Mock Version: 2.11 Mock Version: 2.11 Mock Version: 2.11 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-xml2.spec'], chrootPath='/var/lib/mock/eln-build-28783739-3887793/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-xml2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1623369600 Wrote: /builddir/build/SRPMS/R-xml2-1.3.2-6.eln112.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-xml2.spec'], chrootPath='/var/lib/mock/eln-build-28783739-3887793/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-xml2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1623369600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.V2m0eg + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf xml2 + /usr/bin/mkdir -p xml2 + cd xml2 + /usr/bin/gzip -dc /builddir/build/SOURCES/xml2_1.3.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i 's/covr, //g' xml2/DESCRIPTION + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hAFTaS + umask 022 + cd /builddir/build/BUILD + cd xml2 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.GezHuj + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64 ++ dirname /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64 + cd xml2 + mkdir -p /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64/usr/lib64/R/library xml2 * installing *source* package 'xml2' ... file 'DESCRIPTION' has the wrong MD5 checksum ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/libxml2 Using PKG_LIBS=-lxml2 -lz -llzma -lm -ldl ** libs g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c connection.cpp -o connection.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_doc.cpp -o xml2_doc.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_init.cpp -o xml2_init.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_namespace.cpp -o xml2_namespace.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_node.cpp -o xml2_node.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_output.cpp -o xml2_output.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_schema.cpp -o xml2_schema.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_url.cpp -o xml2_url.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c xml2_xpath.cpp -o xml2_xpath.o g++ -std=gnu++14 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -lz -llzma -lm -ldl -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64/usr/lib64/R/library/00LOCK-xml2/00new/xml2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xml2' finding HTML links ... done as_list html as_xml_document html download_xml html oldclass html read_xml html url_absolute html url_escape html url_parse html write_xml html xml2_example html xml_attr html xml_cdata html xml_children html xml_comment html xml_dtd html xml_find_all html xml_missing html xml_name html xml_new_document html xml_ns html xml_ns_strip html xml_path html xml_replace html xml_serialize html xml_set_namespace html xml_structure html xml_text html xml_type html xml_url html xml_validate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xml2) + test -d xml2/src + cd xml2/src + rm -f connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o xml2.so + rm -f /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 1.3.2-6.eln112 --unique-debug-suffix -1.3.2-6.eln112.aarch64 --unique-debug-src-base R-xml2-1.3.2-6.eln112.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/xml2 extracting debug info from /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64/usr/lib64/R/library/xml2/libs/xml2.so original debug info size: 980kB, size after compression: 840kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 118 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.m1lWsX + umask 022 + cd /builddir/build/BUILD + cd xml2 + _R_CHECK_FORCE_SUGGESTS_=0 + /usr/bin/R CMD check xml2 --ignore-vignettes --no-examples * using log directory '/builddir/build/BUILD/xml2/xml2.Rcheck' * using R version 4.1.0 (2021-05-18) * using platform: aarch64-redhat-linux-gnu (64-bit) * using session charset: ASCII * using options '--no-examples --ignore-vignettes' * checking for file 'xml2/DESCRIPTION' ... OK * this is package 'xml2' version '1.3.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.13/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.13/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.13/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.13/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.13/data/experiment/src/contrib/PACKAGES' NOTE Packages suggested but not available for checking: 'curl', 'httr', 'knitr', 'rmarkdown' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'xml2' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... WARNING Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") : OS reports request to set locale to "en_US.UTF-8" cannot be honored * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Unknown packages 'curl', 'httr' in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... NOTE Package has both 'src/Makevars.in' and 'src/Makevars'. Installation with --no-configure' is unlikely to work. If you intended 'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win' otherwise remove it. If 'configure' created 'src/Makevars', you need a 'cleanup' script. * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See '/builddir/build/BUILD/xml2/xml2.Rcheck/00check.log' for details. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-xml2-1.3.2-6.eln112.aarch64 Provides: R(xml2) = 1.3.2 R-xml2 = 1.3.2-6.eln112 R-xml2(aarch-64) = 1.3.2-6.eln112 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.1 R(methods) R-core >= 3.1.0 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.5.2)(64bit) libxml2.so.2(LIBXML2_2.5.8)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.11)(64bit) libxml2.so.2(LIBXML2_2.6.2)(64bit) libxml2.so.2(LIBXML2_2.6.21)(64bit) libxml2.so.2(LIBXML2_2.6.23)(64bit) libxml2.so.2(LIBXML2_2.6.8)(64bit) rtld(GNU_HASH) Suggests: R(curl) R(httr) R(knitr) R(magrittr) R(mockery) R(rmarkdown) R(testthat) >= 2.1.0 Processing files: R-xml2-devel-1.3.2-6.eln112.aarch64 Provides: R-xml2-devel = 1.3.2-6.eln112 R-xml2-devel(aarch-64) = 1.3.2-6.eln112 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-xml2-debugsource-1.3.2-6.eln112.aarch64 Provides: R-xml2-debugsource = 1.3.2-6.eln112 R-xml2-debugsource(aarch-64) = 1.3.2-6.eln112 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-xml2-debuginfo-1.3.2-6.eln112.aarch64 Provides: R-xml2-debuginfo = 1.3.2-6.eln112 R-xml2-debuginfo(aarch-64) = 1.3.2-6.eln112 debuginfo(build-id) = 9d2fd4c92cb4b51fae715316147e0a274da00c1d Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-xml2-debugsource(aarch-64) = 1.3.2-6.eln112 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64 Wrote: /builddir/build/RPMS/R-xml2-devel-1.3.2-6.eln112.aarch64.rpm Wrote: /builddir/build/RPMS/R-xml2-debugsource-1.3.2-6.eln112.aarch64.rpm Wrote: /builddir/build/RPMS/R-xml2-1.3.2-6.eln112.aarch64.rpm Wrote: /builddir/build/RPMS/R-xml2-debuginfo-1.3.2-6.eln112.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.W83CNK + umask 022 + cd /builddir/build/BUILD + cd xml2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-xml2-1.3.2-6.eln112.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0