull \hbox (badness 1337) in paragraph at lines 19413--19416 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 3049) in paragraph at lines 19911--19915 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1564] [1565] [1566] [1567] Underfull \hbox (badness 1194) in paragraph at lines 20174--20177 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1568] [1569] [1570] [1571] [1572] [1573] [1574] Underfull \hbox (badness 2503) in paragraph at lines 20553--20556 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20580--20582 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 10000) in paragraph at lines 21658--21664 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1337) in paragraph at lines 23015--23021 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] Underfull \hbox (badness 10000) in paragraph at lines 23578--23579 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 10000) in paragraph at lines 23851--23854 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23851--23854 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1625] [1626] [1627] [1628] [1629] [1630] [1631] [1632] Underfull \hbox (badness 1824) in paragraph at lines 24437--24443 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24437--24443 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1633] Underfull \hbox (badness 10000) in paragraph at lines 24458--24461 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24527--24531 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1634] [1635] [1636] [1637] [1638] [1639] [1640] Underfull \vbox (badness 10000) has occurred while \output is active [1641] [1642] Underfull \hbox (badness 2165) in paragraph at lines 25036--25041 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1643] [1644] [1645] Underfull \hbox (badness 1867) in paragraph at lines 25241--25243 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25256--25260 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \vbox (badness 10000) has occurred while \output is active [1668] Underfull \hbox (badness 3514) in paragraph at lines 26818--26823 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1669] [1670] [1671] [1672] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27052--27052 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1673] Underfull \hbox (badness 3514) in paragraph at lines 27088--27094 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1674] [1675] [1676] Underfull \hbox (badness 3514) in paragraph at lines 27302--27307 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1677] [1678] Underfull \hbox (badness 3514) in paragraph at lines 27389--27394 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1679] Underfull \hbox (badness 3514) in paragraph at lines 27454--27459 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1680] Underfull \hbox (badness 3514) in paragraph at lines 27548--27553 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] [1682] Underfull \hbox (badness 6691) in paragraph at lines 27640--27645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] Underfull \hbox (badness 4024) in paragraph at lines 28170--28173 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] Underfull \hbox (badness 5431) in paragraph at lines 28776--28778 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1700] [1701] [1702] [1703] Underfull \hbox (badness 5431) in paragraph at lines 28986--28989 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1704] [1705] [1706] [1707] [1708] Underfull \hbox (badness 1337) in paragraph at lines 29301--29305 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1709] [1710] [1711] [1712] Underfull \hbox (badness 1616) in paragraph at lines 29613--29616 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1713] [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] Underfull \hbox (badness 3557) in paragraph at lines 30747--30751 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1731] [1732] Underfull \vbox (badness 10000) has occurred while \output is active [1733] [1734] [1735] Underfull \hbox (badness 1337) in paragraph at lines 31111--31115 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 31640--31644 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31654--31656 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1744] [1745] [1746] Overfull \hbox (0.71648pt too wide) in paragraph at lines 31847--31847 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1747] [1748] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32008--32008 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1749] [1750] [1751] [1752] [1753]) (./stats4-pkg.tex [1754] Chapter 11. [1755] [1756] [1757] Underfull \vbox (badness 10000) has occurred while \output is active [1758] [1759] [1760] [1761] [1762]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1763] [1764] [1765]) (./tcltk-pkg.tex [1766] Chapter 12. [1767] [1768] [1769] [1770] [1771] [1772] [1773] Underfull \vbox (badness 10000) has occurred while \output is active [1774] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786]) (./tools-pkg.tex Chapter 13. [1787] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1788] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1789] [1790] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1791] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1792] [1793] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1794] [1795] [1796] [1797] [1798] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1799] [1800] [1801] [1802] [1803] Underfull \hbox (badness 4441) in paragraph at lines 1150--1160 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1804] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1805] [1806] [1807] [1808] [1809] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1810] [1811] Underfull \hbox (badness 7981) in paragraph at lines 1707--1712 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1812] Underfull \hbox (badness 1082) in paragraph at lines 1714--1716 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1813] [1814] [1815]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1911 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1816] [1817] [1818] [1819] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2213--2213 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1820] [1821] [1822] Underfull \hbox (badness 7981) in paragraph at lines 2382--2388 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1823] [1824] [1825] [1826] [1827] [1828] [1829] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2864. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2865. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2865. [1830] [1831] [1832] [1833] Underfull \hbox (badness 1424) in paragraph at lines 3148--3150 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] Underfull \hbox (badness 10000) in paragraph at lines 3849--3851 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 3988--3991 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1847] Underfull \hbox (badness 1137) in paragraph at lines 4090--4092 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1848] [1849] [1850] [1851] [1852] Underfull \hbox (badness 1796) in paragraph at lines 4398--4403 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1853] Underfull \hbox (badness 1838) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4472--4478 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1854] [1855] [1856] [1857] Underfull \hbox (badness 2197) in paragraph at lines 4747--4757 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1858] Underfull \hbox (badness 1571) in paragraph at lines 4810--4814 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1859] [1860] [1861]) (./utils-pkg.tex [1862] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1868] [1869] [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 719--725 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 719--725 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1873] [1874] Underfull \hbox (badness 5847) in paragraph at lines 855--861 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 855--861 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1875] Underfull \hbox (badness 3861) in paragraph at lines 923--928 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1876] [1877] [1878] Underfull \hbox (badness 3323) in paragraph at lines 1094--1102 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1879] [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 1371) in paragraph at lines 1611--1613 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1886] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1681. [1887] [1888] [1889] [1890] [1891] [1892] [1893] [1894] Underfull \hbox (badness 2057) in paragraph at lines 2224--2226 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1895] [1896] [1897] [1898] [1899]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2575 ... the Clipboard in MS Windows}{clipboard} [1900] [1901] Underfull \hbox (badness 1748) in paragraph at lines 2742--2745 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5388) in paragraph at lines 3151--3155 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3156--3159 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 1430) in paragraph at lines 3927--3935 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1919] Underfull \hbox (badness 1231) in paragraph at lines 4004--4016 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1920] [1921] Underfull \hbox (badness 10000) in paragraph at lines 4162--4164 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4860 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4860 ...mat Unordered and Ordered Lists}{format} [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] Underfull \hbox (badness 1622) in paragraph at lines 5379--5383 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6097. Underfull \hbox (badness 1371) in paragraph at lines 6101--6103 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1951] [1952] Underfull \hbox (badness 1502) in paragraph at lines 6190--6195 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6190--6195 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1953] [1954] Underfull \hbox (badness 10000) in paragraph at lines 6363--6372 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1955] Underfull \hbox (badness 2150) in paragraph at lines 6427--6430 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1956] [1957] Underfull \hbox (badness 3118) in paragraph at lines 6565--6567 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1958] [1959] Underfull \hbox (badness 1325) in paragraph at lines 6743--6747 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6755--6761 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1960] Underfull \hbox (badness 10000) in paragraph at lines 6827--6830 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6827--6830 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6835--6838 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1961] Underfull \hbox (badness 3219) in paragraph at lines 6906--6913 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6906--6913 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6906--6913 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6906--6913 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6914--6917 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1962] [1963] Underfull \hbox (badness 1546) in paragraph at lines 7040--7043 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7073--7078 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \hbox (badness 10000) in paragraph at lines 7860--7862 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] Underfull \vbox (badness 10000) has occurred while \output is active [1984] [1985] [1986] [1987] Underfull \hbox (badness 10000) in paragraph at lines 8598--8600 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8620--8625 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 1248) in paragraph at lines 9146--9150 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1995] Underfull \hbox (badness 1789) in paragraph at lines 9224--9226 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] Underfull \vbox (badness 5533) has occurred while \output is active [2005] [2006] [2007] Underfull \hbox (badness 1097) in paragraph at lines 10061--10064 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2008] [2009] Underfull \hbox (badness 3000) in paragraph at lines 10197--10202 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] Underfull \hbox (badness 2134) in paragraph at lines 10779--10784 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2018] Underfull \hbox (badness 10000) in paragraph at lines 10835--10840 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10835--10840 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 2469) in paragraph at lines 11329--11333 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11329--11333 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 4060) in paragraph at lines 11745--11748 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2032] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11768--11768 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2033] [2034] [2035] Underfull \hbox (badness 2150) in paragraph at lines 12007--12009 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2036] [2037] [2038] [2039] Underfull \hbox (badness 10000) in paragraph at lines 12226--12230 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12257--12263 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2040] [2041] Underfull \hbox (badness 1009) in paragraph at lines 12451--12463 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2042] Underfull \hbox (badness 4779) in paragraph at lines 12491--12493 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12521--12528 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2043] [2044] [2045] [2046] [2047] [2048] Underfull \hbox (badness 3780) in paragraph at lines 12924--12928 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12940--12943 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2049] [2050] [2051] Underfull \hbox (badness 2302) in paragraph at lines 13145--13147 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2052] [2053] [2054] [2055] [2056] Underfull \hbox (badness 10000) in paragraph at lines 13443--13448 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13452--13455 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2057] Underfull \vbox (badness 10000) has occurred while \output is active [2058] [2059] [2060] [2061] [2062] Underfull \hbox (badness 2932) in paragraph at lines 13876--13883 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13876--13883 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2063] [2064] [2065] [2066] Underfull \hbox (badness 6510) in paragraph at lines 14185--14189 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14192--14195 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14192--14195 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 10000) in paragraph at lines 14858--14863 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14858--14863 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and [2076] Underfull \hbox (badness 1052) in paragraph at lines 14864--14866 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14923--14926 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 10000) in paragraph at lines 15696--15698 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2089] [2090] [2091]) [2092] [2093] [2094] (./KernSmooth-pkg.tex Chapter 15. [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104]) (./MASS-pkg.tex Chapter 16. [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2142] [2143] [2144] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2145] [2146] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2172] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2203] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2204] [2205] [2206] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2253] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2254] [2255] [2256] [2257] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2258] [2259] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2260] [2261] [2262] [2263] [2264] Underfull \hbox (badness 10000) in paragraph at lines 1022--1024 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2265] [2266]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1189--1195 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2267pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2268] [2269] Underfull \hbox (badness 2277) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2270] [2271] Underfull \hbox (badness 1097) in paragraph at lines 1561--1564 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1567--1571 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2272]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1624 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1624 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1625 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1646 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1657 \aliasA{rowSums}{colSums}{rowSums} [2273] [2274] [2275] Underfull \hbox (badness 3547) in paragraph at lines 1876--1879 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2276] [2277] [2278] [2279] [2280] Underfull \hbox (badness 1360) in paragraph at lines 2299--2303 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2281] [2282] [2283] [2284] Underfull \hbox (badness 2368) in paragraph at lines 2615--2619 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2285] [2286] Underfull \hbox (badness 6842) in paragraph at lines 2705--2708 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2287] Underfull \hbox (badness 10000) in paragraph at lines 2992--2996 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2288] [2289] [2290] Underfull \hbox (badness 1173) in paragraph at lines 3202--3204 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3249--3251 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2291] [2292] Underfull \hbox (badness 1354) in paragraph at lines 3448--3451 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2293] [2294] [2295] [2296] [2297] Underfull \hbox (badness 6188) in paragraph at lines 3858--3861 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3861--3864 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2298] [2299] Underfull \hbox (badness 2318) in paragraph at lines 3975--3979 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2300] [2301] Underfull \hbox (badness 5245) in paragraph at lines 4111--4115 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2302] [2303] [2304] [2305] [2306] [2307] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4533--4533 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4536--4536 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2308] [2309] Underfull \hbox (badness 1931) in paragraph at lines 4768--4770 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2310] [2311] [2312] [2313] [2314] Underfull \hbox (badness 1005) in paragraph at lines 5074--5079 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5074--5079 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5093--5096 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2315] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5140--5140 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2316] Underfull \hbox (badness 3229) in paragraph at lines 5241--5250 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 10000) in paragraph at lines 5283--5285 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use [2317] Underfull \hbox (badness 4995) in paragraph at lines 5288--5291 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5298--5301 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2318] [2319] [2320] [2321] [2322] Underfull \hbox (badness 1014) in paragraph at lines 5675--5678 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2323] [2324] [2325] [2326] Underfull \hbox (badness 10000) in paragraph at lines 5990--5993 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2327] Underfull \hbox (badness 2478) in paragraph at lines 6102--6107 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2328] Underfull \hbox (badness 10000) in paragraph at lines 6110--6113 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2329] Underfull \hbox (badness 10000) in paragraph at lines 6302--6305 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2330] Underfull \hbox (badness 10000) in paragraph at lines 6400--6403 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2331] Underfull \hbox (badness 10000) in paragraph at lines 6475--6478 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2332] Underfull \hbox (badness 2050) in paragraph at lines 6551--6554 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2333] [2334] [2335] Underfull \hbox (badness 6268) in paragraph at lines 6757--6760 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2336] Underfull \hbox (badness 6268) in paragraph at lines 6781--6785 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2337]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6874 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 6967--6969 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 6972--6975 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6977--6980 [2338]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7050 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7158 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7258 ...tcrossprod}{matrix-products}{tcrossprod} [2339pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7362 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7362 ] [2340] Underfull \hbox (badness 10000) in paragraph at lines 7432--7437 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7432--7437 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7441--7443 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7443--7445 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7447--7448 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2341] [2342] Underfull \hbox (badness 1430) in paragraph at lines 7591--7596 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2343] Underfull \hbox (badness 10000) in paragraph at lines 7662--7665 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2344] Underfull \hbox (badness 10000) in paragraph at lines 7714--7716 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2345] [2346] Underfull \vbox (badness 10000) has occurred while \output is active [2347] Underfull \hbox (badness 2478) in paragraph at lines 7918--7923 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7926--7929 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2348] [2349] Underfull \hbox (badness 5924) in paragraph at lines 8120--8122 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2350]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8160 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8160 \HeaderA{norm}{Matrix Norms}{norm} [2351] [2352] Underfull \hbox (badness 10000) in paragraph at lines 8433--8436 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2353] Underfull \hbox (badness 10000) in paragraph at lines 8523--8526 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2354] Underfull \hbox (badness 10000) in paragraph at lines 8599--8602 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2355] Underfull \vbox (badness 10000) has occurred while \output is active [2356] Underfull \hbox (badness 10000) in paragraph at lines 8725--8727 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8730--8733 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2357] [2358] [2359] [2360]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8962 \aliasA{qr}{qr-methods}{qr} [2361] [2362] [2363] [2364]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9258 ... the Reciprocal Condition Number}{rcond} [2365] [2366] [2367] [2368] Underfull \hbox (badness 2351) in paragraph at lines 9562--9570 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9562--9570 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9562--9570 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2369] [2370] [2371] [2372]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9835 \aliasA{solve}{solve-methods}{solve} [2373] Underfull \hbox (badness 10000) in paragraph at lines 9998--10005 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2374] Underfull \hbox (badness 4403) in paragraph at lines 10059--10062 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10129--10132 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2375] Underfull \hbox (badness 10000) in paragraph at lines 10165--10168 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10176--10180 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2376] [2377] [2378] [2379] [2380] [2381] [2382] [2383] Underfull \hbox (badness 10000) in paragraph at lines 10765--10773 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10765--10773 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2384]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.10831 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2385] [2386] Underfull \hbox (badness 5036) in paragraph at lines 11017--11019 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2387] [2388] Underfull \hbox (badness 10000) in paragraph at lines 11224--11227 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2389] Underfull \vbox (badness 10000) has occurred while \output is active [2390] [2391] [2392] Underfull \hbox (badness 10000) in paragraph at lines 11493--11498 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2393] Underfull \hbox (badness 2057) in paragraph at lines 11573--11575 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2394] [2395] Underfull \hbox (badness 1831) in paragraph at lines 11748--11754 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2396] Underfull \hbox (badness 1902) in paragraph at lines 11783--11787 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2397] [2398] [2399] [2400] [2401] [2402] Underfull \hbox (badness 6910) in paragraph at lines 12296--12298 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2403] [2404] [2405]) (./boot-pkg.tex [2406] Chapter 18. [2407] [2408] [2409] [2410] [2411] [2412] [2413] [2414] [2415] [2416] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2417] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2418] Underfull \vbox (badness 10000) has occurred while \output is active [2419] [2420] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2421] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2422] [2423] [2424] [2425] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2426] [2427] [2428] [2429] [2430] [2431] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2432] [2433] Underfull \vbox (badness 10000) has occurred while \output is active [2434] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2435] [2436] [2437] [2438] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2439] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2440] [2441] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2442] [2443] [2444] [2445] [2446] [2447] [2448] [2449] [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] [2461] [2462] [2463] [2464] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2465] [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] [2474] [2475] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2476] [2477] [2478] [2479] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2480] [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2491] [2492] [2493] [2494] [2495] [2496] [2497] [2498] [2499] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2500] [2501] [2502] [2503] [2504] [2505] [2506] [2507] [2508] [2509]) (./class-pkg.tex [2510] Chapter 19. [2511] [2512] [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525] [2526]) (./cluster-pkg.tex Chapter 20. [2527] [2528] [2529] [2530] [2531] Underfull \vbox (badness 7777) has occurred while \output is active [2532] [2533] [2534] [2535] [2536] Underfull \hbox (badness 4144) in paragraph at lines 689--692 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2537] Underfull \hbox (badness 1412) in paragraph at lines 772--777 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2538] [2539] Underfull \hbox (badness 10000) in paragraph at lines 865--867 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2540] [2541] Underfull \hbox (badness 10000) in paragraph at lines 976--978 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 990--994 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2542] [2543] [2544] Underfull \hbox (badness 6110) in paragraph at lines 1191--1195 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2545] [2546] [2547] Underfull \hbox (badness 10000) in paragraph at lines 1460--1463 [2548] [2549] Underfull \hbox (badness 2503) in paragraph at lines 1572--1575 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] Underfull \hbox (badness 10000) in paragraph at lines 2166--2169 Underfull \hbox (badness 10000) in paragraph at lines 2180--2186 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2558] [2559] [2560] [2561] Underfull \hbox (badness 6675) in paragraph at lines 2415--2417 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2562] [2563] [2564] [2565] [2566] [2567] [2568] Underfull \hbox (badness 2980) in paragraph at lines 2906--2910 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2569] [2570] [2571] [2572] [2573] Underfull \hbox (badness 1142) in paragraph at lines 3247--3250 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2574] [2575] Underfull \hbox (badness 1142) in paragraph at lines 3366--3369 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2576] [2577] [2578] [2579] Underfull \hbox (badness 2582) in paragraph at lines 3589--3594 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2580] Underfull \hbox (badness 3209) in paragraph at lines 3651--3656 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3651--3656 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2581] [2582] [2583] [2584] Underfull \hbox (badness 10000) in paragraph at lines 3943--3945 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2585] [2586] [2587] [2588] Underfull \hbox (badness 2626) in paragraph at lines 4167--4172 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2589] Underfull \hbox (badness 1383) in paragraph at lines 4245--4250 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 10000) in paragraph at lines 4688--4690 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2597] [2598]) (./codetools-pkg.tex Chapter 21. [2599] [2600] [2601] [2602] [2603]) (./foreign-pkg.tex [2604] Chapter 22. [2605] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2606] [2607] [2608] [2609] [2610] [2611] [2612] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to [2613] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2614] [2615] [2616] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2617] [2618] [2619] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2620] [2621] [2622] [2623] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2624] [2625]) (./lattice-pkg.tex [2626] Chapter 23. [2627] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2643] Underfull \vbox (badness 4416) has occurred while \output is active [2644] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2645] [2646] [2647] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2648] [2649] [2650] [2651] [2652] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] [2661] [2662] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2663] Underfull \hbox (badness 2486) in paragraph at lines 2970--2974 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2664] [2665] [2666] [2667] [2668] [2669] [2670]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3444 \aliasA{parallel}{B\_08\_splom}{parallel} [2671] [2672] [2673] [2674] [2675] [2676] [2677] Underfull \hbox (badness 5696) in paragraph at lines 3935--3939 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2678] [2679] Underfull \hbox (badness 1173) in paragraph at lines 4074--4078 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4101--4103 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2680] [2681] [2682] Underfull \hbox (badness 3492) in paragraph at lines 4297--4307 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4322--4325 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4325--4327 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2683] [2684] [2685] [2686] [2687] [2688] [2689] [2690] [2691] [2692] Underfull \hbox (badness 6157) in paragraph at lines 5048--5051 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2693] [2694] [2695] [2696] [2697] [2698] Underfull \hbox (badness 10000) in paragraph at lines 5501--5504 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5501--5504 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2699] [2700] [2701] [2702] [2703] Underfull \hbox (badness 4805) in paragraph at lines 5863--5867 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5874--5881 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5874--5881 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2704] [2705] [2706] [2707] Underfull \hbox (badness 4242) in paragraph at lines 6174--6179 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6174--6179 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2708] [2709] Underfull \hbox (badness 2310) in paragraph at lines 6290--6295 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2710] [2711] [2712] [2713] [2714] [2715] [2716] [2717] [2718] [2719] [2720] Underfull \hbox (badness 3168) in paragraph at lines 7072--7076 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2721] [2722] [2723] [2724] Underfull \hbox (badness 2012) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2725] [2726] Underfull \hbox (badness 3333) in paragraph at lines 7515--7517 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2727] [2728] [2729] Underfull \vbox (badness 10000) has occurred while \output is active [2730] [2731] [2732] Underfull \hbox (badness 1436) in paragraph at lines 7929--7935 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2733] [2734] [2735] [2736] [2737] [2738] [2739] [2740] Underfull \hbox (badness 10000) in paragraph at lines 8487--8490 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2741] Underfull \hbox (badness 1092) in paragraph at lines 8533--8535 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2742] [2743] Underfull \hbox (badness 3895) in paragraph at lines 8694--8697 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2744] Underfull \hbox (badness 1515) in paragraph at lines 8770--8774 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2745] [2746] Underfull \hbox (badness 6316) in paragraph at lines 8876--8881 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8893--8896 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2747] [2748] [2749] [2750] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9181--9185 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2751] [2752] [2753] [2754] [2755] [2756] [2757] Underfull \hbox (badness 2310) in paragraph at lines 9639--9643 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9644--9647 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2758] [2759] [2760]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9870 \aliasA{melanoma}{H\_melanoma}{melanoma} [2761] [2762] [2763] Underfull \hbox (badness 4144) in paragraph at lines 10094--10097 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10094--10097 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2764] [2765]) (./mgcv-pkg.tex [2766] Chapter 24. [2767] [2768] [2769] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2770] [2771] [2772] Underfull \vbox (badness 5345) has occurred while \output is active [2773] Underfull \hbox (badness 10000) in paragraph at lines 377--384 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 377--384 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2774] [2775] [2776] [2777] [2778] [2779] Underfull \hbox (badness 1406) in paragraph at lines 702--703 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2780] [2781] Underfull \hbox (badness 1158) in paragraph at lines 812--814 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2782] Underfull \hbox (badness 1259) in paragraph at lines 875--876 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2783] Underfull \vbox (badness 10000) has occurred while \output is active [2784] [2785] [2786] [2787] Underfull \hbox (badness 1281) in paragraph at lines 1159--1160 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2788] [2789] Underfull \vbox (badness 10000) has occurred while \output is active [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] [2799] [2800] [2801] [2802] [2803] [2804] [2805] [2806] [2807] Underfull \hbox (badness 1142) in paragraph at lines 2360--2364 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2808] Underfull \hbox (badness 1043) in paragraph at lines 2386--2391 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2809] [2810] [2811] [2812] [2813] Underfull \vbox (badness 10000) has occurred while \output is active [2814] Underfull \vbox (badness 10000) has occurred while \output is active [2815] Underfull \vbox (badness 10000) has occurred while \output is active [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] Underfull \hbox (badness 10000) in paragraph at lines 3821--3825 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2832] [2833] Underfull \vbox (badness 10000) has occurred while \output is active [2834] Underfull \vbox (badness 10000) has occurred while \output is active [2835] [2836] Underfull \hbox (badness 1184) in paragraph at lines 4107--4111 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] [2848] Underfull \hbox (badness 1142) in paragraph at lines 4828--4832 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2849] Underfull \hbox (badness 1231) in paragraph at lines 4932--4934 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2850] [2851] [2852] Underfull \vbox (badness 10000) has occurred while \output is active [2853] [2854] [2855] [2856] Underfull \hbox (badness 2181) in paragraph at lines 5376--5377 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2857] [2858] [2859] [2860] [2861] [2862] [2863] Underfull \hbox (badness 10000) in paragraph at lines 5765--5766 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2864] [2865] [2866] [2867] [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 1142) in paragraph at lines 6350--6354 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2875] [2876] [2877] Underfull \vbox (badness 10000) has occurred while \output is active [2878] [2879] [2880] [2881] Underfull \hbox (badness 1087) in paragraph at lines 6722--6723 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2882] [2883] Underfull \vbox (badness 10000) has occurred while \output is active [2884] Underfull \vbox (badness 10000) has occurred while \output is active [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897] Underfull \hbox (badness 1242) in paragraph at lines 7668--7669 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2898] [2899] [2900] [2901] [2902] [2903] [2904] [2905] [2906] [2907] [2908] Underfull \hbox (badness 6001) in paragraph at lines 8308--8310 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2909] [2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] Underfull \vbox (badness 10000) has occurred while \output is active [2919] [2920] Underfull \hbox (badness 1038) in paragraph at lines 9057--9060 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9057--9060 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2921] Underfull \hbox (badness 10000) in paragraph at lines 9113--9116 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2922] [2923] [2924] [2925] [2926] [2927] [2928] [2929] [2930] [2931] [2932] Underfull \hbox (badness 1852) in paragraph at lines 9784--9787 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2933] [2934] Underfull \hbox (badness 1852) in paragraph at lines 9950--9953 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2935] [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] Underfull \vbox (badness 10000) has occurred while \output is active [2938] Underfull \hbox (badness 1205) in paragraph at lines 10182--10184 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10182--10184 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10188--10193 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2939] [2940] Underfull \hbox (badness 1205) in paragraph at lines 10272--10274 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10272--10274 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2941] [2942] [2943] Underfull \hbox (badness 1253) in paragraph at lines 10471--10473 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2944] [2945] [2946] [2947] [2948] Underfull \hbox (badness 4792) in paragraph at lines 10732--10735 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10732--10735 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2949] [2950] Underfull \hbox (badness 10000) in paragraph at lines 10839--10842 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] Underfull \vbox (badness 10000) has occurred while \output is active [2962] [2963] Underfull \hbox (badness 3861) in paragraph at lines 11625--11628 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2964] [2965] Underfull \hbox (badness 1320) in paragraph at lines 11740--11745 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2966] [2967] Underfull \hbox (badness 1975) in paragraph at lines 11846--11851 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2968] Underfull \hbox (badness 1762) in paragraph at lines 11935--11947 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2969] [2970] [2971] Underfull \vbox (badness 10000) has occurred while \output is active [2972] Underfull \hbox (badness 7667) in paragraph at lines 12147--12153 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2973] Underfull \hbox (badness 10000) in paragraph at lines 12188--12189 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2974] [2975] [2976] [2977] [2978] Underfull \hbox (badness 10000) in paragraph at lines 12464--12466 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2979] [2980] Underfull \hbox (badness 10000) in paragraph at lines 12594--12595 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2981] [2982] Underfull \hbox (badness 1436) in paragraph at lines 12732--12739 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [2983] [2984] Underfull \hbox (badness 10000) in paragraph at lines 12826--12827 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2985] [2986] [2987] [2988] [2989] [2990] [2991] Underfull \vbox (badness 10000) has occurred while \output is active [2992] [2993] [2994] Underfull \hbox (badness 10000) in paragraph at lines 13414--13420 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13414--13420 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [2995] [2996] [2997] Underfull \vbox (badness 10000) has occurred while \output is active [2998] Underfull \vbox (badness 10000) has occurred while \output is active [2999] [3000] Underfull \hbox (badness 10000) in paragraph at lines 13757--13758 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3001] [3002] [3003] [3004] Underfull \hbox (badness 3895) in paragraph at lines 14018--14021 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3005] Underfull \hbox (badness 10000) in paragraph at lines 14063--14065 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3006] [3007] [3008] [3009] [3010] Underfull \hbox (badness 1371) in paragraph at lines 14337--14343 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14377--14381 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14377--14381 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14377--14381 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3011] [3012] [3013] [3014] Underfull \hbox (badness 2326) in paragraph at lines 14582--14589 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3015] Underfull \hbox (badness 2158) in paragraph at lines 14667--14667 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] Underfull \hbox (badness 1796) in paragraph at lines 16325--16328 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] [3052]) (./nlme-pkg.tex Chapter 25. [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3083] [3084] [3085] [3086] Underfull \hbox (badness 10000) in paragraph at lines 2256--2262 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.3189 ] [3102] [3103] [3104] [3105] [3106] [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] Underfull \hbox (badness 1067) in paragraph at lines 4414--4419 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] Underfull \hbox (badness 10000) in paragraph at lines 5160--5164 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3132] [3133] [3134] [3135] [3136] [3137] [3138] Underfull \hbox (badness 10000) in paragraph at lines 5592--5595 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3139] [3140] [3141] [3142] [3143] [3144] [3145] Underfull \hbox (badness 10000) in paragraph at lines 5973--5978 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3146] [3147] [3148] [3149] Underfull \hbox (badness 1490) in paragraph at lines 6243--6254 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3150] Underfull \hbox (badness 10000) in paragraph at lines 6307--6309 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3151] [3152] [3153] [3154] [3155] [3156] Underfull \hbox (badness 10000) in paragraph at lines 6721--6723 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3157] [3158] [3159] [3160] Underfull \hbox (badness 10000) in paragraph at lines 6994--7001 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3161] [3162] [3163] [3164] Underfull \hbox (badness 10000) in paragraph at lines 7254--7259 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172] [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] Underfull \hbox (badness 10000) in paragraph at lines 8521--8523 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3184]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8572 \aliasA{sigma}{lmeObject}{sigma} [3185] [3186] [3187] [3188] Underfull \hbox (badness 10000) in paragraph at lines 8802--8809 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] Underfull \hbox (badness 10000) in paragraph at lines 9324--9331 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3197] [3198] [3199] [3200] [3201]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] Underfull \hbox (badness 1596) in paragraph at lines 10459--10485 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3214] [3215] Underfull \hbox (badness 1490) in paragraph at lines 10597--10603 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3216] [3217] [3218] [3219] Underfull \hbox (badness 10000) in paragraph at lines 10838--10840 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] Underfull \hbox (badness 1286) in paragraph at lines 13736--13743 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 1215) in paragraph at lines 14282--14284 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] [3282]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} [3283] [3284] [3285] [3286] [3287] [3288] [3289] [3290] [3291] [3292] [3293] [3294] Underfull \hbox (badness 1067) in paragraph at lines 15931--15936 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3295] [3296] [3297] [3298] Underfull \hbox (badness 1448) in paragraph at lines 16174--16183 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] Underfull \hbox (badness 1728) in paragraph at lines 16879--16882 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3309] [3310] [3311] [3312] [3313] Underfull \hbox (badness 8056) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3314] Underfull \hbox (badness 2913) in paragraph at lines 17278--17286 \T1/ptm/m/n/10 for \T1/zi4/m/it/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 varConstPower \T1/ptm/m/n/10 , [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] Underfull \hbox (badness 10000) in paragraph at lines 18060--18070 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18060--18070 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3326] [3327] [3328] [3329] [3330] Underfull \hbox (badness 5036) in paragraph at lines 18384--18393 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343]) (./nnet-pkg.tex [3344] Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3345] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3346] [3347] [3348] [3349] [3350] [3351] [3352]) (./rpart-pkg.tex Chapter 27. [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381]) (./spatial-pkg.tex [3382] Chapter 28. [3383] [3384] [3385] [3386] [3387] [3388] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401]) (./survival-pkg.tex [3402] Chapter 29. [3403] [3404] [3405] [3406]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} [3407] [3408] [3409] [3410] [3411] Underfull \vbox (badness 10000) has occurred while \output is active [3412] [3413] [3414] [3415] [3416] [3417] Underfull \hbox (badness 1097) in paragraph at lines 975--977 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3418] [3419] [3420]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1177 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3421] Underfull \hbox (badness 10000) in paragraph at lines 1224--1228 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1798--1813 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3430] [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] [3442] [3443] [3444] [3445] Underfull \vbox (badness 10000) has occurred while \output is active [3446] [3447] [3448] Underfull \hbox (badness 1389) in paragraph at lines 3149--3151 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3449] [3450] [3451] [3452] Overfull \hbox (467.89665pt too wide) in alignment at lines 3428--3428 [] [] [3453] Underfull \vbox (badness 10000) has occurred while \output is active [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] Underfull \hbox (badness 5274) in paragraph at lines 4935--4937 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3476] [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] Underfull \vbox (badness 10000) has occurred while \output is active [3487] [3488] [3489] Underfull \hbox (badness 1281) in paragraph at lines 5962--5965 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3490] [3491] [3492] [3493] [3494] [3495] [3496] [3497]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.6470 ...ata from a soldering experiment}{solder} [3498] Underfull \vbox (badness 10000) has occurred while \output is active [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515] [3516] [3517] Underfull \hbox (badness 10000) in paragraph at lines 7862--7871 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3518] [3519] Underfull \hbox (badness 1038) in paragraph at lines 8018--8024 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3520] [3521] [3522] [3523] [3524] Underfull \hbox (badness 10000) in paragraph at lines 8381--8386 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535] Underfull \hbox (badness 1354) in paragraph at lines 9263--9267 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3536] [3537] [3538] [3539] [3540] [3541] [3542] [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] [3555] [3556] [3557] [3558]) No file fullrefman.ind. (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.tree} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.as.Rul.dsTMatrix.Rul.listw} has been referenced but does not exist, replaced by 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one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/cm-super/cm-super-ts1.enc}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dist/font s/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb> Output written on fullrefman.pdf (3561 pages, 9182393 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support). Scanning input file fullrefman.idx............................done (24806 entries accepted, 77 rejected). Sorting entries.........................................................................................................................................................................................................................................................................................done (416396 comparisons). Generating output file fullrefman.ind...........................done (25915 lines written, 116 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. 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[3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]["long.double"] \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 316--319 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 552--558 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 2671) in paragraph at lines 1200--1203 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1994--1994 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2435--2440 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2435--2440 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3821--3823 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4062--4062 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5098--5100 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6273--6273 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [93] [94] [95] [96] [97] [98] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6737--6739 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 6902--6905 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [101] [102] [103] Underfull \hbox (badness 6063) in paragraph at lines 7084--7090 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7084--7090 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7084--7090 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7084--7090 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or Underfull \hbox (badness 1303) in paragraph at lines 7146--7153 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the [104] Underfull \hbox (badness 2111) in paragraph at lines 7157--7162 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] Underfull \hbox (badness 1077) in paragraph at lines 7473--7479 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7473--7479 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [109] [110] [111] [112] [113] Underfull \hbox (badness 2096) in paragraph at lines 7815--7819 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [114] [115] Underfull \hbox (badness 2351) in paragraph at lines 7933--7936 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [116] [117] [118] [119] [120] Underfull \hbox (badness 4479) in paragraph at lines 8262--8273 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [121] [122] [123] [124] [125] [126] Underfull \hbox (badness 1629) in paragraph at lines 8711--8723 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8711--8723 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8711--8723 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1178) in paragraph at lines 9467--9471 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] Underfull \hbox (badness 1735) in paragraph at lines 10636--10640 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [154] [155] [156] [157] [158] [159] [160] Underfull \hbox (badness 6396) in paragraph at lines 11086--11094 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11086--11094 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 4569) in paragraph at lines 12204--12208 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12204--12208 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 2253) in paragraph at lines 13879--13881 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [199] Underfull \hbox (badness 1565) in paragraph at lines 13952--13956 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [200] Underfull \hbox (badness 4927) in paragraph at lines 13996--13998 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [201] Underfull \hbox (badness 3148) in paragraph at lines 14094--14099 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [202] Underfull \hbox (badness 1466) in paragraph at lines 14141--14144 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [203] Underfull \hbox (badness 10000) in paragraph at lines 14268--14272 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14279--14282 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [204] [205] [206] [207] [208] Underfull \hbox (badness 3965) in paragraph at lines 14573--14577 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Underfull \hbox (badness 4429) in paragraph at lines 15351--15354 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [220] Underfull \hbox (badness 10000) in paragraph at lines 15457--15459 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15457--15459 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see [221] Underfull \hbox (badness 10000) in paragraph at lines 15479--15484 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15479--15484 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15491--15495 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15491--15495 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want Underfull \hbox (badness 2035) in paragraph at lines 15530--15534 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [222] [223] [224] [225] [226] [227] [228] [229] [230] Underfull \hbox (badness 2452) in paragraph at lines 16130--16134 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16130--16134 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [231] [232] [233] Underfull \hbox (badness 1092) in paragraph at lines 16303--16308 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [234] [235] [236] Underfull \hbox (badness 6741) in paragraph at lines 16553--16557 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [237] [238] [239] [240] [241] [242] [243] [244] [245] Underfull \vbox (badness 10000) has occurred while \output is active [246] [247] [248] [249] [250] [251] [252] [253] [254] Underfull \hbox (badness 1478) in paragraph at lines 17863--17866 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [255] [256] [257] [258] Underfull \hbox (badness 10000) in paragraph at lines 18123--18125 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [259] [260] [261] [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1442) in paragraph at lines 18723--18725 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [268] [269] [270] [271] [272] [273] [274] Underfull \hbox (badness 1248) in paragraph at lines 19289--19292 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [275] [276] [277] [278] [279] Underfull \hbox (badness 4739) in paragraph at lines 19552--19554 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [280] [281] [282] [283] [284] [285] Underfull \hbox (badness 1596) in paragraph at lines 19971--19976 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [286] [287] [288] [289] [290] [291] [292] [293] [294] Underfull \hbox (badness 2469) in paragraph at lines 20576--20581 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [295] Underfull \hbox (badness 10000) in paragraph at lines 20590--20597 [][][]$\T1/zi4/m/n/10 https : / / curl . haxx . se / docs / sslcerts . html$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20664--20668 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20664--20668 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [296] [297] [298] Underfull \hbox (badness 1014) in paragraph at lines 20834--20839 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] Underfull \hbox (badness 1264) in paragraph at lines 21681--21686 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: Underfull \hbox (badness 4441) in paragraph at lines 21710--21713 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] Underfull \hbox (badness 6047) in paragraph at lines 22457--22459 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] Underfull \hbox (badness 2790) in paragraph at lines 24028--24031 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24028--24031 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [346] [347] [348] [349] Underfull \hbox (badness 1194) in paragraph at lines 24314--24317 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [350] [351] Underfull \hbox (badness 2368) in paragraph at lines 24521--24527 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24521--24527 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 10000) in paragraph at lines 24903--24906 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [358] [359] [360] [361] [362] [363] [364] [365] [366] Underfull \hbox (badness 10000) in paragraph at lines 25520--25522 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 1038) in paragraph at lines 26365--26373 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26365--26373 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26365--26373 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26374--26377 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26398--26400 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [379] [380] Underfull \hbox (badness 2142) in paragraph at lines 26539--26543 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26596--26601 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [381] [382] [383] Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26901--26904 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [384] Underfull \hbox (badness 2689) in paragraph at lines 26927--26929 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 26962--26967 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 26968--26979 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 26968--26979 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 26980--26983 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [385] [386] [387] [388] [389] [390] [391] [392] Underfull \hbox (badness 10000) in paragraph at lines 27527--27530 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [393] Underfull \hbox (badness 7925) in paragraph at lines 27607--27611 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27607--27611 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27612--27621 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 2726) in paragraph at lines 28473--28476 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] Underfull \vbox (badness 10000) has occurred while \output is active [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 1533) in paragraph at lines 30206--30209 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [431] [432] [433] Underfull \hbox (badness 1163) in paragraph at lines 30369--30380 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] Underfull \hbox (badness 10000) in paragraph at lines 31953--31957 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 31953--31957 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [456] Underfull \hbox (badness 3557) in paragraph at lines 31975--31977 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1701) in paragraph at lines 31978--31982 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tp : / / www . pcre . org / [457] [458] [459] [460] [461] [462] [463] [464] Underfull \hbox (badness 1655) in paragraph at lines 32533--32535 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] Underfull \hbox (badness 2261) in paragraph at lines 33721--33726 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [482] Underfull \hbox (badness 10000) in paragraph at lines 33748--33754 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33748--33754 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] Underfull \vbox (badness 10000) has occurred while \output is active [520] [521] [522] [523] [524] [525] [526] [527] Underfull \hbox (badness 1072) in paragraph at lines 36936--36940 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 36941--36945 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 36971--36977 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 36971--36977 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 36971--36977 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 36983--36990 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [528] [529] [530] [531] Underfull \hbox (badness 2644) in paragraph at lines 37215--37219 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [532] [533] Underfull \hbox (badness 1142) in paragraph at lines 37367--37373 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 1565) in paragraph at lines 38644--38646 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [552] [553] [554] [555] [556] [557] [558] [559] [560] Underfull \hbox (badness 1137) in paragraph at lines 39234--39240 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39253--39258 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [561] [562] Underfull \hbox (badness 1616) in paragraph at lines 39366--39371 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [563] [564] [565] [566] [567] [568] [569] [570] Underfull \hbox (badness 1472) in paragraph at lines 39893--39896 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] Underfull \hbox (badness 10000) in paragraph at lines 40812--40816 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [584] [585] [586] [587] Underfull \hbox (badness 10000) in paragraph at lines 41063--41066 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [588] [589] [590] Underfull \hbox (badness 10000) in paragraph at lines 41247--41251 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [591] [592] [593] [594] [595] [596] [597] [598] Underfull \hbox (badness 10000) in paragraph at lines 41868--41871 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] Underfull \hbox (badness 1990) in paragraph at lines 42790--42798 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 42790--42798 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [612] [613] [614] [615] [616] [617] [618] [619] Underfull \hbox (badness 1917) in paragraph at lines 43295--43302 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [620] [621] [622] [623] [624] [625] Underfull \hbox (badness 2452) in paragraph at lines 43747--43753 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [626] [627] [628] [629] [630] [631] Underfull \hbox (badness 3668) in paragraph at lines 44120--44122 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [632] Underfull \hbox (badness 2401) in paragraph at lines 44250--44254 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [633] [634] [635] Underfull \hbox (badness 2111) in paragraph at lines 44439--44444 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 44460--44465 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [636] [637] [638] [639] [640] [641] [642] [643] [644] Underfull \hbox (badness 5417) in paragraph at lines 45048--45052 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [645] Underfull \hbox (badness 10000) in paragraph at lines 45109--45113 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [646]) (./compiler-pkg.tex Chapter 2. [647] [648] [649] [650]) (./datasets-pkg.tex Chapter 3. [651] [652] [653] [654] [655] [656] Underfull \vbox (badness 1472) has occurred while \output is active [657] [658] [659] [660] [661] [662] [663] [664] [665] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] Overfull \vbox (4.26088pt too high) has occurred while \output is active [688] [689] [690] [691] [692] [693] Overfull \vbox (13.87083pt too high) has occurred while \output is active [694] Underfull \vbox (badness 2376) has occurred while \output is active [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] Overfull \vbox (10.49593pt too high) has occurred while \output is active [711] Overfull \vbox (15.49593pt too high) has occurred while \output is active [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]) (./grDevices-pkg.tex Chapter 4. [727] [728] [729] [730] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [731] [732] [733] [734] [735] [736] [737] [738] [739] Underfull \hbox (badness 1424) in paragraph at lines 892--894 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [740] [741] [742] [743] [744] Underfull \hbox (badness 5175) in paragraph at lines 1186--1188 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [745] [746] Underfull \hbox (badness 2512) in paragraph at lines 1305--1307 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [747] Underfull \hbox (badness 1852) in paragraph at lines 1399--1402 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [748] [749] [750] Underfull \hbox (badness 1490) in paragraph at lines 1605--1610 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [751] [752] [753] [754] [755] [756] Underfull \hbox (badness 1325) in paragraph at lines 2011--2021 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [757] Underfull \hbox (badness 10000) in paragraph at lines 2123--2125 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [758] [759] [760] Underfull \hbox (badness 6758) in paragraph at lines 2302--2305 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [761] [762] [763] [764] [765] [766] [767] [768] [769] Underfull \hbox (badness 10000) in paragraph at lines 2910--2911 Underfull \vbox (badness 10000) has occurred while \output is active [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 10000) in paragraph at lines 3484--3489 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [778] [779] [780] [781] [782] [783] [784] Underfull \vbox (badness 10000) has occurred while \output is active [785] Underfull \hbox (badness 10000) in paragraph at lines 3983--3986 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 10000) in paragraph at lines 4719--4724 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 4181) in paragraph at lines 4719--4724 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in [796] Underfull \vbox (badness 10000) has occurred while \output is active [797] [798] Underfull \hbox (badness 1584) in paragraph at lines 4875--4877 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4879--4886 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [799] [800] [801] [802] Underfull \hbox (badness 1377) in paragraph at lines 5185--5190 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [803] Underfull \hbox (badness 1418) in paragraph at lines 5261--5268 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5279--5281 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [804] Underfull \hbox (badness 1377) in paragraph at lines 5390--5395 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [805] Underfull \hbox (badness 7344) in paragraph at lines 5459--5461 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [806] [807] Underfull \hbox (badness 2035) in paragraph at lines 5596--5605 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5596--5605 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5596--5605 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [808] Underfull \hbox (badness 10000) in paragraph at lines 5664--5671 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5664--5671 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . Underfull \vbox (badness 10000) has occurred while \output is active [809] [810] [811] Underfull \hbox (badness 1546) in paragraph at lines 5806--5814 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [812] [813] [814] [815] [816] [817] [818] [819] Underfull \hbox (badness 10000) in paragraph at lines 6344--6347 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [820] [821] [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] Underfull \hbox (badness 1189) in paragraph at lines 7169--7171 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [832] Underfull \hbox (badness 10000) in paragraph at lines 7273--7275 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [833] [834] [835] [836] Underfull \hbox (badness 3780) in paragraph at lines 7580--7586 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [837] [838] [839] Underfull \hbox (badness 2680) in paragraph at lines 7782--7784 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [840] [841] [842]) (./graphics-pkg.tex Chapter 5. [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] Underfull \vbox (badness 10000) has occurred while \output is active [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] Underfull \hbox (badness 1728) in paragraph at lines 2328--2330 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [879] Underfull \hbox (badness 1009) in paragraph at lines 2421--2428 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] Underfull \hbox (badness 3229) in paragraph at lines 4596--4601 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [913] [914] [915] [916] Underfull \hbox (badness 10000) in paragraph at lines 5026--5032 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5026--5032 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [917] [918] Underfull \hbox (badness 10000) in paragraph at lines 5157--5160 [919 ] Underfull \hbox (badness 10000) in paragraph at lines 5218--5220 [920 ] [921] Underfull \hbox (badness 10000) in paragraph at lines 5408--5410 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [922] [923] [924] [925] [926] [927] [928] [929]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5890 \aliasA{plot}{plot.default}{plot} [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6795--6796 [][] [943 ] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] Underfull \hbox (badness 2012) in paragraph at lines 7620--7623 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 10000) in paragraph at lines 8886--8888 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8888--8890 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [975]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8968 \HeaderA{units}{Graphical Units}{units} [976] [977] [978] [979]) (./grid-pkg.tex [980] Chapter 6. [981] [982] [983] [984] [985] [986] [987] [988] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [989] [990] [991] [992] [993] [994] [995] [996] [997] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] Underfull \vbox (badness 10000) has occurred while \output is active [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] Underfull \hbox (badness 1067) in paragraph at lines 4487--4490 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1051] [1052] [1053] [1054] Underfull \hbox (badness 7256) in paragraph at lines 4732--4734 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] Underfull \hbox (badness 1824) in paragraph at lines 6604--6607 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1084] [1085] [1086] [1087]) (./methods-pkg.tex [1088] Chapter 7. [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] Underfull \vbox (badness 10000) has occurred while \output is active [1097] Underfull \vbox (badness 10000) has occurred while \output is active [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1115] [1116] [1117] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1118] [1119] [1120] [1121] [1122] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1123] [1124] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1132] [1133] [1134] [1135] [1136] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1137] [1138] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \vbox (badness 10000) has occurred while \output is active [1157] Underfull \vbox (badness 10000) has occurred while \output is active [1158] [1159] [1160] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1161] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1162] [1163] [1164] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1173] [1174] [1175] [1176] Underfull \vbox (badness 10000) has occurred while \output is active [1177] [1178] [1179]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1180] [1181] [1182]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1183] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1184] [1185] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1219] [1220] [1221] [1222] [1223] [1224] [1225] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1226] [1227] [1228]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \hbox (badness 3386) in paragraph at lines 1393--1396 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1249] [1250] [1251]) (./splines-pkg.tex [1252] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266]) (./stats-pkg.tex Chapter 10. [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1280] [1281] [1282] [1283] [1284] [1285] [1286] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1287] [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] Underfull \hbox (badness 2503) in paragraph at lines 3486--3489 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] Underfull \hbox (badness 1127) in paragraph at lines 4402--4405 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1332] [1333] [1334] [1335] [1336] Underfull \hbox (badness 3989) in paragraph at lines 4741--4748 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2556) in paragraph at lines 5377--5380 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5394--5396 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1346] [1347] [1348] [1349] [1350] [1351] Underfull \hbox (badness 2503) in paragraph at lines 5791--5795 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] Underfull \hbox (badness 7081) in paragraph at lines 6585--6588 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6589--6591 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 10000) in paragraph at lines 7435--7438 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] Underfull \vbox (badness 10000) has occurred while \output is active [1398] [1399] [1400] [1401] Underfull \hbox (badness 2626) in paragraph at lines 9114--9117 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1402] [1403] Underfull \hbox (badness 2503) in paragraph at lines 9221--9225 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 4518) in paragraph at lines 10557--10562 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1423] [1424] [1425] [1426] [1427] Underfull \hbox (badness 2142) in paragraph at lines 10918--10921 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10937--10940 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1428] Underfull \hbox (badness 1708) in paragraph at lines 10999--11003 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 1694) in paragraph at lines 11395--11398 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11879 \aliasA{hat}{influence.measures}{hat} [1442] [1443] Underfull \hbox (badness 1484) in paragraph at lines 12021--12023 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] Underfull \hbox (badness 10000) in paragraph at lines 12619--12621 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 2894) in paragraph at lines 12955--12959 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] Underfull \hbox (badness 4518) in paragraph at lines 13706--13711 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] Underfull \hbox (badness 4518) in paragraph at lines 14359--14364 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1479] [1480] Underfull \hbox (badness 8151) in paragraph at lines 14497--14501 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14504--14506 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] Underfull \hbox (badness 2503) in paragraph at lines 15577--15581 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4621) in paragraph at lines 16090--16096 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \vbox (badness 10000) has occurred while \output is active [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] Underfull \hbox (badness 1377) in paragraph at lines 18701--18706 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18706--18709 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18719--18723 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18719--18723 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1545] Underfull \hbox (badness 2662) in paragraph at lines 18727--18731 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1546] [1547] Underfull \vbox (badness 10000) has occurred while \output is active [1548] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18952--18952 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18955--18955 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1549] [1550] [1551] [1552] [1553] [1554] [1555] Underfull \hbox (badness 1337) in paragraph at lines 19413--19416 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 3049) in paragraph at lines 19911--19915 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1564] [1565] [1566] [1567] Underfull \hbox (badness 1194) in paragraph at lines 20174--20177 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1568] [1569] [1570] [1571] [1572] [1573] [1574] Underfull \hbox (badness 2503) in paragraph at lines 20553--20556 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20580--20582 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 10000) in paragraph at lines 21658--21664 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1337) in paragraph at lines 23015--23021 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] Underfull \hbox (badness 10000) in paragraph at lines 23578--23579 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 10000) in paragraph at lines 23851--23854 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23851--23854 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1625] [1626] [1627] [1628] [1629] [1630] [1631] [1632] Underfull \hbox (badness 1824) in paragraph at lines 24437--24443 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24437--24443 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1633] Underfull \hbox (badness 10000) in paragraph at lines 24458--24461 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24527--24531 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1634] [1635] [1636] [1637] [1638] [1639] [1640] Underfull \vbox (badness 10000) has occurred while \output is active [1641] [1642] Underfull \hbox (badness 2165) in paragraph at lines 25036--25041 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1643] [1644] [1645] Underfull \hbox (badness 1867) in paragraph at lines 25241--25243 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25256--25260 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \vbox (badness 10000) has occurred while \output is active [1668] Underfull \hbox (badness 3514) in paragraph at lines 26818--26823 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1669] [1670] [1671] [1672] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27052--27052 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1673] Underfull \hbox (badness 3514) in paragraph at lines 27088--27094 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1674] [1675] [1676] Underfull \hbox (badness 3514) in paragraph at lines 27302--27307 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1677] [1678] Underfull \hbox (badness 3514) in paragraph at lines 27389--27394 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1679] Underfull \hbox (badness 3514) in paragraph at lines 27454--27459 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1680] Underfull \hbox (badness 3514) in paragraph at lines 27548--27553 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] [1682] Underfull \hbox (badness 6691) in paragraph at lines 27640--27645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] Underfull \hbox (badness 4024) in paragraph at lines 28170--28173 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] Underfull \hbox (badness 5431) in paragraph at lines 28776--28778 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1700] [1701] [1702] [1703] Underfull \hbox (badness 5431) in paragraph at lines 28986--28989 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1704] [1705] [1706] [1707] [1708] Underfull \hbox (badness 1337) in paragraph at lines 29301--29305 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1709] [1710] [1711] [1712] Underfull \hbox (badness 1616) in paragraph at lines 29613--29616 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1713] [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] Underfull \hbox (badness 3557) in paragraph at lines 30747--30751 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1731] [1732] Underfull \vbox (badness 10000) has occurred while \output is active [1733] [1734] [1735] Underfull \hbox (badness 1337) in paragraph at lines 31111--31115 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 31640--31644 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31654--31656 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1744] [1745] [1746] Overfull \hbox (0.71648pt too wide) in paragraph at lines 31847--31847 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1747] [1748] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32008--32008 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1749] [1750] [1751] [1752] [1753]) (./stats4-pkg.tex [1754] Chapter 11. [1755] [1756] [1757] Underfull \vbox (badness 10000) has occurred while \output is active [1758] [1759] [1760] [1761] [1762]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1763] [1764] [1765]) (./tcltk-pkg.tex [1766] Chapter 12. [1767] [1768] [1769] [1770] [1771] [1772] [1773] Underfull \vbox (badness 10000) has occurred while \output is active [1774] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786]) (./tools-pkg.tex Chapter 13. [1787] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1788] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1789] [1790] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1791] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1792] [1793] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1794] [1795] [1796] [1797] [1798] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1799] [1800] [1801] [1802] [1803] Underfull \hbox (badness 4441) in paragraph at lines 1150--1160 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1804] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1805] [1806] [1807] [1808] [1809] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1810] [1811] Underfull \hbox (badness 7981) in paragraph at lines 1707--1712 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1812] Underfull \hbox (badness 1082) in paragraph at lines 1714--1716 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1813] [1814] [1815]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1911 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1816] [1817] [1818] [1819] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2213--2213 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1820] [1821] [1822] Underfull \hbox (badness 7981) in paragraph at lines 2382--2388 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1823] [1824] [1825] [1826] [1827] [1828] [1829] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2864. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2865. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2865. [1830] [1831] [1832] [1833] Underfull \hbox (badness 1424) in paragraph at lines 3148--3150 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] Underfull \hbox (badness 10000) in paragraph at lines 3849--3851 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 3988--3991 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1847] Underfull \hbox (badness 1137) in paragraph at lines 4090--4092 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1848] [1849] [1850] [1851] [1852] Underfull \hbox (badness 1796) in paragraph at lines 4398--4403 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1853] Underfull \hbox (badness 1838) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4472--4478 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1854] [1855] [1856] [1857] Underfull \hbox (badness 2197) in paragraph at lines 4747--4757 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1858] Underfull \hbox (badness 1571) in paragraph at lines 4810--4814 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1859] [1860] [1861]) (./utils-pkg.tex [1862] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1868] [1869] [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 719--725 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 719--725 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1873] [1874] Underfull \hbox (badness 5847) in paragraph at lines 855--861 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 855--861 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1875] Underfull \hbox (badness 3861) in paragraph at lines 923--928 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1876] [1877] [1878] Underfull \hbox (badness 3323) in paragraph at lines 1094--1102 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1879] [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 1371) in paragraph at lines 1611--1613 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1886] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1681. [1887] [1888] [1889] [1890] [1891] [1892] [1893] [1894] Underfull \hbox (badness 2057) in paragraph at lines 2224--2226 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1895] [1896] [1897] [1898] [1899]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2575 ... the Clipboard in MS Windows}{clipboard} [1900] [1901] Underfull \hbox (badness 1748) in paragraph at lines 2742--2745 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5388) in paragraph at lines 3151--3155 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3156--3159 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 1430) in paragraph at lines 3927--3935 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1919] Underfull \hbox (badness 1231) in paragraph at lines 4004--4016 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1920] [1921] Underfull \hbox (badness 10000) in paragraph at lines 4162--4164 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4860 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4860 ...mat Unordered and Ordered Lists}{format} [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] Underfull \hbox (badness 1622) in paragraph at lines 5379--5383 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6097. Underfull \hbox (badness 1371) in paragraph at lines 6101--6103 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1951] [1952] Underfull \hbox (badness 1502) in paragraph at lines 6190--6195 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6190--6195 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1953] [1954] Underfull \hbox (badness 10000) in paragraph at lines 6363--6372 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1955] Underfull \hbox (badness 2150) in paragraph at lines 6427--6430 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1956] [1957] Underfull \hbox (badness 3118) in paragraph at lines 6565--6567 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1958] [1959] Underfull \hbox (badness 1325) in paragraph at lines 6743--6747 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6755--6761 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1960] Underfull \hbox (badness 10000) in paragraph at lines 6827--6830 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6827--6830 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6835--6838 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1961] Underfull \hbox (badness 3219) in paragraph at lines 6906--6913 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6906--6913 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6906--6913 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6906--6913 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6914--6917 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1962] [1963] Underfull \hbox (badness 1546) in paragraph at lines 7040--7043 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7073--7078 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \hbox (badness 10000) in paragraph at lines 7860--7862 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] Underfull \vbox (badness 10000) has occurred while \output is active [1984] [1985] [1986] [1987] Underfull \hbox (badness 10000) in paragraph at lines 8598--8600 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8620--8625 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 1248) in paragraph at lines 9146--9150 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1995] Underfull \hbox (badness 1789) in paragraph at lines 9224--9226 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] Underfull \vbox (badness 5533) has occurred while \output is active [2005] [2006] [2007] Underfull \hbox (badness 1097) in paragraph at lines 10061--10064 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2008] [2009] Underfull \hbox (badness 3000) in paragraph at lines 10197--10202 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] Underfull \hbox (badness 2134) in paragraph at lines 10779--10784 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2018] Underfull \hbox (badness 10000) in paragraph at lines 10835--10840 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10835--10840 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 2469) in paragraph at lines 11329--11333 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11329--11333 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 4060) in paragraph at lines 11745--11748 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2032] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11768--11768 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2033] [2034] [2035] Underfull \hbox (badness 2150) in paragraph at lines 12007--12009 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2036] [2037] [2038] [2039] Underfull \hbox (badness 10000) in paragraph at lines 12226--12230 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12257--12263 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2040] [2041] Underfull \hbox (badness 1009) in paragraph at lines 12451--12463 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2042] Underfull \hbox (badness 4779) in paragraph at lines 12491--12493 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12521--12528 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2043] [2044] [2045] [2046] [2047] [2048] Underfull \hbox (badness 3780) in paragraph at lines 12924--12928 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12940--12943 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2049] [2050] [2051] Underfull \hbox (badness 2302) in paragraph at lines 13145--13147 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2052] [2053] [2054] [2055] [2056] Underfull \hbox (badness 10000) in paragraph at lines 13443--13448 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13452--13455 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2057] Underfull \vbox (badness 10000) has occurred while \output is active [2058] [2059] [2060] [2061] [2062] Underfull \hbox (badness 2932) in paragraph at lines 13876--13883 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13876--13883 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2063] [2064] [2065] [2066] Underfull \hbox (badness 6510) in paragraph at lines 14185--14189 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14192--14195 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14192--14195 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 10000) in paragraph at lines 14858--14863 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14858--14863 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and [2076] Underfull \hbox (badness 1052) in paragraph at lines 14864--14866 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14923--14926 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 10000) in paragraph at lines 15696--15698 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2089] [2090] [2091]) [2092] [2093] [2094] (./KernSmooth-pkg.tex Chapter 15. [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104]) (./MASS-pkg.tex Chapter 16. [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2142] [2143] [2144] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2145] [2146] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2172] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2203] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2204] [2205] [2206] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2253] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2254] [2255] [2256] [2257] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2258] [2259] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2260] [2261] [2262] [2263] [2264] Underfull \hbox (badness 10000) in paragraph at lines 1022--1024 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2265] [2266]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1189--1195 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2267pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2268] [2269] Underfull \hbox (badness 2277) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2270] [2271] Underfull \hbox (badness 1097) in paragraph at lines 1561--1564 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1567--1571 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2272]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1624 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1624 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1625 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1646 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1657 \aliasA{rowSums}{colSums}{rowSums} [2273] [2274] [2275] Underfull \hbox (badness 3547) in paragraph at lines 1876--1879 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2276] [2277] [2278] [2279] [2280] Underfull \hbox (badness 1360) in paragraph at lines 2299--2303 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2281] [2282] [2283] [2284] Underfull \hbox (badness 2368) in paragraph at lines 2615--2619 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2285] [2286] Underfull \hbox (badness 6842) in paragraph at lines 2705--2708 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2287] Underfull \hbox (badness 10000) in paragraph at lines 2992--2996 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2288] [2289] [2290] Underfull \hbox (badness 1173) in paragraph at lines 3202--3204 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3249--3251 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2291] [2292] Underfull \hbox (badness 1354) in paragraph at lines 3448--3451 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2293] [2294] [2295] [2296] [2297] Underfull \hbox (badness 6188) in paragraph at lines 3858--3861 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3861--3864 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2298] [2299] Underfull \hbox (badness 2318) in paragraph at lines 3975--3979 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2300] [2301] Underfull \hbox (badness 5245) in paragraph at lines 4111--4115 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2302] [2303] [2304] [2305] [2306] [2307] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4533--4533 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4536--4536 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2308] [2309] Underfull \hbox (badness 1931) in paragraph at lines 4768--4770 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2310] [2311] [2312] [2313] [2314] Underfull \hbox (badness 1005) in paragraph at lines 5074--5079 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5074--5079 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5093--5096 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2315] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5140--5140 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2316] Underfull \hbox (badness 3229) in paragraph at lines 5241--5250 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 10000) in paragraph at lines 5283--5285 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use [2317] Underfull \hbox (badness 4995) in paragraph at lines 5288--5291 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5298--5301 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2318] [2319] [2320] [2321] [2322] Underfull \hbox (badness 1014) in paragraph at lines 5675--5678 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2323] [2324] [2325] [2326] Underfull \hbox (badness 10000) in paragraph at lines 5990--5993 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2327] Underfull \hbox (badness 2478) in paragraph at lines 6102--6107 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2328] Underfull \hbox (badness 10000) in paragraph at lines 6110--6113 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2329] Underfull \hbox (badness 10000) in paragraph at lines 6302--6305 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2330] Underfull \hbox (badness 10000) in paragraph at lines 6400--6403 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2331] Underfull \hbox (badness 10000) in paragraph at lines 6475--6478 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2332] Underfull \hbox (badness 2050) in paragraph at lines 6551--6554 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2333] [2334] [2335] Underfull \hbox (badness 6268) in paragraph at lines 6757--6760 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2336] Underfull \hbox (badness 6268) in paragraph at lines 6781--6785 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2337]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6874 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 6967--6969 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 6972--6975 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6977--6980 [2338]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7050 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7158 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7258 ...tcrossprod}{matrix-products}{tcrossprod} [2339pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7362 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7362 ] [2340] Underfull \hbox (badness 10000) in paragraph at lines 7432--7437 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7432--7437 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7441--7443 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7443--7445 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7447--7448 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2341] [2342] Underfull \hbox (badness 1430) in paragraph at lines 7591--7596 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2343] Underfull \hbox (badness 10000) in paragraph at lines 7662--7665 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2344] Underfull \hbox (badness 10000) in paragraph at lines 7714--7716 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2345] [2346] Underfull \vbox (badness 10000) has occurred while \output is active [2347] Underfull \hbox (badness 2478) in paragraph at lines 7918--7923 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7926--7929 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2348] [2349] Underfull \hbox (badness 5924) in paragraph at lines 8120--8122 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2350]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8160 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8160 \HeaderA{norm}{Matrix Norms}{norm} [2351] [2352] Underfull \hbox (badness 10000) in paragraph at lines 8433--8436 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2353] Underfull \hbox (badness 10000) in paragraph at lines 8523--8526 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2354] Underfull \hbox (badness 10000) in paragraph at lines 8599--8602 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2355] Underfull \vbox (badness 10000) has occurred while \output is active [2356] Underfull \hbox (badness 10000) in paragraph at lines 8725--8727 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8730--8733 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2357] [2358] [2359] [2360]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8962 \aliasA{qr}{qr-methods}{qr} [2361] [2362] [2363] [2364]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9258 ... the Reciprocal Condition Number}{rcond} [2365] [2366] [2367] [2368] Underfull \hbox (badness 2351) in paragraph at lines 9562--9570 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9562--9570 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9562--9570 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2369] [2370] [2371] [2372]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9835 \aliasA{solve}{solve-methods}{solve} [2373] Underfull \hbox (badness 10000) in paragraph at lines 9998--10005 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2374] Underfull \hbox (badness 4403) in paragraph at lines 10059--10062 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10129--10132 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2375] Underfull \hbox (badness 10000) in paragraph at lines 10165--10168 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10176--10180 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2376] [2377] [2378] [2379] [2380] [2381] [2382] [2383] Underfull \hbox (badness 10000) in paragraph at lines 10765--10773 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10765--10773 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2384]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.10831 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2385] [2386] Underfull \hbox (badness 5036) in paragraph at lines 11017--11019 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2387] [2388] Underfull \hbox (badness 10000) in paragraph at lines 11224--11227 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2389] Underfull \vbox (badness 10000) has occurred while \output is active [2390] [2391] [2392] Underfull \hbox (badness 10000) in paragraph at lines 11493--11498 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2393] Underfull \hbox (badness 2057) in paragraph at lines 11573--11575 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2394] [2395] Underfull \hbox (badness 1831) in paragraph at lines 11748--11754 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2396] Underfull \hbox (badness 1902) in paragraph at lines 11783--11787 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2397] [2398] [2399] [2400] [2401] [2402] Underfull \hbox (badness 6910) in paragraph at lines 12296--12298 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2403] [2404] [2405]) (./boot-pkg.tex [2406] Chapter 18. [2407] [2408] [2409] [2410] [2411] [2412] [2413] [2414] [2415] [2416] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2417] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2418] Underfull \vbox (badness 10000) has occurred while \output is active [2419] [2420] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2421] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2422] [2423] [2424] [2425] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2426] [2427] [2428] [2429] [2430] [2431] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2432] [2433] Underfull \vbox (badness 10000) has occurred while \output is active [2434] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2435] [2436] [2437] [2438] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2439] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2440] [2441] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2442] [2443] [2444] [2445] [2446] [2447] [2448] [2449] [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] [2461] [2462] [2463] [2464] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2465] [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] [2474] [2475] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2476] [2477] [2478] [2479] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2480] [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2491] [2492] [2493] [2494] [2495] [2496] [2497] [2498] [2499] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2500] [2501] [2502] [2503] [2504] [2505] [2506] [2507] [2508] [2509]) (./class-pkg.tex [2510] Chapter 19. [2511] [2512] [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525] [2526]) (./cluster-pkg.tex Chapter 20. [2527] [2528] [2529] [2530] [2531] Underfull \vbox (badness 7777) has occurred while \output is active [2532] [2533] [2534] [2535] [2536] Underfull \hbox (badness 4144) in paragraph at lines 689--692 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2537] Underfull \hbox (badness 1412) in paragraph at lines 772--777 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2538] [2539] Underfull \hbox (badness 10000) in paragraph at lines 865--867 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2540] [2541] Underfull \hbox (badness 10000) in paragraph at lines 976--978 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 990--994 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2542] [2543] [2544] Underfull \hbox (badness 6110) in paragraph at lines 1191--1195 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2545] [2546] [2547] Underfull \hbox (badness 10000) in paragraph at lines 1460--1463 [2548] [2549] Underfull \hbox (badness 2503) in paragraph at lines 1572--1575 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] Underfull \hbox (badness 10000) in paragraph at lines 2166--2169 Underfull \hbox (badness 10000) in paragraph at lines 2180--2186 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2558] [2559] [2560] [2561] Underfull \hbox (badness 6675) in paragraph at lines 2415--2417 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2562] [2563] [2564] [2565] [2566] [2567] [2568] Underfull \hbox (badness 2980) in paragraph at lines 2906--2910 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2569] [2570] [2571] [2572] [2573] Underfull \hbox (badness 1142) in paragraph at lines 3247--3250 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2574] [2575] Underfull \hbox (badness 1142) in paragraph at lines 3366--3369 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2576] [2577] [2578] [2579] Underfull \hbox (badness 2582) in paragraph at lines 3589--3594 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2580] Underfull \hbox (badness 3209) in paragraph at lines 3651--3656 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3651--3656 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2581] [2582] [2583] [2584] Underfull \hbox (badness 10000) in paragraph at lines 3943--3945 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2585] [2586] [2587] [2588] Underfull \hbox (badness 2626) in paragraph at lines 4167--4172 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2589] Underfull \hbox (badness 1383) in paragraph at lines 4245--4250 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 10000) in paragraph at lines 4688--4690 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2597] [2598]) (./codetools-pkg.tex Chapter 21. [2599] [2600] [2601] [2602] [2603]) (./foreign-pkg.tex [2604] Chapter 22. [2605] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2606] [2607] [2608] [2609] [2610] [2611] [2612] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to [2613] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2614] [2615] [2616] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2617] [2618] [2619] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2620] [2621] [2622] [2623] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2624] [2625]) (./lattice-pkg.tex [2626] Chapter 23. [2627] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2643] Underfull \vbox (badness 4416) has occurred while \output is active [2644] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2645] [2646] [2647] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2648] [2649] [2650] [2651] [2652] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] [2661] [2662] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2663] Underfull \hbox (badness 2486) in paragraph at lines 2970--2974 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2664] [2665] [2666] [2667] [2668] [2669] [2670]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3444 \aliasA{parallel}{B\_08\_splom}{parallel} [2671] [2672] [2673] [2674] [2675] [2676] [2677] Underfull \hbox (badness 5696) in paragraph at lines 3935--3939 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2678] [2679] Underfull \hbox (badness 1173) in paragraph at lines 4074--4078 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4101--4103 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2680] [2681] [2682] Underfull \hbox (badness 3492) in paragraph at lines 4297--4307 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4322--4325 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4325--4327 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2683] [2684] [2685] [2686] [2687] [2688] [2689] [2690] [2691] [2692] Underfull \hbox (badness 6157) in paragraph at lines 5048--5051 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2693] [2694] [2695] [2696] [2697] [2698] Underfull \hbox (badness 10000) in paragraph at lines 5501--5504 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5501--5504 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2699] [2700] [2701] [2702] [2703] Underfull \hbox (badness 4805) in paragraph at lines 5863--5867 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5874--5881 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5874--5881 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2704] [2705] [2706] [2707] Underfull \hbox (badness 4242) in paragraph at lines 6174--6179 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6174--6179 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2708] [2709] Underfull \hbox (badness 2310) in paragraph at lines 6290--6295 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2710] [2711] [2712] [2713] [2714] [2715] [2716] [2717] [2718] [2719] [2720] Underfull \hbox (badness 3168) in paragraph at lines 7072--7076 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2721] [2722] [2723] [2724] Underfull \hbox (badness 2012) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2725] [2726] Underfull \hbox (badness 3333) in paragraph at lines 7515--7517 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2727] [2728] [2729] Underfull \vbox (badness 10000) has occurred while \output is active [2730] [2731] [2732] Underfull \hbox (badness 1436) in paragraph at lines 7929--7935 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2733] [2734] [2735] [2736] [2737] [2738] [2739] [2740] Underfull \hbox (badness 10000) in paragraph at lines 8487--8490 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2741] Underfull \hbox (badness 1092) in paragraph at lines 8533--8535 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2742] [2743] Underfull \hbox (badness 3895) in paragraph at lines 8694--8697 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2744] Underfull \hbox (badness 1515) in paragraph at lines 8770--8774 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2745] [2746] Underfull \hbox (badness 6316) in paragraph at lines 8876--8881 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8893--8896 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2747] [2748] [2749] [2750] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9181--9185 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2751] [2752] [2753] [2754] [2755] [2756] [2757] Underfull \hbox (badness 2310) in paragraph at lines 9639--9643 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9644--9647 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2758] [2759] [2760]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9870 \aliasA{melanoma}{H\_melanoma}{melanoma} [2761] [2762] [2763] Underfull \hbox (badness 4144) in paragraph at lines 10094--10097 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10094--10097 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2764] [2765]) (./mgcv-pkg.tex [2766] Chapter 24. [2767] [2768] [2769] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2770] [2771] [2772] Underfull \vbox (badness 5345) has occurred while \output is active [2773] Underfull \hbox (badness 10000) in paragraph at lines 377--384 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 377--384 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2774] [2775] [2776] [2777] [2778] [2779] Underfull \hbox (badness 1406) in paragraph at lines 702--703 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2780] [2781] Underfull \hbox (badness 1158) in paragraph at lines 812--814 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2782] Underfull \hbox (badness 1259) in paragraph at lines 875--876 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2783] Underfull \vbox (badness 10000) has occurred while \output is active [2784] [2785] [2786] [2787] Underfull \hbox (badness 1281) in paragraph at lines 1159--1160 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2788] [2789] Underfull \vbox (badness 10000) has occurred while \output is active [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] [2799] [2800] [2801] [2802] [2803] [2804] [2805] [2806] [2807] Underfull \hbox (badness 1142) in paragraph at lines 2360--2364 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2808] Underfull \hbox (badness 1043) in paragraph at lines 2386--2391 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2809] [2810] [2811] [2812] [2813] Underfull \vbox (badness 10000) has occurred while \output is active [2814] Underfull \vbox (badness 10000) has occurred while \output is active [2815] Underfull \vbox (badness 10000) has occurred while \output is active [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] Underfull \hbox (badness 10000) in paragraph at lines 3821--3825 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2832] [2833] Underfull \vbox (badness 10000) has occurred while \output is active [2834] Underfull \vbox (badness 10000) has occurred while \output is active [2835] [2836] Underfull \hbox (badness 1184) in paragraph at lines 4107--4111 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] [2848] Underfull \hbox (badness 1142) in paragraph at lines 4828--4832 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2849] Underfull \hbox (badness 1231) in paragraph at lines 4932--4934 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2850] [2851] [2852] Underfull \vbox (badness 10000) has occurred while \output is active [2853] [2854] [2855] [2856] Underfull \hbox (badness 2181) in paragraph at lines 5376--5377 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2857] [2858] [2859] [2860] [2861] [2862] [2863] Underfull \hbox (badness 10000) in paragraph at lines 5765--5766 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2864] [2865] [2866] [2867] [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 1142) in paragraph at lines 6350--6354 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2875] [2876] [2877] Underfull \vbox (badness 10000) has occurred while \output is active [2878] [2879] [2880] [2881] Underfull \hbox (badness 1087) in paragraph at lines 6722--6723 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2882] [2883] Underfull \vbox (badness 10000) has occurred while \output is active [2884] Underfull \vbox (badness 10000) has occurred while \output is active [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897] Underfull \hbox (badness 1242) in paragraph at lines 7668--7669 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2898] [2899] [2900] [2901] [2902] [2903] [2904] [2905] [2906] [2907] [2908] Underfull \hbox (badness 6001) in paragraph at lines 8308--8310 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2909] [2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] Underfull \vbox (badness 10000) has occurred while \output is active [2919] [2920] Underfull \hbox (badness 1038) in paragraph at lines 9057--9060 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9057--9060 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2921] Underfull \hbox (badness 10000) in paragraph at lines 9113--9116 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2922] [2923] [2924] [2925] [2926] [2927] [2928] [2929] [2930] [2931] [2932] Underfull \hbox (badness 1852) in paragraph at lines 9784--9787 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2933] [2934] Underfull \hbox (badness 1852) in paragraph at lines 9950--9953 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2935] [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] Underfull \vbox (badness 10000) has occurred while \output is active [2938] Underfull \hbox (badness 1205) in paragraph at lines 10182--10184 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10182--10184 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10188--10193 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2939] [2940] Underfull \hbox (badness 1205) in paragraph at lines 10272--10274 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10272--10274 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2941] [2942] [2943] Underfull \hbox (badness 1253) in paragraph at lines 10471--10473 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2944] [2945] [2946] [2947] [2948] Underfull \hbox (badness 4792) in paragraph at lines 10732--10735 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10732--10735 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2949] [2950] Underfull \hbox (badness 10000) in paragraph at lines 10839--10842 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] Underfull \vbox (badness 10000) has occurred while \output is active [2962] [2963] Underfull \hbox (badness 3861) in paragraph at lines 11625--11628 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2964] [2965] Underfull \hbox (badness 1320) in paragraph at lines 11740--11745 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2966] [2967] Underfull \hbox (badness 1975) in paragraph at lines 11846--11851 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2968] Underfull \hbox (badness 1762) in paragraph at lines 11935--11947 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2969] [2970] [2971] Underfull \vbox (badness 10000) has occurred while \output is active [2972] Underfull \hbox (badness 7667) in paragraph at lines 12147--12153 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2973] Underfull \hbox (badness 10000) in paragraph at lines 12188--12189 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2974] [2975] [2976] [2977] [2978] Underfull \hbox (badness 10000) in paragraph at lines 12464--12466 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2979] [2980] Underfull \hbox (badness 10000) in paragraph at lines 12594--12595 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2981] [2982] Underfull \hbox (badness 1436) in paragraph at lines 12732--12739 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [2983] [2984] Underfull \hbox (badness 10000) in paragraph at lines 12826--12827 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2985] [2986] [2987] [2988] [2989] [2990] [2991] Underfull \vbox (badness 10000) has occurred while \output is active [2992] [2993] [2994] Underfull \hbox (badness 10000) in paragraph at lines 13414--13420 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13414--13420 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [2995] [2996] [2997] Underfull \vbox (badness 10000) has occurred while \output is active [2998] Underfull \vbox (badness 10000) has occurred while \output is active [2999] [3000] Underfull \hbox (badness 10000) in paragraph at lines 13757--13758 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3001] [3002] [3003] [3004] Underfull \hbox (badness 3895) in paragraph at lines 14018--14021 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3005] Underfull \hbox (badness 10000) in paragraph at lines 14063--14065 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3006] [3007] [3008] [3009] [3010] Underfull \hbox (badness 1371) in paragraph at lines 14337--14343 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14377--14381 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14377--14381 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14377--14381 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3011] [3012] [3013] [3014] Underfull \hbox (badness 2326) in paragraph at lines 14582--14589 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3015] Underfull \hbox (badness 2158) in paragraph at lines 14667--14667 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] Underfull \hbox (badness 1796) in paragraph at lines 16325--16328 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] [3052]) (./nlme-pkg.tex Chapter 25. [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3083] [3084] [3085] [3086] Underfull \hbox (badness 10000) in paragraph at lines 2256--2262 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.3189 ] [3102] [3103] [3104] [3105] [3106] [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] Underfull \hbox (badness 1067) in paragraph at lines 4414--4419 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] Underfull \hbox (badness 10000) in paragraph at lines 5160--5164 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3132] [3133] [3134] [3135] [3136] [3137] [3138] Underfull \hbox (badness 10000) in paragraph at lines 5592--5595 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3139] [3140] [3141] [3142] [3143] [3144] [3145] Underfull \hbox (badness 10000) in paragraph at lines 5973--5978 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3146] [3147] [3148] [3149] Underfull \hbox (badness 1490) in paragraph at lines 6243--6254 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3150] Underfull \hbox (badness 10000) in paragraph at lines 6307--6309 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. 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D e-fault is [3157] [3158] [3159] [3160] Underfull \hbox (badness 10000) in paragraph at lines 6994--7001 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3161] [3162] [3163] [3164] Underfull \hbox (badness 10000) in paragraph at lines 7254--7259 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172] [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] Underfull \hbox (badness 10000) in paragraph at lines 8521--8523 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3184]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8572 \aliasA{sigma}{lmeObject}{sigma} [3185] [3186] [3187] [3188] Underfull \hbox (badness 10000) in paragraph at lines 8802--8809 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] Underfull \hbox (badness 10000) in paragraph at lines 9324--9331 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3197] [3198] [3199] [3200] [3201]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] Underfull \hbox (badness 1596) in paragraph at lines 10459--10485 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3214] [3215] Underfull \hbox (badness 1490) in paragraph at lines 10597--10603 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3216] [3217] [3218] [3219] Underfull \hbox (badness 10000) in paragraph at lines 10838--10840 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] Underfull \hbox (badness 1286) in paragraph at lines 13736--13743 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 1215) in paragraph at lines 14282--14284 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] [3282]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} [3283] [3284] [3285] [3286] [3287] [3288] [3289] [3290] [3291] [3292] [3293] [3294] Underfull \hbox (badness 1067) in paragraph at lines 15931--15936 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3295] [3296] [3297] [3298] Underfull \hbox (badness 1448) in paragraph at lines 16174--16183 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] Underfull \hbox (badness 1728) in paragraph at lines 16879--16882 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3309] [3310] [3311] [3312] [3313] Underfull \hbox (badness 8056) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3314] Underfull \hbox (badness 2913) in paragraph at lines 17278--17286 \T1/ptm/m/n/10 for \T1/zi4/m/it/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 varConstPower \T1/ptm/m/n/10 , [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] Underfull \hbox (badness 10000) in paragraph at lines 18060--18070 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18060--18070 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3326] [3327] [3328] [3329] [3330] Underfull \hbox (badness 5036) in paragraph at lines 18384--18393 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343]) (./nnet-pkg.tex [3344] Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3345] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3346] [3347] [3348] [3349] [3350] [3351] [3352]) (./rpart-pkg.tex Chapter 27. [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381]) (./spatial-pkg.tex [3382] Chapter 28. [3383] [3384] [3385] [3386] [3387] [3388] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401]) (./survival-pkg.tex [3402] Chapter 29. [3403] [3404] [3405] [3406]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} [3407] [3408] [3409] [3410] [3411] Underfull \vbox (badness 10000) has occurred while \output is active [3412] [3413] [3414] [3415] [3416] [3417] Underfull \hbox (badness 1097) in paragraph at lines 975--977 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3418] [3419] [3420]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1177 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3421] Underfull \hbox (badness 10000) in paragraph at lines 1224--1228 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1798--1813 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3430] [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] [3442] [3443] [3444] [3445] Underfull \vbox (badness 10000) has occurred while \output is active [3446] [3447] [3448] Underfull \hbox (badness 1389) in paragraph at lines 3149--3151 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3449] [3450] [3451] [3452] Overfull \hbox (467.89665pt too wide) in alignment at lines 3428--3428 [] [] [3453] Underfull \vbox (badness 10000) has occurred while \output is active [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] Underfull \hbox (badness 5274) in paragraph at lines 4935--4937 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3476] [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] Underfull \vbox (badness 10000) has occurred while \output is active [3487] [3488] [3489] Underfull \hbox (badness 1281) in paragraph at lines 5962--5965 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3490] [3491] [3492] [3493] [3494] [3495] [3496] [3497]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.6470 ...ata from a soldering experiment}{solder} [3498] Underfull \vbox (badness 10000) has occurred while \output is active [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515] [3516] [3517] Underfull \hbox (badness 10000) in paragraph at lines 7862--7871 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3518] [3519] Underfull \hbox (badness 1038) in paragraph at lines 8018--8024 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3520] [3521] [3522] [3523] [3524] Underfull \hbox (badness 10000) in paragraph at lines 8381--8386 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535] Underfull \hbox (badness 1354) in paragraph at lines 9263--9267 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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lines 5131--5133 []\T1/zi4/m/it/10 %&%,nsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5135--5137 []\T1/zi4/m/it/10 %&%,sparseMatrix,diagonalMatrix-method [3605] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5318--5320 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3606] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5479--5481 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5481--5483 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5485--5487 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5487--5489 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3607] Overfull \hbox (10.8567pt too wide) in paragraph at lines 5747--5749 []\T1/zi4/m/it/10 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[3612] [3613] [3614] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7183--7185 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7185--7187 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method [3615] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7215--7217 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7217--7219 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7223--7225 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3616] [3617] [3618] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7953--7955 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7955--7957 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method [3619] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7965--7967 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7969--7971 []\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7973--7975 []\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7975--7977 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7977--7979 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7979--7981 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7983--7985 []\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7985--7987 []\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method Overfull \hbox (25.8567pt too wide) 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coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8093--8095 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8141--8143 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3621] [3622] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8293--8295 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8295--8297 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8327--8329 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8341--8343 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8343--8345 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at 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wide) in paragraph at lines 8585--8587 []\T1/zi4/m/it/10 coerce,ndenseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8587--8589 []\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method [3625] Overfull \hbox (10.8567pt too wide) in paragraph at lines 8591--8593 []\T1/zi4/m/it/10 coerce,ndenseMatrix,nsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8593--8595 []\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8595--8597 []\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8635--8637 []\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8659--8661 []\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8661--8663 []\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method [3626] Overfull \hbox (15.8567pt too wide) in paragraph at lines 8693--8695 []\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8695--8697 []\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8697--8699 []\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8699--8701 []\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8701--8703 []\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method [3627] Overfull \hbox (15.8567pt too wide) in paragraph at lines 8819--8821 []\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8821--8823 []\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8827--8829 []\T1/zi4/m/it/10 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too wide) in paragraph at lines 9623--9625 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9625--9627 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,ddenseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9627--9629 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,dgCMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9629--9631 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,dsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9631--9633 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,ldenseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9637--9639 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,ndenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 9643--9645 []\T1/zi4/m/it/10 crossprod,dgeMatrix,dsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9651--9653 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 9653--9655 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,dgeMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9655--9657 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method [3632] Overfull \hbox (15.8567pt too wide) in paragraph at lines 9657--9659 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,lgeMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9659--9661 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9661--9663 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9663--9665 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,sparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9665--9667 []\T1/zi4/m/it/10 crossprod,dsparseMatrix,ddenseMatrix-method Overfull \hbox (10.8567pt too wide) in 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crossprod,nsparseMatrix,missing-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9755--9757 []\T1/zi4/m/it/10 crossprod,nsparseMatrix,ndenseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9757--9759 []\T1/zi4/m/it/10 crossprod,nsparseMatrix,nsparseMatrix-method [3633] Overfull \hbox (0.8567pt too wide) in paragraph at lines 9761--9763 []\T1/zi4/m/it/10 crossprod,numLike,CsparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9777--9779 []\T1/zi4/m/it/10 crossprod,sparseMatrix,diagonalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9785--9787 []\T1/zi4/m/it/10 crossprod,sparseVector,sparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9789--9791 []\T1/zi4/m/it/10 crossprod,symmetricMatrix,Matrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 9791--9793 []\T1/zi4/m/it/10 crossprod,symmetricMatrix,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9797--9799 []\T1/zi4/m/it/10 crossprod,TsparseMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9799--9801 []\T1/zi4/m/it/10 crossprod,TsparseMatrix,TsparseMatrix-method Overfull \hbox (15.01662pt too wide) in paragraph at lines 9833--9835 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9894--9896 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9899--9901 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3634] [3635] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10241--10243 []\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 10243--10245 []\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method Overfull \hbox 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kronecker,TsparseMatrix,sparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 14395--14397 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method [3656] [3657] [3658] Overfull \hbox (10.8567pt too wide) in paragraph at lines 15191--15193 []\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 15199--15201 []\T1/zi4/m/it/10 Logic,ldenseMatrix,lsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 15223--15225 []\T1/zi4/m/it/10 Logic,lsparseMatrix,ldenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15225--15227 []\T1/zi4/m/it/10 Logic,lsparseMatrix,lsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15227--15229 []\T1/zi4/m/it/10 Logic,lsparseVector,lsparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15249--15251 []\T1/zi4/m/it/10 Logic,nsparseVector,nsparseVector-method Overfull \hbox (0.8567pt 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)\T1/ptm/m/n/10 , [3675] [3676] [3677] [3678] [3679] Overfull \hbox (0.8567pt too wide) in paragraph at lines 19764--19766 []\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method [3680] Overfull \hbox (20.8567pt too wide) in paragraph at lines 19931--19933 []\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [3681] Overfull \hbox (0.8567pt too wide) in paragraph at lines 20157--20159 []\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 20159--20161 []\T1/zi4/m/it/10 rbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 20191--20193 []\T1/zi4/m/it/10 rbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 20193--20195 []\T1/zi4/m/it/10 rbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 20199--20201 []\T1/zi4/m/it/10 rbind2,sparseMatrix,sparseMatrix-method [3682] [3683] [3684] [3685] [3686] [3687] [3688] [3689] [3690] Overfull \hbox (15.01662pt too wide) in paragraph at lines 21913--21915 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21915--21917 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21918--21920 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21933--21935 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21938--21940 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21946--21948 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3691] Overfull \hbox (10.8567pt too wide) in paragraph at lines 22165--22167 []\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method [3692] Overfull \hbox (10.8567pt too wide) in paragraph at lines 22167--22169 []\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method Overfull \hbox (20.01662pt too wide) in paragraph at lines 22328--22330 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3693] [3694] Overfull \hbox (5.8567pt too wide) in paragraph at lines 22769--22771 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 22771--22773 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 22773--22775 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [3695] [3696] [3697] [3698] [3699] Overfull \hbox (35.8567pt too wide) in paragraph at 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[3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]["long.double"] \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 316--319 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . 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By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3821--3823 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4062--4062 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5098--5100 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6273--6273 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [93] [94] [95] [96] [97] [98] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6737--6739 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 6902--6905 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. 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Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7473--7479 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [109] [110] [111] [112] [113] Underfull \hbox (badness 2096) in paragraph at lines 7815--7819 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [114] [115] Underfull \hbox (badness 2351) in paragraph at lines 7933--7936 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [116] [117] [118] [119] [120] Underfull \hbox (badness 4479) in paragraph at lines 8262--8273 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [121] [122] [123] [124] [125] [126] Underfull \hbox (badness 1629) in paragraph at lines 8711--8723 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8711--8723 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8711--8723 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1178) in paragraph at lines 9467--9471 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] Underfull \hbox (badness 1735) in paragraph at lines 10636--10640 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [154] [155] [156] [157] [158] [159] [160] Underfull \hbox (badness 6396) in paragraph at lines 11086--11094 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11086--11094 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 4569) in paragraph at lines 12204--12208 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12204--12208 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 2253) in paragraph at lines 13879--13881 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [199] Underfull \hbox (badness 1565) in paragraph at lines 13952--13956 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [200] Underfull \hbox (badness 4927) in paragraph at lines 13996--13998 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [201] Underfull \hbox (badness 3148) in paragraph at lines 14094--14099 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [202] Underfull \hbox (badness 1466) in paragraph at lines 14141--14144 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [203] Underfull \hbox (badness 10000) in paragraph at lines 14268--14272 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14279--14282 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [204] [205] [206] [207] [208] Underfull \hbox (badness 3965) in paragraph at lines 14573--14577 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Underfull \hbox (badness 4429) in paragraph at lines 15351--15354 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [220] Underfull \hbox (badness 10000) in paragraph at lines 15457--15459 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15457--15459 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see [221] Underfull \hbox (badness 10000) in paragraph at lines 15479--15484 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15479--15484 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15491--15495 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15491--15495 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want Underfull \hbox (badness 2035) in paragraph at lines 15530--15534 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [222] [223] [224] [225] [226] [227] [228] [229] [230] Underfull \hbox (badness 2452) in paragraph at lines 16130--16134 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16130--16134 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [231] [232] [233] Underfull \hbox (badness 1092) in paragraph at lines 16303--16308 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [234] [235] [236] Underfull \hbox (badness 6741) in paragraph at lines 16553--16557 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [237] [238] [239] [240] [241] [242] [243] [244] [245] Underfull \vbox (badness 10000) has occurred while \output is active [246] [247] [248] [249] [250] [251] [252] [253] [254] Underfull \hbox (badness 1478) in paragraph at lines 17863--17866 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [255] [256] [257] [258] Underfull \hbox (badness 10000) in paragraph at lines 18123--18125 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [259] [260] [261] [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1442) in paragraph at lines 18723--18725 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [268] [269] [270] [271] [272] [273] [274] Underfull \hbox (badness 1248) in paragraph at lines 19289--19292 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [275] [276] [277] [278] [279] Underfull \hbox (badness 4739) in paragraph at lines 19552--19554 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [280] [281] [282] [283] [284] [285] Underfull \hbox (badness 1596) in paragraph at lines 19971--19976 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [286] [287] [288] [289] [290] [291] [292] [293] [294] Underfull \hbox (badness 2469) in paragraph at lines 20576--20581 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [295] Underfull \hbox (badness 10000) in paragraph at lines 20590--20597 [][][]$\T1/zi4/m/n/10 https : / / curl . haxx . se / docs / sslcerts . html$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20664--20668 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20664--20668 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [296] [297] [298] Underfull \hbox (badness 1014) in paragraph at lines 20834--20839 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] Underfull \hbox (badness 1264) in paragraph at lines 21681--21686 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: Underfull \hbox (badness 4441) in paragraph at lines 21710--21713 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] Underfull \hbox (badness 6047) in paragraph at lines 22457--22459 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] Underfull \hbox (badness 2790) in paragraph at lines 24028--24031 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24028--24031 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [346] [347] [348] [349] Underfull \hbox (badness 1194) in paragraph at lines 24314--24317 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [350] [351] Underfull \hbox (badness 2368) in paragraph at lines 24521--24527 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24521--24527 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 10000) in paragraph at lines 24903--24906 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [358] [359] [360] [361] [362] [363] [364] [365] [366] Underfull \hbox (badness 10000) in paragraph at lines 25520--25522 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 1038) in paragraph at lines 26365--26373 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26365--26373 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26365--26373 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26374--26377 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26398--26400 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [379] [380] Underfull \hbox (badness 2142) in paragraph at lines 26539--26543 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26596--26601 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [381] [382] [383] Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26888--26894 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26901--26904 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [384] Underfull \hbox (badness 2689) in paragraph at lines 26927--26929 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 26962--26967 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 26968--26979 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 26968--26979 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 26980--26983 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [385] [386] [387] [388] [389] [390] [391] [392] Underfull \hbox (badness 10000) in paragraph at lines 27527--27530 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [393] Underfull \hbox (badness 7925) in paragraph at lines 27607--27611 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27607--27611 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27612--27621 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 2726) in paragraph at lines 28473--28476 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] Underfull \vbox (badness 10000) has occurred while \output is active [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 1533) in paragraph at lines 30206--30209 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [431] [432] [433] Underfull \hbox (badness 1163) in paragraph at lines 30369--30380 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] Underfull \hbox (badness 10000) in paragraph at lines 31953--31957 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 31953--31957 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [456] Underfull \hbox (badness 3557) in paragraph at lines 31975--31977 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1701) in paragraph at lines 31978--31982 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tp : / / www . pcre . org / [457] [458] [459] [460] [461] [462] [463] [464] Underfull \hbox (badness 1655) in paragraph at lines 32533--32535 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] Underfull \hbox (badness 2261) in paragraph at lines 33721--33726 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [482] Underfull \hbox (badness 10000) in paragraph at lines 33748--33754 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33748--33754 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] Underfull \vbox (badness 10000) has occurred while \output is active [520] [521] [522] [523] [524] [525] [526] [527] Underfull \hbox (badness 1072) in paragraph at lines 36936--36940 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 36941--36945 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 36971--36977 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 36971--36977 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 36971--36977 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 36983--36990 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 36983--36990 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [528] [529] [530] [531] Underfull \hbox (badness 2644) in paragraph at lines 37215--37219 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [532] [533] Underfull \hbox (badness 1142) in paragraph at lines 37367--37373 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 1565) in paragraph at lines 38644--38646 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [552] [553] [554] [555] [556] [557] [558] [559] [560] Underfull \hbox (badness 1137) in paragraph at lines 39234--39240 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39253--39258 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [561] [562] Underfull \hbox (badness 1616) in paragraph at lines 39366--39371 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [563] [564] [565] [566] [567] [568] [569] [570] Underfull \hbox (badness 1472) in paragraph at lines 39893--39896 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] Underfull \hbox (badness 10000) in paragraph at lines 40812--40816 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [584] [585] [586] [587] Underfull \hbox (badness 10000) in paragraph at lines 41063--41066 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [588] [589] [590] Underfull \hbox (badness 10000) in paragraph at lines 41247--41251 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [591] [592] [593] [594] [595] [596] [597] [598] Underfull \hbox (badness 10000) in paragraph at lines 41868--41871 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] Underfull \hbox (badness 1990) in paragraph at lines 42790--42798 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 42790--42798 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [612] [613] [614] [615] [616] [617] [618] [619] Underfull \hbox (badness 1917) in paragraph at lines 43295--43302 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [620] [621] [622] [623] [624] [625] Underfull \hbox (badness 2452) in paragraph at lines 43747--43753 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [626] [627] [628] [629] [630] [631] Underfull \hbox (badness 3668) in paragraph at lines 44120--44122 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [632] Underfull \hbox (badness 2401) in paragraph at lines 44250--44254 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [633] [634] [635] Underfull \hbox (badness 2111) in paragraph at lines 44439--44444 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 44460--44465 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [636] [637] [638] [639] [640] [641] [642] [643] [644] Underfull \hbox (badness 5417) in paragraph at lines 45048--45052 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [645] Underfull \hbox (badness 10000) in paragraph at lines 45109--45113 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [646]) (./compiler-pkg.tex Chapter 2. [647] [648] [649] [650]) (./datasets-pkg.tex Chapter 3. [651] [652] [653] [654] [655] [656] Underfull \vbox (badness 1472) has occurred while \output is active [657] [658] [659] [660] [661] [662] [663] [664] [665] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] Overfull \vbox (4.26088pt too high) has occurred while \output is active [688] [689] [690] [691] [692] [693] Overfull \vbox (13.87083pt too high) has occurred while \output is active [694] Underfull \vbox (badness 2376) has occurred while \output is active [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] Overfull \vbox (10.49593pt too high) has occurred while \output is active [711] Overfull \vbox (15.49593pt too high) has occurred while \output is active [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726]) (./grDevices-pkg.tex Chapter 4. [727] [728] [729] [730] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [731] [732] [733] [734] [735] [736] [737] [738] [739] Underfull \hbox (badness 1424) in paragraph at lines 892--894 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [740] [741] [742] [743] [744] Underfull \hbox (badness 5175) in paragraph at lines 1186--1188 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [745] [746] Underfull \hbox (badness 2512) in paragraph at lines 1305--1307 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [747] Underfull \hbox (badness 1852) in paragraph at lines 1399--1402 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [748] [749] [750] Underfull \hbox (badness 1490) in paragraph at lines 1605--1610 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [751] [752] [753] [754] [755] [756] Underfull \hbox (badness 1325) in paragraph at lines 2011--2021 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [757] Underfull \hbox (badness 10000) in paragraph at lines 2123--2125 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [758] [759] [760] Underfull \hbox (badness 6758) in paragraph at lines 2302--2305 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [761] [762] [763] [764] [765] [766] [767] [768] [769] Underfull \hbox (badness 10000) in paragraph at lines 2910--2911 Underfull \vbox (badness 10000) has occurred while \output is active [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 10000) in paragraph at lines 3484--3489 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [778] [779] [780] [781] [782] [783] [784] Underfull \vbox (badness 10000) has occurred while \output is active [785] Underfull \hbox (badness 10000) in paragraph at lines 3983--3986 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 10000) in paragraph at lines 4719--4724 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 4181) in paragraph at lines 4719--4724 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in [796] Underfull \vbox (badness 10000) has occurred while \output is active [797] [798] Underfull \hbox (badness 1584) in paragraph at lines 4875--4877 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4879--4886 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [799] [800] [801] [802] Underfull \hbox (badness 1377) in paragraph at lines 5185--5190 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [803] Underfull \hbox (badness 1418) in paragraph at lines 5261--5268 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5279--5281 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [804] Underfull \hbox (badness 1377) in paragraph at lines 5390--5395 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [805] Underfull \hbox (badness 7344) in paragraph at lines 5459--5461 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [806] [807] Underfull \hbox (badness 2035) in paragraph at lines 5596--5605 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5596--5605 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5596--5605 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [808] Underfull \hbox (badness 10000) in paragraph at lines 5664--5671 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5664--5671 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . Underfull \vbox (badness 10000) has occurred while \output is active [809] [810] [811] Underfull \hbox (badness 1546) in paragraph at lines 5806--5814 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [812] [813] [814] [815] [816] [817] [818] [819] Underfull \hbox (badness 10000) in paragraph at lines 6344--6347 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [820] [821] [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] Underfull \hbox (badness 1189) in paragraph at lines 7169--7171 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [832] Underfull \hbox (badness 10000) in paragraph at lines 7273--7275 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [833] [834] [835] [836] Underfull \hbox (badness 3780) in paragraph at lines 7580--7586 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [837] [838] [839] Underfull \hbox (badness 2680) in paragraph at lines 7782--7784 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [840] [841] [842]) (./graphics-pkg.tex Chapter 5. [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] Underfull \vbox (badness 10000) has occurred while \output is active [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] Underfull \hbox (badness 1728) in paragraph at lines 2328--2330 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [879] Underfull \hbox (badness 1009) in paragraph at lines 2421--2428 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] Underfull \hbox (badness 3229) in paragraph at lines 4596--4601 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [913] [914] [915] [916] Underfull \hbox (badness 10000) in paragraph at lines 5026--5032 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5026--5032 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [917] [918] Underfull \hbox (badness 10000) in paragraph at lines 5157--5160 [919 ] Underfull \hbox (badness 10000) in paragraph at lines 5218--5220 [920 ] [921] Underfull \hbox (badness 10000) in paragraph at lines 5408--5410 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [922] [923] [924] [925] [926] [927] [928] [929]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5890 \aliasA{plot}{plot.default}{plot} [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6795--6796 [][] [943 ] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] Underfull \hbox (badness 2012) in paragraph at lines 7620--7623 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 10000) in paragraph at lines 8886--8888 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8888--8890 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [975]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8968 \HeaderA{units}{Graphical Units}{units} [976] [977] [978] [979]) (./grid-pkg.tex [980] Chapter 6. [981] [982] [983] [984] [985] [986] [987] [988] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [989] [990] [991] [992] [993] [994] [995] [996] [997] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] Underfull \vbox (badness 10000) has occurred while \output is active [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] Underfull \hbox (badness 1067) in paragraph at lines 4487--4490 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1051] [1052] [1053] [1054] Underfull \hbox (badness 7256) in paragraph at lines 4732--4734 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] Underfull \hbox (badness 1824) in paragraph at lines 6604--6607 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1084] [1085] [1086] [1087]) (./methods-pkg.tex [1088] Chapter 7. [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] Underfull \vbox (badness 10000) has occurred while \output is active [1097] Underfull \vbox (badness 10000) has occurred while \output is active [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1115] [1116] [1117] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1118] [1119] [1120] [1121] [1122] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1123] [1124] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1132] [1133] [1134] [1135] [1136] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1137] [1138] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \vbox (badness 10000) has occurred while \output is active [1157] Underfull \vbox (badness 10000) has occurred while \output is active [1158] [1159] [1160] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1161] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1162] [1163] [1164] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1173] [1174] [1175] [1176] Underfull \vbox (badness 10000) has occurred while \output is active [1177] [1178] [1179]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1180] [1181] [1182]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1183] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1184] [1185] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1219] [1220] [1221] [1222] [1223] [1224] [1225] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1226] [1227] [1228]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \hbox (badness 3386) in paragraph at lines 1393--1396 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1249] [1250] [1251]) (./splines-pkg.tex [1252] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266]) (./stats-pkg.tex Chapter 10. [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1280] [1281] [1282] [1283] [1284] [1285] [1286] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1287] [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] Underfull \hbox (badness 2503) in paragraph at lines 3486--3489 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] Underfull \hbox (badness 1127) in paragraph at lines 4402--4405 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1332] [1333] [1334] [1335] [1336] Underfull \hbox (badness 3989) in paragraph at lines 4741--4748 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2556) in paragraph at lines 5377--5380 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5394--5396 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1346] [1347] [1348] [1349] [1350] [1351] Underfull \hbox (badness 2503) in paragraph at lines 5791--5795 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] Underfull \hbox (badness 7081) in paragraph at lines 6585--6588 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6589--6591 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 10000) in paragraph at lines 7435--7438 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] Underfull \vbox (badness 10000) has occurred while \output is active [1398] [1399] [1400] [1401] Underfull \hbox (badness 2626) in paragraph at lines 9114--9117 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1402] [1403] Underfull \hbox (badness 2503) in paragraph at lines 9221--9225 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 4518) in paragraph at lines 10557--10562 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1423] [1424] [1425] [1426] [1427] Underfull \hbox (badness 2142) in paragraph at lines 10918--10921 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10937--10940 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1428] Underfull \hbox (badness 1708) in paragraph at lines 10999--11003 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 1694) in paragraph at lines 11395--11398 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11879 \aliasA{hat}{influence.measures}{hat} [1442] [1443] Underfull \hbox (badness 1484) in paragraph at lines 12021--12023 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] Underfull \hbox (badness 10000) in paragraph at lines 12619--12621 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 2894) in paragraph at lines 12955--12959 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] Underfull \hbox (badness 4518) in paragraph at lines 13706--13711 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] Underfull \hbox (badness 4518) in paragraph at lines 14359--14364 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1479] [1480] Underfull \hbox (badness 8151) in paragraph at lines 14497--14501 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14504--14506 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] Underfull \hbox (badness 2503) in paragraph at lines 15577--15581 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4621) in paragraph at lines 16090--16096 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \vbox (badness 10000) has occurred while \output is active [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] Underfull \hbox (badness 1377) in paragraph at lines 18701--18706 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18706--18709 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18719--18723 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18719--18723 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1545] Underfull \hbox (badness 2662) in paragraph at lines 18727--18731 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1546] [1547] Underfull \vbox (badness 10000) has occurred while \output is active [1548] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18952--18952 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18955--18955 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1549] [1550] [1551] [1552] [1553] [1554] [1555] Underfull \hbox (badness 1337) in paragraph at lines 19413--19416 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 3049) in paragraph at lines 19911--19915 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1564] [1565] [1566] [1567] Underfull \hbox (badness 1194) in paragraph at lines 20174--20177 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1568] [1569] [1570] [1571] [1572] [1573] [1574] Underfull \hbox (badness 2503) in paragraph at lines 20553--20556 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20580--20582 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 10000) in paragraph at lines 21658--21664 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1337) in paragraph at lines 23015--23021 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] Underfull \hbox (badness 10000) in paragraph at lines 23578--23579 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 10000) in paragraph at lines 23851--23854 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23851--23854 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1625] [1626] [1627] [1628] [1629] [1630] [1631] [1632] Underfull \hbox (badness 1824) in paragraph at lines 24437--24443 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24437--24443 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1633] Underfull \hbox (badness 10000) in paragraph at lines 24458--24461 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24527--24531 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1634] [1635] [1636] [1637] [1638] [1639] [1640] Underfull \vbox (badness 10000) has occurred while \output is active [1641] [1642] Underfull \hbox (badness 2165) in paragraph at lines 25036--25041 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1643] [1644] [1645] Underfull \hbox (badness 1867) in paragraph at lines 25241--25243 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25256--25260 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \vbox (badness 10000) has occurred while \output is active [1668] Underfull \hbox (badness 3514) in paragraph at lines 26818--26823 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1669] [1670] [1671] [1672] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27052--27052 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1673] Underfull \hbox (badness 3514) in paragraph at lines 27088--27094 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1674] [1675] [1676] Underfull \hbox (badness 3514) in paragraph at lines 27302--27307 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1677] [1678] Underfull \hbox (badness 3514) in paragraph at lines 27389--27394 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1679] Underfull \hbox (badness 3514) in paragraph at lines 27454--27459 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1680] Underfull \hbox (badness 3514) in paragraph at lines 27548--27553 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] [1682] Underfull \hbox (badness 6691) in paragraph at lines 27640--27645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] Underfull \hbox (badness 4024) in paragraph at lines 28170--28173 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] Underfull \hbox (badness 5431) in paragraph at lines 28776--28778 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1700] [1701] [1702] [1703] Underfull \hbox (badness 5431) in paragraph at lines 28986--28989 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1704] [1705] [1706] [1707] [1708] Underfull \hbox (badness 1337) in paragraph at lines 29301--29305 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1709] [1710] [1711] [1712] Underfull \hbox (badness 1616) in paragraph at lines 29613--29616 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1713] [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] Underfull \hbox (badness 3557) in paragraph at lines 30747--30751 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1731] [1732] Underfull \vbox (badness 10000) has occurred while \output is active [1733] [1734] [1735] Underfull \hbox (badness 1337) in paragraph at lines 31111--31115 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 31640--31644 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31654--31656 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1744] [1745] [1746] Overfull \hbox (0.71648pt too wide) in paragraph at lines 31847--31847 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1747] [1748] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32008--32008 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1749] [1750] [1751] [1752] [1753]) (./stats4-pkg.tex [1754] Chapter 11. [1755] [1756] [1757] Underfull \vbox (badness 10000) has occurred while \output is active [1758] [1759] [1760] [1761] [1762]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1763] [1764] [1765]) (./tcltk-pkg.tex [1766] Chapter 12. [1767] [1768] [1769] [1770] [1771] [1772] [1773] Underfull \vbox (badness 10000) has occurred while \output is active [1774] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786]) (./tools-pkg.tex Chapter 13. [1787] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1788] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1789] [1790] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1791] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1792] [1793] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1794] [1795] [1796] [1797] [1798] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1799] [1800] [1801] [1802] [1803] Underfull \hbox (badness 4441) in paragraph at lines 1150--1160 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1804] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1805] [1806] [1807] [1808] [1809] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1810] [1811] Underfull \hbox (badness 7981) in paragraph at lines 1707--1712 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1812] Underfull \hbox (badness 1082) in paragraph at lines 1714--1716 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1813] [1814] [1815]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1911 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1816] [1817] [1818] [1819] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2213--2213 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1820] [1821] [1822] Underfull \hbox (badness 7981) in paragraph at lines 2382--2388 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1823] [1824] [1825] [1826] [1827] [1828] [1829] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2864. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2865. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2865. [1830] [1831] [1832] [1833] Underfull \hbox (badness 1424) in paragraph at lines 3148--3150 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] Underfull \hbox (badness 10000) in paragraph at lines 3849--3851 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 3988--3991 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1847] Underfull \hbox (badness 1137) in paragraph at lines 4090--4092 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1848] [1849] [1850] [1851] [1852] Underfull \hbox (badness 1796) in paragraph at lines 4398--4403 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1853] Underfull \hbox (badness 1838) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4472--4478 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1854] [1855] [1856] [1857] Underfull \hbox (badness 2197) in paragraph at lines 4747--4757 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1858] Underfull \hbox (badness 1571) in paragraph at lines 4810--4814 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1859] [1860] [1861]) (./utils-pkg.tex [1862] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1868] [1869] [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 719--725 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 719--725 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1873] [1874] Underfull \hbox (badness 5847) in paragraph at lines 855--861 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 855--861 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1875] Underfull \hbox (badness 3861) in paragraph at lines 923--928 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1876] [1877] [1878] Underfull \hbox (badness 3323) in paragraph at lines 1094--1102 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1879] [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 1371) in paragraph at lines 1611--1613 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1886] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1681. [1887] [1888] [1889] [1890] [1891] [1892] [1893] [1894] Underfull \hbox (badness 2057) in paragraph at lines 2224--2226 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1895] [1896] [1897] [1898] [1899]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2575 ... the Clipboard in MS Windows}{clipboard} [1900] [1901] Underfull \hbox (badness 1748) in paragraph at lines 2742--2745 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5388) in paragraph at lines 3151--3155 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3156--3159 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 1430) in paragraph at lines 3927--3935 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1919] Underfull \hbox (badness 1231) in paragraph at lines 4004--4016 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1920] [1921] Underfull \hbox (badness 10000) in paragraph at lines 4162--4164 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4860 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4860 ...mat Unordered and Ordered Lists}{format} [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] Underfull \hbox (badness 1622) in paragraph at lines 5379--5383 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6097. Underfull \hbox (badness 1371) in paragraph at lines 6101--6103 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1951] [1952] Underfull \hbox (badness 1502) in paragraph at lines 6190--6195 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6190--6195 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1953] [1954] Underfull \hbox (badness 10000) in paragraph at lines 6363--6372 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1955] Underfull \hbox (badness 2150) in paragraph at lines 6427--6430 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1956] [1957] Underfull \hbox (badness 3118) in paragraph at lines 6565--6567 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1958] [1959] Underfull \hbox (badness 1325) in paragraph at lines 6743--6747 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6755--6761 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1960] Underfull \hbox (badness 10000) in paragraph at lines 6827--6830 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6827--6830 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6835--6838 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1961] Underfull \hbox (badness 3219) in paragraph at lines 6906--6913 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6906--6913 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6906--6913 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6906--6913 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6914--6917 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1962] [1963] Underfull \hbox (badness 1546) in paragraph at lines 7040--7043 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7073--7078 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \hbox (badness 10000) in paragraph at lines 7860--7862 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] Underfull \vbox (badness 10000) has occurred while \output is active [1984] [1985] [1986] [1987] Underfull \hbox (badness 10000) in paragraph at lines 8598--8600 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8620--8625 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 1248) in paragraph at lines 9146--9150 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1995] Underfull \hbox (badness 1789) in paragraph at lines 9224--9226 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] Underfull \vbox (badness 5533) has occurred while \output is active [2005] [2006] [2007] Underfull \hbox (badness 1097) in paragraph at lines 10061--10064 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2008] [2009] Underfull \hbox (badness 3000) in paragraph at lines 10197--10202 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] Underfull \hbox (badness 2134) in paragraph at lines 10779--10784 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2018] Underfull \hbox (badness 10000) in paragraph at lines 10835--10840 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10835--10840 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 2469) in paragraph at lines 11329--11333 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11329--11333 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 4060) in paragraph at lines 11745--11748 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2032] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11768--11768 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2033] [2034] [2035] Underfull \hbox (badness 2150) in paragraph at lines 12007--12009 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2036] [2037] [2038] [2039] Underfull \hbox (badness 10000) in paragraph at lines 12226--12230 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12257--12263 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2040] [2041] Underfull \hbox (badness 1009) in paragraph at lines 12451--12463 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2042] Underfull \hbox (badness 4779) in paragraph at lines 12491--12493 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12521--12528 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2043] [2044] [2045] [2046] [2047] [2048] Underfull \hbox (badness 3780) in paragraph at lines 12924--12928 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12940--12943 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2049] [2050] [2051] Underfull \hbox (badness 2302) in paragraph at lines 13145--13147 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2052] [2053] [2054] [2055] [2056] Underfull \hbox (badness 10000) in paragraph at lines 13443--13448 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13452--13455 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2057] Underfull \vbox (badness 10000) has occurred while \output is active [2058] [2059] [2060] [2061] [2062] Underfull \hbox (badness 2932) in paragraph at lines 13876--13883 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13876--13883 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2063] [2064] [2065] [2066] Underfull \hbox (badness 6510) in paragraph at lines 14185--14189 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14192--14195 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14192--14195 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 10000) in paragraph at lines 14858--14863 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14858--14863 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and [2076] Underfull \hbox (badness 1052) in paragraph at lines 14864--14866 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14923--14926 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 10000) in paragraph at lines 15696--15698 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2089] [2090] [2091]) [2092] [2093] [2094] (./KernSmooth-pkg.tex Chapter 15. [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104]) (./MASS-pkg.tex Chapter 16. [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2142] [2143] [2144] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2145] [2146] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2172] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2203] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2204] [2205] [2206] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2253] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2254] [2255] [2256] [2257] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2258] [2259] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2260] [2261] [2262] [2263] [2264] Underfull \hbox (badness 10000) in paragraph at lines 1022--1024 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2265] [2266]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1189--1195 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2267pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2268] [2269] Underfull \hbox (badness 2277) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2270] [2271] Underfull \hbox (badness 1097) in paragraph at lines 1561--1564 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1567--1571 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2272]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1624 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1624 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1625 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1646 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1657 \aliasA{rowSums}{colSums}{rowSums} [2273] [2274] [2275] Underfull \hbox (badness 3547) in paragraph at lines 1876--1879 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2276] [2277] [2278] [2279] [2280] Underfull \hbox (badness 1360) in paragraph at lines 2299--2303 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2281] [2282] [2283] [2284] Underfull \hbox (badness 2368) in paragraph at lines 2615--2619 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2285] [2286] Underfull \hbox (badness 6842) in paragraph at lines 2705--2708 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2287] Underfull \hbox (badness 10000) in paragraph at lines 2992--2996 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2288] [2289] [2290] Underfull \hbox (badness 1173) in paragraph at lines 3202--3204 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3249--3251 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2291] [2292] Underfull \hbox (badness 1354) in paragraph at lines 3448--3451 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2293] [2294] [2295] [2296] [2297] Underfull \hbox (badness 6188) in paragraph at lines 3858--3861 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3861--3864 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2298] [2299] Underfull \hbox (badness 2318) in paragraph at lines 3975--3979 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2300] [2301] Underfull \hbox (badness 5245) in paragraph at lines 4111--4115 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2302] [2303] [2304] [2305] [2306] [2307] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4533--4533 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4536--4536 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2308] [2309] Underfull \hbox (badness 1931) in paragraph at lines 4768--4770 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2310] [2311] [2312] [2313] [2314] Underfull \hbox (badness 1005) in paragraph at lines 5074--5079 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5074--5079 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5093--5096 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2315] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5140--5140 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2316] Underfull \hbox (badness 3229) in paragraph at lines 5241--5250 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 10000) in paragraph at lines 5283--5285 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use [2317] Underfull \hbox (badness 4995) in paragraph at lines 5288--5291 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5298--5301 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2318] [2319] [2320] [2321] [2322] Underfull \hbox (badness 1014) in paragraph at lines 5675--5678 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2323] [2324] [2325] [2326] Underfull \hbox (badness 10000) in paragraph at lines 5990--5993 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2327] Underfull \hbox (badness 2478) in paragraph at lines 6102--6107 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2328] Underfull \hbox (badness 10000) in paragraph at lines 6110--6113 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2329] Underfull \hbox (badness 10000) in paragraph at lines 6302--6305 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2330] Underfull \hbox (badness 10000) in paragraph at lines 6400--6403 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2331] Underfull \hbox (badness 10000) in paragraph at lines 6475--6478 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2332] Underfull \hbox (badness 2050) in paragraph at lines 6551--6554 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2333] [2334] [2335] Underfull \hbox (badness 6268) in paragraph at lines 6757--6760 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2336] Underfull \hbox (badness 6268) in paragraph at lines 6781--6785 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2337]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6874 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 6967--6969 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 6972--6975 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6977--6980 [2338]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7050 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7158 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7258 ...tcrossprod}{matrix-products}{tcrossprod} [2339pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7362 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7362 ] [2340] Underfull \hbox (badness 10000) in paragraph at lines 7432--7437 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7432--7437 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7441--7443 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7443--7445 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7447--7448 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2341] [2342] Underfull \hbox (badness 1430) in paragraph at lines 7591--7596 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2343] Underfull \hbox (badness 10000) in paragraph at lines 7662--7665 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2344] Underfull \hbox (badness 10000) in paragraph at lines 7714--7716 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2345] [2346] Underfull \vbox (badness 10000) has occurred while \output is active [2347] Underfull \hbox (badness 2478) in paragraph at lines 7918--7923 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7926--7929 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2348] [2349] Underfull \hbox (badness 5924) in paragraph at lines 8120--8122 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2350]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8160 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8160 \HeaderA{norm}{Matrix Norms}{norm} [2351] [2352] Underfull \hbox (badness 10000) in paragraph at lines 8433--8436 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2353] Underfull \hbox (badness 10000) in paragraph at lines 8523--8526 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2354] Underfull \hbox (badness 10000) in paragraph at lines 8599--8602 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2355] Underfull \vbox (badness 10000) has occurred while \output is active [2356] Underfull \hbox (badness 10000) in paragraph at lines 8725--8727 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8730--8733 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2357] [2358] [2359] [2360]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8962 \aliasA{qr}{qr-methods}{qr} [2361] [2362] [2363] [2364]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9258 ... the Reciprocal Condition Number}{rcond} [2365] [2366] [2367] [2368] Underfull \hbox (badness 2351) in paragraph at lines 9562--9570 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9562--9570 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9562--9570 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2369] [2370] [2371] [2372]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9835 \aliasA{solve}{solve-methods}{solve} [2373] Underfull \hbox (badness 10000) in paragraph at lines 9998--10005 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2374] Underfull \hbox (badness 4403) in paragraph at lines 10059--10062 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10129--10132 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2375] Underfull \hbox (badness 10000) in paragraph at lines 10165--10168 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10176--10180 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2376] [2377] [2378] [2379] [2380] [2381] [2382] [2383] Underfull \hbox (badness 10000) in paragraph at lines 10765--10773 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10765--10773 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2384]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.10831 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2385] [2386] Underfull \hbox (badness 5036) in paragraph at lines 11017--11019 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2387] [2388] Underfull \hbox (badness 10000) in paragraph at lines 11224--11227 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2389] Underfull \vbox (badness 10000) has occurred while \output is active [2390] [2391] [2392] Underfull \hbox (badness 10000) in paragraph at lines 11493--11498 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2393] Underfull \hbox (badness 2057) in paragraph at lines 11573--11575 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2394] [2395] Underfull \hbox (badness 1831) in paragraph at lines 11748--11754 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2396] Underfull \hbox (badness 1902) in paragraph at lines 11783--11787 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2397] [2398] [2399] [2400] [2401] [2402] Underfull \hbox (badness 6910) in paragraph at lines 12296--12298 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2403] [2404] [2405]) (./boot-pkg.tex [2406] Chapter 18. [2407] [2408] [2409] [2410] [2411] [2412] [2413] [2414] [2415] [2416] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2417] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2418] Underfull \vbox (badness 10000) has occurred while \output is active [2419] [2420] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2421] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2422] [2423] [2424] [2425] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2426] [2427] [2428] [2429] [2430] [2431] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2432] [2433] Underfull \vbox (badness 10000) has occurred while \output is active [2434] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2435] [2436] [2437] [2438] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2439] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2440] [2441] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2442] [2443] [2444] [2445] [2446] [2447] [2448] [2449] [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] [2461] [2462] [2463] [2464] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2465] [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] [2474] [2475] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2476] [2477] [2478] [2479] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2480] [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2491] [2492] [2493] [2494] [2495] [2496] [2497] [2498] [2499] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2500] [2501] [2502] [2503] [2504] [2505] [2506] [2507] [2508] [2509]) (./class-pkg.tex [2510] Chapter 19. [2511] [2512] [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525] [2526]) (./cluster-pkg.tex Chapter 20. [2527] [2528] [2529] [2530] [2531] Underfull \vbox (badness 7777) has occurred while \output is active [2532] [2533] [2534] [2535] [2536] Underfull \hbox (badness 4144) in paragraph at lines 689--692 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2537] Underfull \hbox (badness 1412) in paragraph at lines 772--777 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2538] [2539] Underfull \hbox (badness 10000) in paragraph at lines 865--867 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2540] [2541] Underfull \hbox (badness 10000) in paragraph at lines 976--978 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 990--994 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2542] [2543] [2544] Underfull \hbox (badness 6110) in paragraph at lines 1191--1195 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2545] [2546] [2547] Underfull \hbox (badness 10000) in paragraph at lines 1460--1463 [2548] [2549] Underfull \hbox (badness 2503) in paragraph at lines 1572--1575 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] Underfull \hbox (badness 10000) in paragraph at lines 2166--2169 Underfull \hbox (badness 10000) in paragraph at lines 2180--2186 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2558] [2559] [2560] [2561] Underfull \hbox (badness 6675) in paragraph at lines 2415--2417 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2562] [2563] [2564] [2565] [2566] [2567] [2568] Underfull \hbox (badness 2980) in paragraph at lines 2906--2910 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2569] [2570] [2571] [2572] [2573] Underfull \hbox (badness 1142) in paragraph at lines 3247--3250 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2574] [2575] Underfull \hbox (badness 1142) in paragraph at lines 3366--3369 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2576] [2577] [2578] [2579] Underfull \hbox (badness 2582) in paragraph at lines 3589--3594 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2580] Underfull \hbox (badness 3209) in paragraph at lines 3651--3656 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3651--3656 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2581] [2582] [2583] [2584] Underfull \hbox (badness 10000) in paragraph at lines 3943--3945 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2585] [2586] [2587] [2588] Underfull \hbox (badness 2626) in paragraph at lines 4167--4172 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2589] Underfull \hbox (badness 1383) in paragraph at lines 4245--4250 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 10000) in paragraph at lines 4688--4690 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2597] [2598]) (./codetools-pkg.tex Chapter 21. [2599] [2600] [2601] [2602] [2603]) (./foreign-pkg.tex [2604] Chapter 22. [2605] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2606] [2607] [2608] [2609] [2610] [2611] [2612] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to [2613] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2614] [2615] [2616] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2617] [2618] [2619] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2620] [2621] [2622] [2623] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2624] [2625]) (./lattice-pkg.tex [2626] Chapter 23. [2627] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2643] Underfull \vbox (badness 4416) has occurred while \output is active [2644] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2645] [2646] [2647] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2648] [2649] [2650] [2651] [2652] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] [2661] [2662] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2663] Underfull \hbox (badness 2486) in paragraph at lines 2970--2974 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2664] [2665] [2666] [2667] [2668] [2669] [2670]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3444 \aliasA{parallel}{B\_08\_splom}{parallel} [2671] [2672] [2673] [2674] [2675] [2676] [2677] Underfull \hbox (badness 5696) in paragraph at lines 3935--3939 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2678] [2679] Underfull \hbox (badness 1173) in paragraph at lines 4074--4078 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4101--4103 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2680] [2681] [2682] Underfull \hbox (badness 3492) in paragraph at lines 4297--4307 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4322--4325 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4325--4327 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2683] [2684] [2685] [2686] [2687] [2688] [2689] [2690] [2691] [2692] Underfull \hbox (badness 6157) in paragraph at lines 5048--5051 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2693] [2694] [2695] [2696] [2697] [2698] Underfull \hbox (badness 10000) in paragraph at lines 5501--5504 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5501--5504 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2699] [2700] [2701] [2702] [2703] Underfull \hbox (badness 4805) in paragraph at lines 5863--5867 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5874--5881 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5874--5881 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2704] [2705] [2706] [2707] Underfull \hbox (badness 4242) in paragraph at lines 6174--6179 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6174--6179 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2708] [2709] Underfull \hbox (badness 2310) in paragraph at lines 6290--6295 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2710] [2711] [2712] [2713] [2714] [2715] [2716] [2717] [2718] [2719] [2720] Underfull \hbox (badness 3168) in paragraph at lines 7072--7076 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2721] [2722] [2723] [2724] Underfull \hbox (badness 2012) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2725] [2726] Underfull \hbox (badness 3333) in paragraph at lines 7515--7517 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2727] [2728] [2729] Underfull \vbox (badness 10000) has occurred while \output is active [2730] [2731] [2732] Underfull \hbox (badness 1436) in paragraph at lines 7929--7935 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2733] [2734] [2735] [2736] [2737] [2738] [2739] [2740] Underfull \hbox (badness 10000) in paragraph at lines 8487--8490 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2741] Underfull \hbox (badness 1092) in paragraph at lines 8533--8535 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2742] [2743] Underfull \hbox (badness 3895) in paragraph at lines 8694--8697 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2744] Underfull \hbox (badness 1515) in paragraph at lines 8770--8774 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2745] [2746] Underfull \hbox (badness 6316) in paragraph at lines 8876--8881 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8893--8896 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2747] [2748] [2749] [2750] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9181--9185 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2751] [2752] [2753] [2754] [2755] [2756] [2757] Underfull \hbox (badness 2310) in paragraph at lines 9639--9643 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9644--9647 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2758] [2759] [2760]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9870 \aliasA{melanoma}{H\_melanoma}{melanoma} [2761] [2762] [2763] Underfull \hbox (badness 4144) in paragraph at lines 10094--10097 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10094--10097 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2764] [2765]) (./mgcv-pkg.tex [2766] Chapter 24. [2767] [2768] [2769] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2770] [2771] [2772] Underfull \vbox (badness 5345) has occurred while \output is active [2773] Underfull \hbox (badness 10000) in paragraph at lines 377--384 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 377--384 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2774] [2775] [2776] [2777] [2778] [2779] Underfull \hbox (badness 1406) in paragraph at lines 702--703 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2780] [2781] Underfull \hbox (badness 1158) in paragraph at lines 812--814 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2782] Underfull \hbox (badness 1259) in paragraph at lines 875--876 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2783] Underfull \vbox (badness 10000) has occurred while \output is active [2784] [2785] [2786] [2787] Underfull \hbox (badness 1281) in paragraph at lines 1159--1160 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2788] [2789] Underfull \vbox (badness 10000) has occurred while \output is active [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] [2799] [2800] [2801] [2802] [2803] [2804] [2805] [2806] [2807] Underfull \hbox (badness 1142) in paragraph at lines 2360--2364 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2808] Underfull \hbox (badness 1043) in paragraph at lines 2386--2391 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2809] [2810] [2811] [2812] [2813] Underfull \vbox (badness 10000) has occurred while \output is active [2814] Underfull \vbox (badness 10000) has occurred while \output is active [2815] Underfull \vbox (badness 10000) has occurred while \output is active [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] Underfull \hbox (badness 10000) in paragraph at lines 3821--3825 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2832] [2833] Underfull \vbox (badness 10000) has occurred while \output is active [2834] Underfull \vbox (badness 10000) has occurred while \output is active [2835] [2836] Underfull \hbox (badness 1184) in paragraph at lines 4107--4111 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] [2848] Underfull \hbox (badness 1142) in paragraph at lines 4828--4832 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2849] Underfull \hbox (badness 1231) in paragraph at lines 4932--4934 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2850] [2851] [2852] Underfull \vbox (badness 10000) has occurred while \output is active [2853] [2854] [2855] [2856] Underfull \hbox (badness 2181) in paragraph at lines 5376--5377 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2857] [2858] [2859] [2860] [2861] [2862] [2863] Underfull \hbox (badness 10000) in paragraph at lines 5765--5766 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2864] [2865] [2866] [2867] [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 1142) in paragraph at lines 6350--6354 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2875] [2876] [2877] Underfull \vbox (badness 10000) has occurred while \output is active [2878] [2879] [2880] [2881] Underfull \hbox (badness 1087) in paragraph at lines 6722--6723 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2882] [2883] Underfull \vbox (badness 10000) has occurred while \output is active [2884] Underfull \vbox (badness 10000) has occurred while \output is active [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897] Underfull \hbox (badness 1242) in paragraph at lines 7668--7669 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2898] [2899] [2900] [2901] [2902] [2903] [2904] [2905] [2906] [2907] [2908] Underfull \hbox (badness 6001) in paragraph at lines 8308--8310 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2909] [2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] Underfull \vbox (badness 10000) has occurred while \output is active [2919] [2920] Underfull \hbox (badness 1038) in paragraph at lines 9057--9060 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9057--9060 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2921] Underfull \hbox (badness 10000) in paragraph at lines 9113--9116 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2922] [2923] [2924] [2925] [2926] [2927] [2928] [2929] [2930] [2931] [2932] Underfull \hbox (badness 1852) in paragraph at lines 9784--9787 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2933] [2934] Underfull \hbox (badness 1852) in paragraph at lines 9950--9953 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2935] [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] Underfull \vbox (badness 10000) has occurred while \output is active [2938] Underfull \hbox (badness 1205) in paragraph at lines 10182--10184 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10182--10184 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10188--10193 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2939] [2940] Underfull \hbox (badness 1205) in paragraph at lines 10272--10274 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10272--10274 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2941] [2942] [2943] Underfull \hbox (badness 1253) in paragraph at lines 10471--10473 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2944] [2945] [2946] [2947] [2948] Underfull \hbox (badness 4792) in paragraph at lines 10732--10735 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10732--10735 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2949] [2950] Underfull \hbox (badness 10000) in paragraph at lines 10839--10842 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] Underfull \vbox (badness 10000) has occurred while \output is active [2962] [2963] Underfull \hbox (badness 3861) in paragraph at lines 11625--11628 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2964] [2965] Underfull \hbox (badness 1320) in paragraph at lines 11740--11745 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2966] [2967] Underfull \hbox (badness 1975) in paragraph at lines 11846--11851 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2968] Underfull \hbox (badness 1762) in paragraph at lines 11935--11947 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2969] [2970] [2971] Underfull \vbox (badness 10000) has occurred while \output is active [2972] Underfull \hbox (badness 7667) in paragraph at lines 12147--12153 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2973] Underfull \hbox (badness 10000) in paragraph at lines 12188--12189 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2974] [2975] [2976] [2977] [2978] Underfull \hbox (badness 10000) in paragraph at lines 12464--12466 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2979] [2980] Underfull \hbox (badness 10000) in paragraph at lines 12594--12595 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2981] [2982] Underfull \hbox (badness 1436) in paragraph at lines 12732--12739 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [2983] [2984] Underfull \hbox (badness 10000) in paragraph at lines 12826--12827 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2985] [2986] [2987] [2988] [2989] [2990] [2991] Underfull \vbox (badness 10000) has occurred while \output is active [2992] [2993] [2994] Underfull \hbox (badness 10000) in paragraph at lines 13414--13420 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13414--13420 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [2995] [2996] [2997] Underfull \vbox (badness 10000) has occurred while \output is active [2998] Underfull \vbox (badness 10000) has occurred while \output is active [2999] [3000] Underfull \hbox (badness 10000) in paragraph at lines 13757--13758 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3001] [3002] [3003] [3004] Underfull \hbox (badness 3895) in paragraph at lines 14018--14021 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3005] Underfull \hbox (badness 10000) in paragraph at lines 14063--14065 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3006] [3007] [3008] [3009] [3010] Underfull \hbox (badness 1371) in paragraph at lines 14337--14343 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14377--14381 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14377--14381 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14377--14381 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3011] [3012] [3013] [3014] Underfull \hbox (badness 2326) in paragraph at lines 14582--14589 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3015] Underfull \hbox (badness 2158) in paragraph at lines 14667--14667 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] Underfull \hbox (badness 1796) in paragraph at lines 16325--16328 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] [3052]) (./nlme-pkg.tex Chapter 25. [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3083] [3084] [3085] [3086] Underfull \hbox (badness 10000) in paragraph at lines 2256--2262 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.3189 ] [3102] [3103] [3104] [3105] [3106] [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] Underfull \hbox (badness 1067) in paragraph at lines 4414--4419 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] Underfull \hbox (badness 10000) in paragraph at lines 5160--5164 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3132] [3133] [3134] [3135] [3136] [3137] [3138] Underfull \hbox (badness 10000) in paragraph at lines 5592--5595 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3139] [3140] [3141] [3142] [3143] [3144] [3145] Underfull \hbox (badness 10000) in paragraph at lines 5973--5978 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3146] [3147] [3148] [3149] Underfull \hbox (badness 1490) in paragraph at lines 6243--6254 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3150] Underfull \hbox (badness 10000) in paragraph at lines 6307--6309 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. 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D e-fault is [3157] [3158] [3159] [3160] Underfull \hbox (badness 10000) in paragraph at lines 6994--7001 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3161] [3162] [3163] [3164] Underfull \hbox (badness 10000) in paragraph at lines 7254--7259 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172] [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] Underfull \hbox (badness 10000) in paragraph at lines 8521--8523 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3184]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8572 \aliasA{sigma}{lmeObject}{sigma} [3185] [3186] [3187] [3188] Underfull \hbox (badness 10000) in paragraph at lines 8802--8809 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] Underfull \hbox (badness 10000) in paragraph at lines 9324--9331 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3197] [3198] [3199] [3200] [3201]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] Underfull \hbox (badness 1596) in paragraph at lines 10459--10485 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3214] [3215] Underfull \hbox (badness 1490) in paragraph at lines 10597--10603 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3216] [3217] [3218] [3219] Underfull \hbox (badness 10000) in paragraph at lines 10838--10840 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] Underfull \hbox (badness 1286) in paragraph at lines 13736--13743 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 1215) in paragraph at lines 14282--14284 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] [3282]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} [3283] [3284] [3285] [3286] [3287] [3288] [3289] [3290] [3291] [3292] [3293] [3294] Underfull \hbox (badness 1067) in paragraph at lines 15931--15936 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3295] [3296] [3297] [3298] Underfull \hbox (badness 1448) in paragraph at lines 16174--16183 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] Underfull \hbox (badness 1728) in paragraph at lines 16879--16882 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3309] [3310] [3311] [3312] [3313] Underfull \hbox (badness 8056) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17214--17223 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3314] Underfull \hbox (badness 2913) in paragraph at lines 17278--17286 \T1/ptm/m/n/10 for \T1/zi4/m/it/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 varConstPower \T1/ptm/m/n/10 , [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] Underfull \hbox (badness 10000) in paragraph at lines 18060--18070 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18060--18070 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3326] [3327] [3328] [3329] [3330] Underfull \hbox (badness 5036) in paragraph at lines 18384--18393 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343]) (./nnet-pkg.tex [3344] Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3345] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3346] [3347] [3348] [3349] [3350] [3351] [3352]) (./rpart-pkg.tex Chapter 27. [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381]) (./spatial-pkg.tex [3382] Chapter 28. [3383] [3384] [3385] [3386] [3387] [3388] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401]) (./survival-pkg.tex [3402] Chapter 29. [3403] [3404] [3405] [3406]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} [3407] [3408] [3409] [3410] [3411] Underfull \vbox (badness 10000) has occurred while \output is active [3412] [3413] [3414] [3415] [3416] [3417] Underfull \hbox (badness 1097) in paragraph at lines 975--977 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3418] [3419] [3420]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1177 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3421] Underfull \hbox (badness 10000) in paragraph at lines 1224--1228 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1798--1813 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1798--1813 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3430] [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] [3442] [3443] [3444] [3445] Underfull \vbox (badness 10000) has occurred while \output is active [3446] [3447] [3448] Underfull \hbox (badness 1389) in paragraph at lines 3149--3151 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3449] [3450] [3451] [3452] Overfull \hbox (467.89665pt too wide) in alignment at lines 3428--3428 [] [] [3453] Underfull \vbox (badness 10000) has occurred while \output is active [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] Underfull \hbox (badness 5274) in paragraph at lines 4935--4937 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3476] [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] Underfull \vbox (badness 10000) has occurred while \output is active [3487] [3488] [3489] Underfull \hbox (badness 1281) in paragraph at lines 5962--5965 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3490] [3491] [3492] [3493] [3494] [3495] [3496] [3497]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.6470 ...ata from a soldering experiment}{solder} [3498] Underfull \vbox (badness 10000) has occurred while \output is active [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515] [3516] [3517] Underfull \hbox (badness 10000) in paragraph at lines 7862--7871 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3518] [3519] Underfull \hbox (badness 1038) in paragraph at lines 8018--8024 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3520] [3521] [3522] [3523] [3524] Underfull \hbox (badness 10000) in paragraph at lines 8381--8386 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535] Underfull \hbox (badness 1354) in paragraph at lines 9263--9267 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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lines 5131--5133 []\T1/zi4/m/it/10 %&%,nsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5135--5137 []\T1/zi4/m/it/10 %&%,sparseMatrix,diagonalMatrix-method [3605] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5318--5320 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3606] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5479--5481 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5481--5483 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5485--5487 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5487--5489 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3607] Overfull \hbox (10.8567pt too wide) in paragraph at lines 5747--5749 []\T1/zi4/m/it/10 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[3612] [3613] [3614] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7183--7185 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7185--7187 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method [3615] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7215--7217 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7217--7219 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7223--7225 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3616] [3617] [3618] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7953--7955 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7955--7957 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method [3619] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7965--7967 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7969--7971 []\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7973--7975 []\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7975--7977 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7977--7979 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7979--7981 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7983--7985 []\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7985--7987 []\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method Overfull \hbox (25.8567pt too wide) 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coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8093--8095 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8141--8143 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3621] [3622] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8293--8295 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8295--8297 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8327--8329 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8341--8343 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8343--8345 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at 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wide) in paragraph at lines 8585--8587 []\T1/zi4/m/it/10 coerce,ndenseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8587--8589 []\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method [3625] Overfull \hbox (10.8567pt too wide) in paragraph at lines 8591--8593 []\T1/zi4/m/it/10 coerce,ndenseMatrix,nsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8593--8595 []\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8595--8597 []\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8635--8637 []\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8659--8661 []\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8661--8663 []\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method [3626] Overfull \hbox (15.8567pt too wide) in paragraph at lines 8693--8695 []\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8695--8697 []\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8697--8699 []\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8699--8701 []\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8701--8703 []\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method [3627] Overfull \hbox (15.8567pt too wide) in paragraph at lines 8819--8821 []\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8821--8823 []\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8827--8829 []\T1/zi4/m/it/10 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too wide) in paragraph at lines 9623--9625 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9625--9627 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,ddenseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9627--9629 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,dgCMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9629--9631 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,dsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9631--9633 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,ldenseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9637--9639 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,ndenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 9643--9645 []\T1/zi4/m/it/10 crossprod,dgeMatrix,dsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9651--9653 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 9653--9655 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,dgeMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9655--9657 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method [3632] Overfull \hbox (15.8567pt too wide) in paragraph at lines 9657--9659 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,lgeMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9659--9661 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9661--9663 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9663--9665 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,sparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9665--9667 []\T1/zi4/m/it/10 crossprod,dsparseMatrix,ddenseMatrix-method Overfull \hbox (10.8567pt too wide) in 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crossprod,nsparseMatrix,missing-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9755--9757 []\T1/zi4/m/it/10 crossprod,nsparseMatrix,ndenseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9757--9759 []\T1/zi4/m/it/10 crossprod,nsparseMatrix,nsparseMatrix-method [3633] Overfull \hbox (0.8567pt too wide) in paragraph at lines 9761--9763 []\T1/zi4/m/it/10 crossprod,numLike,CsparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9777--9779 []\T1/zi4/m/it/10 crossprod,sparseMatrix,diagonalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9785--9787 []\T1/zi4/m/it/10 crossprod,sparseVector,sparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9789--9791 []\T1/zi4/m/it/10 crossprod,symmetricMatrix,Matrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 9791--9793 []\T1/zi4/m/it/10 crossprod,symmetricMatrix,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9797--9799 []\T1/zi4/m/it/10 crossprod,TsparseMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9799--9801 []\T1/zi4/m/it/10 crossprod,TsparseMatrix,TsparseMatrix-method Overfull \hbox (15.01662pt too wide) in paragraph at lines 9833--9835 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9894--9896 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9899--9901 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3634] [3635] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10241--10243 []\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 10243--10245 []\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method Overfull \hbox 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kronecker,TsparseMatrix,sparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 14395--14397 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method [3656] [3657] [3658] Overfull \hbox (10.8567pt too wide) in paragraph at lines 15191--15193 []\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 15199--15201 []\T1/zi4/m/it/10 Logic,ldenseMatrix,lsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 15223--15225 []\T1/zi4/m/it/10 Logic,lsparseMatrix,ldenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15225--15227 []\T1/zi4/m/it/10 Logic,lsparseMatrix,lsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15227--15229 []\T1/zi4/m/it/10 Logic,lsparseVector,lsparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 15249--15251 []\T1/zi4/m/it/10 Logic,nsparseVector,nsparseVector-method Overfull \hbox (0.8567pt 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)\T1/ptm/m/n/10 , [3675] [3676] [3677] [3678] [3679] Overfull \hbox (0.8567pt too wide) in paragraph at lines 19764--19766 []\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method [3680] Overfull \hbox (20.8567pt too wide) in paragraph at lines 19931--19933 []\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [3681] Overfull \hbox (0.8567pt too wide) in paragraph at lines 20157--20159 []\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 20159--20161 []\T1/zi4/m/it/10 rbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 20191--20193 []\T1/zi4/m/it/10 rbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 20193--20195 []\T1/zi4/m/it/10 rbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 20199--20201 []\T1/zi4/m/it/10 rbind2,sparseMatrix,sparseMatrix-method [3682] [3683] [3684] [3685] [3686] [3687] [3688] [3689] [3690] Overfull \hbox (15.01662pt too wide) in paragraph at lines 21913--21915 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21915--21917 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21918--21920 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21933--21935 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21938--21940 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 21946--21948 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3691] Overfull \hbox (10.8567pt too wide) in paragraph at lines 22165--22167 []\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method [3692] Overfull \hbox (10.8567pt too wide) in paragraph at lines 22167--22169 []\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method Overfull \hbox (20.01662pt too wide) in paragraph at lines 22328--22330 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3693] [3694] Overfull \hbox (5.8567pt too wide) in paragraph at lines 22769--22771 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 22771--22773 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 22773--22775 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [3695] [3696] [3697] [3698] [3699] Overfull \hbox (35.8567pt too wide) in paragraph at 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dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dist/font s/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb> Output written on fullrefman.pdf (3762 pages, 10421864 bytes). Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te xmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3282--3290 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (48 pages, 355924 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te xmf-dist/fonts/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3282--3290 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 372040 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te xmf-dist/fonts/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3282--3290 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 372040 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Underfull \hbox (badness 10000) in paragraph at lines 1481--1485 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [16] [17] [18] Chapter 5 [19] Chapter 6 [20] [21] [22] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2050--2050 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [23] [24] [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] Chapter 9 [33] [34] Appendix A [35] [36] [37] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3155--3155 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [38] [39] [40] [41] [42] [43] [44] [45] [46] Appendix B [47] [48] [49] [50] [51] [52] Appendix C [53] [54] [55] [56] [57] [58] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4901--4901 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 4903--4903 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 4955--4955 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [59] Overfull \hbox (45.05586pt too wide) in paragraph at lines 4992--4992 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5028--5029 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ [60] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5093--5093 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] [61] [62] Overfull \hbox (16.31242pt too wide) in paragraph at lines 5289--5289 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Cont ents/Home[] [63] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5392--5392 []@texttt /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortr an.5.dylib \[] [64] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5409--5409 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have [65] [66] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5606--5606 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [67] [68] (Function and variable index) [69] No file R-admin.vrs. (Concept index) [70] No file R-admin.cps. (Environment variable index) [71] No file R-admin.ens. [72] ) (see the transcript file for additional information) Output written on R-admin.pdf (75 pages, 458054 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Underfull \hbox (badness 10000) in paragraph at lines 1481--1485 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [16] [17] [18] Chapter 5 [19] Chapter 6 [20] [21] [22] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2050--2050 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [23] [24] [25] [26] [27] Chapter 7 [28] [29] [30] Chapter 8 [31] Chapter 9 [32] [33] Appendix A [34] [35] [36] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3155--3155 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [37] [38] [39] [40] [41] [42] [43] [44] [45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54] [55] [56] [57] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4901--4901 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 4903--4903 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 4955--4955 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [58] Overfull \hbox (45.05586pt too wide) in paragraph at lines 4992--4992 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5028--5029 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ [59] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5093--5093 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] [60] [61] Overfull \hbox (16.31242pt too wide) in paragraph at lines 5289--5289 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Cont ents/Home[] [62] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5392--5392 []@texttt /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortr an.5.dylib \[] [63] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5409--5409 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have [64] [65] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5606--5606 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [66] [67] (Function and variable index) [68] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.vrs) (Concept index) [69] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.cps) (Environment variable index) [70] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.ens) [71] ) (see the transcript file for additional information)pdfTeX warning (dest): name {72} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (76 pages, 501263 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Underfull \hbox (badness 10000) in paragraph at lines 1481--1485 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [16] [17] [18] Chapter 5 [19] Chapter 6 [20] [21] [22] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2050--2050 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [23] [24] [25] [26] [27] Chapter 7 [28] [29] [30] Chapter 8 [31] Chapter 9 [32] [33] Appendix A [34] [35] [36] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3155--3155 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [37] [38] [39] [40] [41] [42] [43] [44] [45] Appendix B [46] [47] [48] [49] [50] [51] Appendix C [52] [53] [54] [55] [56] [57] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4901--4901 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 4903--4903 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 4955--4955 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [58] Overfull \hbox (45.05586pt too wide) in paragraph at lines 4992--4992 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5028--5029 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ [59] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5093--5093 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] [60] [61] Overfull \hbox (16.31242pt too wide) in paragraph at lines 5289--5289 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Cont ents/Home[] [62] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5392--5392 []@texttt /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortr an.5.dylib \[] [63] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5409--5409 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have [64] [65] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5606--5606 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [66] [67] (Function and variable index) [68] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.vrs) (Concept index) [69] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.cps) (Environment variable index) [70] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-admin.ens) [71] ) (see the transcript file for additional information) Output written on R-admin.pdf (76 pages, 501260 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] No file R-data.vrs. (Concept index) [29] No file R-data.cps. [30] )< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb> Output written on R-data.pdf (33 pages, 266253 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.cps) [31] ) Output written on R-data.pdf (35 pages, 305975 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-data.cps) [31] ) Output written on R-data.pdf (35 pages, 305982 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2431--2431 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2433--2433 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2746--2746 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4419--4419 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4438--4438 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4812--4812 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4814--4814 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4815--4815 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4830--4830 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] Underfull \hbox (badness 7558) in paragraph at lines 4884--4888 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [55] [56] [57] [58] [59] [60] [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5487--5487 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6026--6036 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7068--7075 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7247--7253 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8541--8550 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8806--8816 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 8820--8821 [][][]@smallrm see [][]@smalltt http:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8958--8958 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 8986--8988 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9132--9132 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9503--9503 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9522--9522 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9533--9533 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [111] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9563--9563 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10406--10406 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] [128] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10983--10983 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11825--11827 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12865--12865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12965--12965 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13688--13693 @texttt fortran-compiler-developer-guide-and-reference/ top/ compiler-referen ce/ [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 14900--14906 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15311--15311 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15369--15369 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15872--15879 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 15995--15999 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] No file R-exts.vrs. (Concept index) [190] No file R-exts.cps. [191] ) (see the transcript file for additional information) Output written on R-exts.pdf (194 pages, 915134 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2431--2431 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2433--2433 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2746--2746 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4419--4419 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4438--4438 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4812--4812 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4814--4814 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4815--4815 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4830--4830 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] Underfull \hbox (badness 7558) in paragraph at lines 4884--4888 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [55] [56] [57] [58] [59] [60] [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5487--5487 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6026--6036 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7068--7075 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7247--7253 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8541--8550 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8806--8816 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 8820--8821 [][][]@smallrm see [][]@smalltt http:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8958--8958 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 8986--8988 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9132--9132 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9503--9503 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9522--9522 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9533--9533 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [111] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9563--9563 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10406--10406 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10983--10983 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11825--11827 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12865--12865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12965--12965 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13688--13693 @texttt fortran-compiler-developer-guide-and-reference/ top/ compiler-referen ce/ [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 14900--14906 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15311--15311 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15369--15369 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15872--15879 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 15995--15999 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.vrs [190] [191] [192]) Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [193] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.cps [194]) [195] ) (see the transcript file for additional information) Output written on R-exts.pdf (201 pages, 979501 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2431--2431 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2433--2433 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2746--2746 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4419--4419 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4438--4438 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4812--4812 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4814--4814 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4815--4815 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4830--4830 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] Underfull \hbox (badness 7558) in paragraph at lines 4884--4888 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [55] [56] [57] [58] [59] [60] [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5487--5487 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6026--6036 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7068--7075 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7247--7253 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8541--8550 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8806--8816 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 8820--8821 [][][]@smallrm see [][]@smalltt http:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8958--8958 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 8986--8988 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9132--9132 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9503--9503 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9522--9522 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9533--9533 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [111] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9563--9563 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10406--10406 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10983--10983 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11825--11827 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12865--12865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12965--12965 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13688--13693 @texttt fortran-compiler-developer-guide-and-reference/ top/ compiler-referen ce/ [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 14900--14906 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15311--15311 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15369--15369 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15872--15879 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 15995--15999 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.vrs [190] [191] [192]) Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [193] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.cps [194]) [195] ) (see the transcript file for additional information) Output written on R-exts.pdf (201 pages, 979519 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] No file R-intro.vrs. Appendix E [94] No file R-intro.cps. Appendix F [95] [96] ) (see the transcript file for additional information) Output written on R-intro.pdf (99 pages, 571158 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 627713 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 627722 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3874--3879 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] No file R-ints.vrs. (Concept index) [63] No file R-ints.cps. [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (67 pages, 402346 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3874--3879 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.vrs [63]) (Concept index) [64] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.cps) [65] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 452944 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3874--3879 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.vrs [63]) (Concept index) [64] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-ints.cps) [65] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 452942 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4336--4338 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 326155 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4336--4338 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374559 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4336--4338 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374568 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc' + cp doc/manual/R-exts.texi doc/manual/R-exts.texi.spot + cp doc/manual/R-intro.texi doc/manual/R-intro.texi.spot + sed -i 's|@eqn|@math|g' doc/manual/R-exts.texi + sed -i 's|@eqn|@math|g' doc/manual/R-intro.texi + make MAKEINFO=texi2any info make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc' + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ + mv doc/FAQ.utf8 doc/FAQ + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ewZ1hU + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 ++ dirname /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 + cd R-4.0.3 + make DESTDIR=/builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 install install-info mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc' installing doc ... mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/man/man1 make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/html' installing doc/html ... mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R/html make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/manual' installing doc/manual ... mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R/manual mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R/manual/images make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/etc' mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/etc installing etc ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/share' installing share ... mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/R mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/dictionaries mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/encodings mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/java mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/licenses mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/make mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/Rd mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/Rd/macros mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/sh mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/texmf mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/texmf/bibtex/bib mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/texmf/bibtex/bst mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/texmf/tex/latex make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/scripts' mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/bin mkdir -p -- 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directory '/builddir/build/BUILD/R-4.0.3/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/pkgconfig make[2]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/exec 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'/builddir/build/BUILD/R-4.0.3/doc/manual' + mv doc/manual/R-exts.texi.spot doc/manual/R-exts.texi + mv doc/manual/R-intro.texi.spot doc/manual/R-intro.texi + make DESTDIR=/builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 install-pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2431--2431 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2433--2433 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2746--2746 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4419--4419 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4438--4438 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4812--4812 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4814--4814 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4815--4815 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4830--4830 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] Underfull \hbox (badness 7558) in paragraph at lines 4884--4888 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [55] [56] [57] [58] [59] [60] [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5487--5487 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6026--6036 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7068--7075 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7247--7253 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8541--8550 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8806--8816 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 8820--8821 [][][]@smallrm see [][]@smalltt http:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8958--8958 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 8986--8988 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9132--9132 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9503--9503 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9522--9522 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9533--9533 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [111] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9563--9563 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10406--10406 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10983--10983 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11825--11827 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12865--12865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12965--12965 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13688--13693 @texttt fortran-compiler-developer-guide-and-reference/ top/ compiler-referen ce/ [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 14900--14906 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15311--15311 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15369--15369 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15872--15879 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 15995--15999 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.vrs [190] [191] [192]) Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [193] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-exts.cps [194]) [195] ) (see the transcript file for additional information) Output written on R-exts.pdf (201 pages, 979519 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.0.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.0.3/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.0.3/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/builddir/build/BUILD/R-4.0.3/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 627722 bytes). Transcript written on R-intro.log. installing R manuals in PDF format ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/doc/manual' + rm -f /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/info/dir + rm -f /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/info/dir.old + mkdir -p /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R + install -p CAPABILITIES /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R + cd src/nmath/standalone + make install DESTDIR=/builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 make[1]: Entering directory '/builddir/build/BUILD/R-4.0.3/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.0.3/src/include' + mkdir -p /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/etc/ld.so.conf.d + echo /usr/lib64/R/lib + mkdir -p /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/library + touch -r README /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R/CAPABILITIES + touch -r README doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf + touch -r README /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/bin/R + sed -i 's|\..\/\..|/usr/lib64/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R/html/packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/bkde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/bkde2D.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/bkfe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/dpih.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/dpik.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/dpill.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/KernSmooth/html/locpoly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Aids2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Animals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Boston.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Cars93.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Cushings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/DDT.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/GAGurine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Insurance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/MASS-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Null.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/OME.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Pima.tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Rabbit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Rubber.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/SP500.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Sitka.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Sitka89.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Skye.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/Traffic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/UScereal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/UScrime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/VA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/abbey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/accdeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/addterm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/anorexia.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/anova.negbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/area.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/bacteria.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/bandwidth.nrd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/bcv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/beav1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/beav2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/biopsy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/birthwt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/boxcox.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/cabbages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/caith.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/cats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/cement.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/chem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/con2tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/confint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/contr.sdif.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/coop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/corresp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/cov.rob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/cov.trob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/cpus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/crabs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/deaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/denumerate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/dose.p.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/drivers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/dropterm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/eagles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/epil.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/eqscplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/farms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/fgl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/fitdistr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/forbes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/fractions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/galaxies.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/gamma.dispersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/gamma.shape.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/gehan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/genotype.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/geyser.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/gilgais.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/ginv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/glm.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/glm.nb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/glmmPQL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/hills.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/hist.scott.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/housing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/huber.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/hubers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/immer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/isoMDS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/kde2d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/ldahist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/leuk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/lm.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/lm.ridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/mcycle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/menarche.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/michelson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/minn38.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/motors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/muscle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/mvrnorm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/negative.binomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/painters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/pairs.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/parcoord.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/petrol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/phones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/plot.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/plot.mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/plot.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/polr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/profile.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/qda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/quine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/rational.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/renumerate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/rlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/rms.curv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/rnegbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/road.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/rotifer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/sammon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/ships.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/shoes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/shrimp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/stormer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/studres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/summary.loglm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/summary.negbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/summary.rlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/survey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/synth.tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/theta.md.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/MASS/html/topo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/CHMfactor-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/Cholesky-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/Cholesky.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/CsparseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/Schur-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/Schur.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/SparseM-conv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/Subassign-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/bdiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/boolean-matprod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/cBind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/chol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/ddenseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/ddiMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/denseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/dgCMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/dpoMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/drop0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/dsCMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/Matrix/html/dsRMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/CallExternal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Colon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Comparison.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Constants.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Encoding.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/EnvVar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Extract.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Extract.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Extract.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Extremes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Foreign-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Foreign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/La_version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Last.value.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Log.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Logic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/LongVectors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/MathFun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Memory-limits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Memory.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/NA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/NULL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/NumericConstants.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Ops.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Paren.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Platform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Recall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Reserved.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Rhome.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Round.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/S3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Signals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Special.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Startup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Syntax.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.getenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.getpid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.glob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.localeconv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.readlink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.setFileTime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.setenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.sleep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Sys.which.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Trig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/UTF8filepaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/UseMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Vectorize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/Version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/abbreviate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/agrep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/all.equal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/all.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/allnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/any.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/aperm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/append.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/apply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/args.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/as.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/as.POSIXlt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/as.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/as.environment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/as.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/asplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/assign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/assignOps.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/attach.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/attr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/attributes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/autoload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/backsolve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/base-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/base-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/base-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/base-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/basename.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/bincode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/bindenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/builtins.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/by.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/c.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/callCC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/capabilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/cat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/cbind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/char.expand.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/character.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/charmatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/chartr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/chkDots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/chol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/commandArgs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/comment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/complex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/conditions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/conflicts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/connections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/contributors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/copyright.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/crossprod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/cumsum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/curlGetHeaders.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/cut.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/cut.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/data.class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/data.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dataframeHelpers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dcf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/debug.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/delayedAssign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/deparse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/deparseOpts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/det.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/detach.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/diff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/difftime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dimnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/do.call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dontCheck.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/double.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dput.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/drop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/droplevels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dump.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/duplicated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/dynload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/eapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/eigen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/encodeString.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/environment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/eval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/exists.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/expand.grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/expression.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/extSoftVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/file.access.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/file.choose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/file.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/file.path.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/file.show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/files2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/find.package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/findInterval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/force.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/forceAndCall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/formals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/format.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/format.pval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/formatDL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/formatc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/funprog.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/gc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/gc.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/gctorture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/getCallingDLL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/getDLLRegisteredRoutines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/getLoadedDLLs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/getNativeSymbolInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/gettext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/getwd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/gl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/grep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/grepRaw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/groupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/grouping.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/gzcon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/hexmode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/iconv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/icuSetCollate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/identical.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/identity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ifelse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/integer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/interaction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/interactive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/invisible.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.finite.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.language.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.recursive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.single.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/is.unsorted.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/isR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/isS4.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/isSymmetric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/jitter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/kappa.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/kronecker.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/l10n_info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/labels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/lapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/lazyload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/length.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/lengths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/levels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/libPaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/libcurlVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/library.dynam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/library.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/license.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/list.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/list2DF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/list2env.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/load.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/locales.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/logical.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/lower.tri.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/make.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/make.unique.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/mapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/marginSums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/mat.or.vec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/match.arg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/match.call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/match.fun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/match.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/matmult.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/maxCol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/mean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/memCompress.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/memlimits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/memory.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/merge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/message.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/missing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/mode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/name.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/nargs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/nchar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/nlevels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/noquote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/norm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/normalizePath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/notyet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/nrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ns-dblcolon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ns-hooks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ns-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ns-load.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ns-reflect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/ns-topenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/numeric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/numeric_version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/octmode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/on.exit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/order.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/outer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/parse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/paste.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/path.expand.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/pcre_config.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/pmatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/polyroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/pos.to.env.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/pretty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/print.dataframe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/print.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/print.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/prmatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/proc.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/prod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/proportions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/pushBack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/qr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/qraux.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/quit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/range.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/raw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rawConnection.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rawConversion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/readBin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/readChar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/readLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/readRDS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/readRenviron.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/readline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/reg.finalizer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/regex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/regmatches.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/replace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/round.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/row.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/row.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/rowsum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sQuote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sample.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/save.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/scale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/scan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/search.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/seek.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/seq.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/seq.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/seq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sequence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/serialize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/setTimeLimit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/shQuote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/showConnections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/slice.index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/slotOp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/socketSelect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/solve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sort.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/source.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/split.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sprintf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/srcfile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/standardGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/startsWith.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/stop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/stopifnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/strptime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/strrep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/strsplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/strtoi.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/strtrim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/structure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/strwrap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/subset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/substitute.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/substr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/summary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/svd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sweep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/switch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sys.parent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/sys.source.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/system.file.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/system.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/system.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/taskCallback.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/taskCallbackManager.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/taskCallbackNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/tempfile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/textconnections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/tilde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/timezones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/toString.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/trace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/traceback.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/tracemem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/transform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/trimws.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/try.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/typeof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/unique.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/unlink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/unlist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/unname.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/userhooks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/utf8Conversion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/validUTF8.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/vector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/warning.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/warnings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/weekday.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/which.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/which.min.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/with.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/withVisible.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/write.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/writeLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/xtfrm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/zMachine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/zScript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/zapsmall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/zpackages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/base/html/zutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/EEF.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/Imp.Estimates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/abc.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/acme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/aids.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/aircondit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/amis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/aml.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/beaver.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/bigcity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/boot-practicals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/boot.array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/boot.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/brambles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/breslow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/calcium.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cane.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/capability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/catsM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cav.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cd4.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cd4.nested.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/censboot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/channing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/claridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cloth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/co.transfer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/coal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/corr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cum3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/cv.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/darwin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/dogs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/downs.bc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/ducks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/empinf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/envelope.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/exp.tilt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/fir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/freq.array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/frets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/glm.diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/glm.diag.plots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/gravity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/hirose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/imp.weights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/inv.logit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/islay.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/jack.after.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/k3.linear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/linear.approx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/lines.saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/logit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/manaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/motor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/neuro.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/nitrofen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/nodal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/norm.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/nuclear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/paulsen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/plot.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/poisons.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/polar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/print.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/print.bootci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/print.saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/print.simplex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/remission.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/saddle.distn.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/saddle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/salinity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/simplex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/simplex.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/smooth.f.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/sunspot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/survival.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/tau.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/tilt.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/tsboot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/tuna.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/urine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/var.linear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/boot/html/wool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/SOM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/batchSOM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/condense.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/knn.cv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/knn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/knn1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/lvq1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/lvq2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/lvq3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/lvqinit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/lvqtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/multiedit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/olvq1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/reduce.nn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/class/html/somgrid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/agnes.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/agriculture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/animals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/bannerplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/chorSub.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/clara.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/clusGap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/clusplot.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/clusplot.partition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/cluster-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/coef.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/daisy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/dissimilarity.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/ellipsoidhull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/fanny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/fanny.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/flower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/mona.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/pam.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/partition.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/plantTraits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/plot.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/plot.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/plot.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/plot.partition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/pltree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/pluton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/predict.ellipsoid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.dissimilarity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.fanny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/print.pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/ruspini.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/silhouette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/sizeDiss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/summary.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/summary.clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/summary.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/summary.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/summary.pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/twins.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/volume.ellipsoid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/votes.repub.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/cluster/html/xclara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/codetools/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/codetools/html/checkUsage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/codetools/html/codetools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/codetools/html/findGlobals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/codetools/html/showTree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/compiler/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/compiler/html/compile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/AirPassengers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/BJsales.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/BOD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/ChickWeight.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/DNase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/EuStockMarkets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Formaldehyde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/HairEyeColor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Harman23.cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Harman74.cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Indometh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/InsectSprays.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/JohnsonJohnson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/LakeHuron.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/LifeCycleSavings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Loblolly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Nile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Orange.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/OrchardSprays.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/PlantGrowth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Puromycin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Theoph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/Titanic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/ToothGrowth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/UCBAdmissions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/UKDriverDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/UKLungDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/UKgas.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/USAccDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/USArrests.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/USJudgeRatings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/VADeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/WWWusage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/WorldPhones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/ability.cov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/airmiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/airquality.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/anscombe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/attenu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/attitude.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/austres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/beavers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/cars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/chickwts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/co2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/crimtab.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/datasets-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/discoveries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/esoph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/euro.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/islands.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/lh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/longley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/lynx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/morley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/mtcars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/nhtemp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/nottem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/npk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/occupationalStatus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/precip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/presidents.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/pressure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/quakes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/randu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/rivers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/rock.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/sleep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/stackloss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/state.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/sunspot.month.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/sunspot.year.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/sunspots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/warpbreaks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/women.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/datasets/html/zCO2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/lookup.xport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.S.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.arff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.dbf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.dta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.epiinfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.mtp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.octave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.spss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.ssd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.systat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/read.xport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/write.arff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/write.dbf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/write.dta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/foreign/html/write.foreign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/Devices.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/Hershey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/Japanese.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/Type1Font.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/adjustcolor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/as.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/axisTicks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/boxplot.stats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/bringToTop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/cairo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/cairoSymbolFont.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/check.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/chull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/cm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/col2rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/colorRamp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/contourLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/convertColor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/densCols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev.capabilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev.capture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev.flush.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev.interactive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/dev2bitmap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/devAskNewPage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/embedFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/extendrange.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/grDevices-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/grSoftVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/gray.colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/gray.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/hcl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/hsv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/make.rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/msgWindow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/n2mfrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/nclass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/palette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/palettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/pdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/pdf.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/pictex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/plotmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/png.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/postscript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/postscriptFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/pretty.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/ps.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/quartz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/quartzFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/recordGraphics.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/recordplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/rgb2hsv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/savePlot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/trans3d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/windows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/windows.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/windowsFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/x11.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/x11Fonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/xfig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/xy.coords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/xyTable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grDevices/html/xyz.coords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/axis.POSIXct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/axis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/barplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/box.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/boxplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/boxplot.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/bxp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/cdplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/clip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/filled.contour.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/fourfoldplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/graphics-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/graphics-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/hist.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/hist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/identify.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/matplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/mosaicplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/mtext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/pairs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/panel.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/par.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/persp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/pie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/plot.dataframe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/plot.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/plot.window.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/plot.xy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/plothistogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/rug.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/screen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/segments.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/smoothScatter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/spineplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/stars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/stem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/stripchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/strwidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/sunflowerplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/symbols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/text.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/title.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/units.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/xspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/graphics/html/zAxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/Grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/absolute.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/arrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/calcStringMetric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/current.viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/dataViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/gEdit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/gPath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/getNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/gpar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.DLapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.add.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.copy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.curve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.delay.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.display.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.draw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.force.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.lines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.locator.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.move.to.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.newpage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.null.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.pack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.path.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.record.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.rect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.refresh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.remove.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.reorder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.roundrect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.segments.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.set.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.show.layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.show.viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.text.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.xaxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.xspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grid.yaxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grobCoords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grobName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grobWidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/grobX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/legendGrob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/makeContent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/plotViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/resolveRasterSize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/showGrob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/showViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/stringWidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/unit.c.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/unit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/unit.length.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/unit.pmin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/unit.rep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/unitType.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/valid.just.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/validDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/viewports.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/vpPath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/widthDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/xDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/grid/html/xsplinePoints.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/Lattice.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/Rows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/USMortality.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/axis.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/banking.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/barchart.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/barley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/cloud.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/draw.colorkey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/draw.key.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/environmental.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/ethanol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/histogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/interaction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/lattice.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/latticeParseFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/level.colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/levelplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/llines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/lset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/make.groups.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/oneway.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/packet.panel.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.axis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.barchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.bwplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.cloud.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.densityplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.dotplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.functions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.histogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.levelplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.number.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.pairs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.parallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.qqmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.qqmathline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.smoothScatter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.stripplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.superpose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.violin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/panel.xyplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/prepanel.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/prepanel.functions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/print.trellis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/qq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/qqmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/rfs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/shingles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/simpleKey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/simpleTheme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/singer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/splom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/strip.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/tmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/trellis.device.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/trellis.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/trellis.par.get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/update.trellis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/utilities.3d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/xyplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/lattice/html/xyplot.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/EnvironmentClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/GenericFunctions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/Introduction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/Methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/MethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/MethodsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/Methods_Details.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/Methods_for_S3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/NextMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/RClassUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/RMethodUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/S3Part.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/S4groupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/SClassExtension-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/cbind2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/className.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/classRepresentation-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/classesToAM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/dotsMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/evalSource.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/findClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/findMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/fixPrevious.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/genericFunction-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/getClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/getMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/getPackageName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/hasArg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/implicitGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/inheritedSlotNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/initialize-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/is.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/isSealedMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/languageEl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/localRefClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/method.skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/methodUtilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/methods-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/methods-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/methods-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/new.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/nonStructure-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/promptClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/promptMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/refClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/removeMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/representation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/selectSuperClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setAs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setClassUnion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setGroupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setIs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setLoadActions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setOldClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/setSClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/showMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/signature-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/slot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/stdRefClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/substituteDirect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/testInheritedMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/validObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/methods/html/zBasicFunsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Beta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/FFdes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Predict.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Rrank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Sl.repara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Sl.setup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/Tweedie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/XWXd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/anova.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/bam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/html/bam.update.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Dialyzer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Dim.corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Dim.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Dim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Dim.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Earthquake.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Extract.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Fatigue.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Gasoline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/LDEsysMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Machines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/MathAchSchool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/MathAchieve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Names.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Nitrendipene.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Oats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Orthodont.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Remifentanil.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Soybean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Spruce.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Tetracycline1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.corRatio.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.corSpher.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Variogram.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Wafer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Wheat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/Wheat2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/allCoef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/anova.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/anova.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/asOneFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/asTable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/augPred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/balancedGrouped.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/bdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/coef.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/collapse.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/collapse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/comparePred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corAR1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corARMA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corCAR1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corCompSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corFactor.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corFactor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corGaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corLin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corNatural.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corRatio.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corSpher.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/corSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/ergoStool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fdHess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fitted.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fitted.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fitted.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fixed.effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/fixef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/formula.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/formula.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/formula.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getCovariate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getCovariateFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getData.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getData.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getData.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroups.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getGroupsFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getResponse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getResponseFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/getVarCov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gls-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/glsControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/glsObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gnlsControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gnlsObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/gsummary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/intervals.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/intervals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/intervals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/intervals.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/isBalanced.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/isInitialized.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lmList.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lme.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lme.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lmeControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lmeObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logDet.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logDet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logDet.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logDet.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/logLik.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/needUpdate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlme.nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlmeControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlmeObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/nlsList.selfStart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pairs.compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pairs.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pairs.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdCompSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdConstruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdDiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdFactor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdIdent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdLogChol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdNatural.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pdSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/phenoModel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.ACF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.Variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.augPred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/plot.ranef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/pooledSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/predict.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/predict.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/predict.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/predict.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/predict.nlme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/print.summary.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/print.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/qqnorm.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/qqnorm.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/quinModel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/random.effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/ranef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/ranef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/recalc.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/recalc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/recalc.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/recalc.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/recalc.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/simulate.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/solve.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/solve.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/splitFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/summary.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/update.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/update.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varComb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varConstPower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varFixed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varIdent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varPower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varWeights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nnet/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nnet/html/class.ind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nnet/html/multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nnet/html/nnet.Hess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/nnet/html/nnet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/clusterApply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/detectCores.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/makeCluster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/mcaffinity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/mcfork.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/mclapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/mcparallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/parallel-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/parallel/html/pvec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/kyphosis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/labels.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/meanvar.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/na.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/path.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/plot.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/plotcp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/post.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/predict.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/rpart.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/rpart.exp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/rpart.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/rsq.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/snip.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/solder.balance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/stagec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/rpart/html/summary.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/Kfn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/Psim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/SSI.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/Strauss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/anova.trls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/correlogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/expcov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/ppgetregion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/ppinit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/surf.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/surf.ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/trls.influence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/trmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/spatial/html/variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/asVector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/backSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/bs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/interpSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/ns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/periodicSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/polySpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/predict.bSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/predict.bs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/splineDesign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/splineKnots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/splineOrder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/splines-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/splines/html/xyVector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/AIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ARMAacf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ARMAtoMA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Beta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Binomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Cauchy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Chisquare.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Distributions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Exponential.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Fdist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/GammaDist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Geometric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Hypergeometric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/IQR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/KalmanLike.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Logistic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Lognormal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/NLSstAsymptotic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/NLSstClosestX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/NLSstLfAsymptote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/NLSstRtAsymptote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/NegBinomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Normal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Pair.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Poisson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSasymp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSasympOff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSasympOrig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSbiexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSfol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSfpl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSgompertz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSlogis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSmicmen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SSweibull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/SignRank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/StructTS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/TDist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Tukey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/TukeyHSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Uniform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Weibull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/Wilcoxon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/acf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/acf2AR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/add1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/addmargins.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/aggregate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/alias.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/anova.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/anova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/anova.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/anova.mlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ansari.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/aov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/arima0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/as.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/asOneSidedFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/bandwidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/bartlett.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/binom.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/biplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/biplot.princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/chisq.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/cmdscale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/coef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/complete.cases.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/confint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/constrOptim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/contrast.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/contrasts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/convolve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/density.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/deriv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/deviance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/df.residual.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/embed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/expand.model.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/extractAIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/factanal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/factor.scope.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/family.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/fft.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/filter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/fisher.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/fitted.values.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/fivenum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/fligner.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/formula.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/friedman.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ftable.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ftable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/getInitial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/glm.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/glm.summaries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/heatmap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/identify.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/influence.measures.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/integrate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/interaction.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/is.empty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/isoreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/kernapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/kernel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/kmeans.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/kruskal.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ks.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ksmooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lag.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/line.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/listof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lm.influence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lm.summaries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lmfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/loadings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/loess.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/logLik.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/loglin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lowess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ls.diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ls.print.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/lsfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/mad.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/mahalanobis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/make.link.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/makepredictcall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/manova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/mantelhaen.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/mauchly.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/mcnemar.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/median.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/medpolish.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/model.extract.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/model.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/model.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/model.tables.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/monthplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/mood.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/na.action.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/na.contiguous.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/na.fail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nafns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/naprint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nextn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nlminb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nls.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/nobs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/numericDeriv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/offset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/oneway.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/optim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/optimize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/order.dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/p.adjust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/pairwise.prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/pairwise.t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/pairwise.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.acf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.density.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.isoreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.ppr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.profile.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.spec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.stepfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/plot.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/poisson.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/poly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/power.anova.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/power.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/power.prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/power.t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/pp.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ppoints.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ppr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/prcomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.arima.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/predict.smooth.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/preplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/print.power.htest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/print.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/printCoefmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/profile.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/proj.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/prop.trend.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/qqnorm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/quade.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/quantile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/r2dtable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/rWishart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/read.ftable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/rect.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/relevel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/reorder.dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/reorder.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/replications.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/reshape.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/residuals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/runmed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/scatter.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/screeplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/sd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/se.contrast.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/selfStart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/setNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/shapiro.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/sigma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/simulate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/smooth.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/smoothEnds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/sortedXyData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/spec.ar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/spec.pgram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/spec.taper.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/spectrum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/splinefun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/start.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/stat.anova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/stats-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/stats-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/stats-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/step.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/stepfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/summary.manova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/summary.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/summary.princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/supsmu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/symnum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/termplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/terms.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/terms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ts.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/ts.union.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/tsSmooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/tsdiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/tsp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/uniroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/update.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/update.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/var.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/wilcox.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/window.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/xtabs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats/html/zC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/coef-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/confint-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/logLik-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/mle-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/stats4-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/summary-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/summary.mle-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/update-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/stats4/html/vcov-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/Surv2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/Surv2data.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/anova.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/attrassign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/basehaz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/bladder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/cch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/cgd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/cgd0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/cipoisson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/clogit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/coxph.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/coxph.detail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/coxph.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/coxph.wtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/coxsurv.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/diabetic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/dsurvreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/finegray.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/kidney.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/levels.Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/lines.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/logLik.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/logan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/lung.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/mgus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/mgus2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/model.frame.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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-i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/ovarian.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/pbc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/pbcseq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/plot.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/plot.cox.zph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/plot.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/predict.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/predict.survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/print.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/pyears.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/quantile.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/ratetable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/ratetableDate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/rats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/rats2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/reliability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/residuals.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/residuals.survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/retinopathy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/rhDNase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/ridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/rotterdam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/royston.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/rttright.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/solder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/stanford2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/statefig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/strata.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/summary.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/summary.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/summary.pyears.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/summary.survexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/summary.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survConcordance-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survSplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survcheck.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survfit.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survfit.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survfit.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survreg.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survreg.distributions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/survreg.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/xtfrm.Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/yates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/survival/html/yates_setup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tcltk-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tcltk-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tkProgressBar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tkStartGUI.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tk_choose.dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tk_choose.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tk_messageBox.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tk_select.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tcltk/html/tkpager.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/Rcmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/Rd2HTML.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/Rd2txt_options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/RdTextFilter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/Rdiff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/Rdindex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/Rdutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/SweaveTeXFilter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/add_datalist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/assertCondition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/bibstyle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/buildVignette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/buildVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/charsets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkFF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkMD5sums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkPoFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkRd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkRdaFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkTnF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/checkVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/check_packages_in_dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/codoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/compactPDF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/delimMatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/dependsOnPkgs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/encoded.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/fileutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/find_gs_cmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/getVignetteInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/loadRdMacros.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/makeLazyLoading.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/make_translations_pkg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/makevars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/md5sum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/package_dependencies.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/parseLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/parse_Rd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/print.via.format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/pskill.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/psnice.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/read.00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/showNonASCII.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/startDynamicHelp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/testInstalledPackage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/texi2dvi.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/toHTML.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/toRd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/toTitleCase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/tools-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/tools-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/tools-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/undoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/updatePACKAGES.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/update_pkg_po.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/userdir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/vignetteEngine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/vignetteInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/writePACKAGES.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/tools/html/xgettext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/BATCH.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/COMPILE.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/DLL.version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/INSTALL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/LINK.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/PkgUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Question.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/REMOVE.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/RHOME.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/RShowDoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/RSiteSearch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Rconsole.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Rprof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Rprofmem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Rscript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Rtangle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/RweaveLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/SHLIB.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/Sweave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/SweaveSyntConv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/SweaveUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/URLencode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/View.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/adist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/alarm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/apropos.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/aregexec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/arrangeWindows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/askYesNo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/aspell-utils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/aspell.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/available.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/bibentry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/browseEnv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/browseURL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/browseVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/bug.report.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/capture.output.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/changedFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/choose.dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/choose.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/chooseBioCmirror.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/chooseCRANmirror.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/citEntry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/citation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/cite.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/clipboard.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/close.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/combn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/compareVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/contrib.url.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/count.fields.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/create.post.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/data.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/dataentry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/debugcall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/debugger.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/demo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/download.file.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/download.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/edit.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/example.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/file.edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/filetest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/findLineNum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/fix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/flush.console.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/getAnywhere.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/getFromNamespace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/getParseData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/getS3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/getWindowsHandle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/getWindowsHandles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/glob2rx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/globalVariables.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/hasName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/head.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/help.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/help.request.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/help.search.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/help.start.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/hsearch-utils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/install.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/installed.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/isS3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/isS3stdGen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/localeToCharset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/ls_str.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/maintainer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/make.packages.html.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/make.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/memory.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/menu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/mirrorAdmin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/modifyList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/news.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/nsl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/object.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/package.skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/packageDescription.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/packageName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/packageStatus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/page.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/person.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/process.events.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/prompt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/promptData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/promptPackage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/rcompgen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/read.DIF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/read.fortran.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/read.fwf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/read.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/read.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/readRegistry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/recover.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/relist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/remove.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/removeSource.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/roman.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/rtags.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/savehistory.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/select.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/sessionInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/setRepositories.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/setWindowTitle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/shortPathName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/sourceutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/stack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/str.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/strcapture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/summaryRprof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/tar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/toLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/txtProgressBar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/type.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/untar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/unzip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/update.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/url.show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/utils-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/utils-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/utils-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/vignette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/warnErrList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/winDialog.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/winMenus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/winProgressBar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/winextras.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/write.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/utils/html/zip.html + chmod +x /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/R/sh/echo.sh + chmod +x /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/BATCH /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/COMPILE /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/INSTALL /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/LINK /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/R /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/REMOVE /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/Rcmd /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/Rd2pdf /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/Rdconv /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/Rdiff 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/builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/rtags + chmod -x /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/R/CAPABILITIES + '[' '!' -d /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/include ']' ~/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R ~/build/BUILD/R-4.0.3 + pushd /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R + ln -s ../../include/R include + popd ~/build/BUILD/R-4.0.3 + '[' '!' -d /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/texmf/tex/latex/R ']' + mkdir -p /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/texmf/tex/latex + pushd /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/texmf/tex/latex ~/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/texmf/tex/latex ~/build/BUILD/R-4.0.3 + ln -s /usr/share/R/texmf/tex/latex R + popd ~/build/BUILD/R-4.0.3 + /usr/lib/rpm/find-debuginfo.sh -j5 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cpio: src/main/pexp.c: Cannot stat: No such file or directory cpio: src/main/pf.c: Cannot stat: No such file or directory cpio: src/main/pgamma.c: Cannot stat: No such file or directory cpio: src/main/pgeom.c: Cannot stat: No such file or directory cpio: src/main/phyper.c: Cannot stat: No such file or directory cpio: src/main/plnorm.c: Cannot stat: No such file or directory cpio: src/main/plogis.c: Cannot stat: No such file or directory cpio: src/main/pnbeta.c: Cannot stat: No such file or directory cpio: src/main/pnbinom.c: Cannot stat: No such file or directory cpio: src/main/pnchisq.c: Cannot stat: No such file or directory cpio: src/main/pnf.c: Cannot stat: No such file or directory cpio: src/main/pnorm.c: Cannot stat: No such file or directory cpio: src/main/pnt.c: Cannot stat: No such file or directory cpio: src/main/polygamma.c: Cannot stat: No such file or directory cpio: src/main/ppois.c: Cannot stat: No such file or directory cpio: src/main/pretty.c: Cannot stat: No such file or directory cpio: src/main/pt.c: Cannot stat: No such file or directory cpio: src/main/ptukey.c: Cannot stat: No such file or directory cpio: src/main/punif.c: Cannot stat: No such file or directory cpio: src/main/pweibull.c: Cannot stat: No such file or directory cpio: src/main/qbeta.c: Cannot stat: No such file or directory cpio: src/main/qbinom.c: Cannot stat: No such file or directory cpio: src/main/qcauchy.c: Cannot stat: No such file or directory cpio: src/main/qchisq.c: Cannot stat: No such file or directory cpio: src/main/qexp.c: Cannot stat: No such file or directory cpio: src/main/qf.c: Cannot stat: No such file or directory cpio: src/main/qgamma.c: Cannot stat: No such file or directory cpio: src/main/qgeom.c: Cannot stat: No such file or directory cpio: src/main/qhyper.c: Cannot stat: No such file or directory cpio: src/main/qlnorm.c: Cannot stat: No such file or directory cpio: src/main/qlogis.c: Cannot stat: No such file or directory cpio: src/main/qnbeta.c: Cannot stat: No such file or directory cpio: src/main/qnbinom.c: Cannot stat: No such file or directory cpio: src/main/qnchisq.c: Cannot stat: No such file or directory cpio: src/main/qnf.c: Cannot stat: No such file or directory cpio: src/main/qnorm.c: Cannot stat: No such file or directory cpio: src/main/qnt.c: Cannot stat: No such file or directory cpio: src/main/qpois.c: Cannot stat: No such file or directory cpio: src/main/qt.c: Cannot stat: No such file or directory cpio: src/main/qtukey.c: Cannot stat: No such file or directory cpio: src/main/qunif.c: Cannot stat: No such file or directory cpio: src/main/qweibull.c: Cannot stat: No such file or directory cpio: src/main/rbeta.c: Cannot stat: No such file or directory cpio: src/main/rbinom.c: Cannot stat: No such file or directory cpio: src/main/rcauchy.c: Cannot stat: No such file or directory cpio: src/main/rchisq.c: Cannot stat: No such file or directory cpio: src/main/rexp.c: Cannot stat: No such file or directory cpio: src/main/rf.c: Cannot stat: No such file or directory cpio: src/main/rgamma.c: Cannot stat: No such file or directory cpio: src/main/rgeom.c: Cannot stat: No such file or directory cpio: src/main/rhyper.c: Cannot stat: No such file or directory cpio: src/main/rlnorm.c: Cannot stat: No such file or directory cpio: src/main/rlogis.c: Cannot stat: No such file or directory cpio: src/main/rmultinom.c: Cannot stat: No such file or directory cpio: src/main/rnbinom.c: Cannot stat: No such file or directory cpio: src/main/rnchisq.c: Cannot stat: No such file or directory cpio: src/main/rnorm.c: Cannot stat: No such file or directory cpio: src/main/rpois.c: Cannot stat: No such file or directory cpio: src/main/rt.c: Cannot stat: No such file or directory cpio: src/main/runif.c: Cannot stat: No such file or directory cpio: src/main/rweibull.c: Cannot stat: No such file or directory cpio: src/main/sexp.c: Cannot stat: No such file or directory cpio: src/main/sign.c: Cannot stat: No such file or directory cpio: src/main/signrank.c: Cannot stat: No such file or directory cpio: src/main/snorm.c: Cannot stat: No such file or directory cpio: src/main/stirlerr.c: Cannot stat: No such file or directory cpio: src/main/sys-std.c: Cannot stat: No such file or directory cpio: src/main/sys-unix.c: Cannot stat: No such file or directory cpio: src/main/system.c: Cannot stat: No such file or directory cpio: src/main/toms708.c: Cannot stat: No such file or directory cpio: src/main/uncmin.c: Cannot stat: No such file or directory cpio: src/main/wilcox.c: Cannot stat: No such file or directory cpio: src/main/xdr.c: Cannot stat: No such file or directory cpio: src/main/xdr_float.c: Cannot stat: No such file or directory cpio: src/main/xdr_mem.c: Cannot stat: No such file or directory cpio: src/main/xdr_stdio.c: Cannot stat: No such file or directory 19514 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/bin/true Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.0NwB2T + umask 022 + cd /builddir/build/BUILD + cd R-4.0.3 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-4.0.3-1.fc33.aarch64 Processing files: R-core-4.0.3-1.fc33.aarch64 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib64/R/bin/Rscript warning: absolute symlink: /usr/share/texmf/tex/latex/R -> /usr/share/R/texmf/tex/latex Provides: R(ABI) = 4.0 R(KernSmooth) = 2.23-17 R(MASS) = 7.3-53 R(Matrix) = 1.2-18 R(base) = 4.0.3 R(boot) = 1.3-25 R(class) = 7.3-17 R(cluster) = 2.1.0 R(codetools) = 0.2-16 R(compiler) = 4.0.3 R(datasets) = 4.0.3 R(foreign) = 0.8-80 R(grDevices) = 4.0.3 R(graphics) = 4.0.3 R(grid) = 4.0.3 R(lattice) = 0.20-41 R(methods) = 4.0.3 R(mgcv) = 1.8-33 R(nlme) = 3.1-149 R(nnet) = 7.3-14 R(parallel) = 4.0.3 R(rpart) = 4.1-15 R(spatial) = 7.3-12 R(splines) = 4.0.3 R(stats) = 4.0.3 R(stats4) = 4.0.3 R(survival) = 3.2-7 R(tcltk) = 4.0.3 R(tools) = 4.0.3 R(translations) = 4.0.3 R(utils) = 4.0.3 R-KernSmooth = 2.23.17 R-MASS = 7.3.53 R-Matrix = 1.2.18 R-base = 4.0.3 R-boot = 1.3.25 R-class = 7.3.17 R-cluster = 2.1.0 R-codetools = 0.2.16 R-compiler = 4.0.3 R-core = 4.0.3-1.fc33 R-core(aarch-64) = 4.0.3-1.fc33 R-datasets = 4.0.3 R-foreign = 0.8.80 R-grDevices = 4.0.3 R-graphics = 4.0.3 R-grid = 4.0.3 R-lattice = 0.20.41 R-methods = 4.0.3 R-mgcv = 1.8.33 R-nlme = 3.1.149 R-nnet = 7.3.14 R-parallel = 4.0.3 R-rpart = 4.1.15 R-spatial = 7.3.12 R-splines = 4.0.3 R-stats = 4.0.3 R-stats4 = 4.0.3 R-survival = 3.2.7 R-tcltk = 4.0.3 R-tools = 4.0.3 R-translations = 4.0.3 R-utils = 4.0.3 config(R-core) = 4.0.3-1.fc33 libR.so()(64bit) Requires(interp): /bin/sh /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires(posttrans): /bin/sh Requires: /bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.67()(64bit) libicuuc.so.67()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: R-Matrix < 0.999375-7 Recommends: cups Processing files: R-core-devel-4.0.3-1.fc33.aarch64 Provides: R-Matrix-devel = 1.2.18 R-core-devel = 4.0.3-1.fc33 R-core-devel(aarch-64) = 4.0.3-1.fc33 pkgconfig(libR) = 4.0.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Obsoletes: R-Matrix-devel < 0.999375-7 Processing files: R-devel-4.0.3-1.fc33.aarch64 Processing files: R-java-4.0.3-1.fc33.aarch64 Processing files: R-java-devel-4.0.3-1.fc33.aarch64 Processing files: libRmath-4.0.3-1.fc33.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4uwa9R + umask 022 + cd /builddir/build/BUILD + cd R-4.0.3 + DOCDIR=/builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/libRmath + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/libRmath + cp -pr doc/COPYING /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/share/doc/libRmath + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRmath = 4.0.3-1.fc33 libRmath(aarch-64) = 4.0.3-1.fc33 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) rtld(GNU_HASH) Processing files: libRmath-devel-4.0.3-1.fc33.aarch64 Provides: libRmath-devel = 4.0.3-1.fc33 libRmath-devel(aarch-64) = 4.0.3-1.fc33 pkgconfig(libRmath) = 4.0.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: libRmath-static-4.0.3-1.fc33.aarch64 Provides: libRmath-static = 4.0.3-1.fc33 libRmath-static(aarch-64) = 4.0.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debugsource-4.0.3-1.fc33.aarch64 Provides: R-debugsource = 4.0.3-1.fc33 R-debugsource(aarch-64) = 4.0.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debuginfo-4.0.3-1.fc33.aarch64 Provides: R-debuginfo = 4.0.3-1.fc33 R-debuginfo(aarch-64) = 4.0.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(aarch-64) = 4.0.3-1.fc33 Processing files: R-core-debuginfo-4.0.3-1.fc33.aarch64 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib/debug/usr/bin/Rscript-4.0.3-1.fc33.aarch64.debug and /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64/usr/lib/debug/usr/lib64/R/bin/Rscript-4.0.3-1.fc33.aarch64.debug Provides: R-core-debuginfo = 4.0.3-1.fc33 R-core-debuginfo(aarch-64) = 4.0.3-1.fc33 debuginfo(build-id) = 0d616c2be69a30c2669c608e94a0ec327efee1c8 debuginfo(build-id) = 0fa221174762609f9847a611be99868e6dce7c2a debuginfo(build-id) = 10050013a90275193b67a7ec2e83e53a111e0a83 debuginfo(build-id) = 13142501ac21f11a371f80c84990658655f2f0bf debuginfo(build-id) = 165dfd16b7a62ce6bdbf07c387dd45083a86c0ce debuginfo(build-id) = 1fcc33c88825da6e8b8270725db48e571215145d debuginfo(build-id) = 2f78d19553d83b471703e5ca3d2cbd853f027d2d debuginfo(build-id) = 321bae511514e788d04c9c055e16f1fcdb38ad68 debuginfo(build-id) = 359af3b033cd96e14031d30d2c7f6264ad305146 debuginfo(build-id) = 3be526231c0d8410110f6a87232a3dc708a5b968 debuginfo(build-id) = 3c290b4d1261a7a569c94967862900d46cf46159 debuginfo(build-id) = 5b6a770e38fcf72fa5226e8727263c292201d9f5 debuginfo(build-id) = 64f0428f66ebccc4c2b8e95e65c56664053e5355 debuginfo(build-id) = 6a547373ef1209fd5d45ada876bd0af8a2ba21e5 debuginfo(build-id) = 7920f6533371a80650c8b64994530d71ad251f3b debuginfo(build-id) = 8e7f3abad50e0ef53c589923d6aeab11ff6e7e35 debuginfo(build-id) = 8ebbfe2c40d0356357b8ce2acec14ca1181a4766 debuginfo(build-id) = 92d7eb24b86c207b3ccd114f0eddb4aba9c38a2e debuginfo(build-id) = 9398b856b779198f2e5f583c72ad114bfc4ea267 debuginfo(build-id) = 9d01b942ec27f63d83a65e39cecd4089ad2c8ea7 debuginfo(build-id) = a5b2ba6f6bec03a9f42308d117a3fc55195c819c debuginfo(build-id) = b8e1a2343040108e0f3c1e27e2b6d0078dfe115f debuginfo(build-id) = ba0de70e5b436a726144db20748c8a19a85217ff debuginfo(build-id) = bae7aa5fd115ffcfbebaf93543f7183ad4875364 debuginfo(build-id) = bbbd0e41203b97188bc46af1a82e2c955083156d debuginfo(build-id) = c449adb604b1273d948bff81d9c0c077d8ce0671 debuginfo(build-id) = ca4afb7d2f4985654285e34f2a047f61a3e3a6ef debuginfo(build-id) = e1f8ae2c10ce704ee2fced81f6c5bc8f44e00522 debuginfo(build-id) = f097d7b1f0f21745ca4833852c74662d94c87c16 debuginfo(build-id) = f30c97056cde4348f9f8feb695f058af0b7c07d2 debuginfo(build-id) = fb120b023cbae48861055a689c17c22ffb9b24a2 debuginfo(build-id) = nilnil Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(aarch-64) = 4.0.3-1.fc33 Processing files: libRmath-debuginfo-4.0.3-1.fc33.aarch64 Provides: debuginfo(build-id) = d2ebe531922b1f11cf9b30e0b4442726c5d33cc0 libRmath-debuginfo = 4.0.3-1.fc33 libRmath-debuginfo(aarch-64) = 4.0.3-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(aarch-64) = 4.0.3-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/libRmath-static-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-core-devel-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-debuginfo-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/libRmath-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/libRmath-devel-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-devel-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-java-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-java-devel-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-debugsource-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-core-debuginfo-4.0.3-1.fc33.aarch64.rpm Wrote: /builddir/build/RPMS/R-core-4.0.3-1.fc33.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.znFQjS + umask 022 + cd /builddir/build/BUILD + cd R-4.0.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-4.0.3-1.fc33.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0