Mock Version: 1.4.13 Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/R-unix.spec'], chrootPath='/var/lib/mock/f31-build-15351868-1102308/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/R-unix.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: s390x Building for target s390x Wrote: /builddir/build/SRPMS/R-unix-1.5-1.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/R-unix.spec'], chrootPath='/var/lib/mock/f31-build-15351868-1102308/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/R-unix.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: s390x Building for target s390x Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.LJm95S + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf unix + /usr/bin/mkdir -p unix + cd unix + /usr/bin/gzip -dc /builddir/build/SOURCES/unix_1.5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.sG1vxE + umask 022 + cd /builddir/build/BUILD + cd unix + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.7lyqOp + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x + cd unix + mkdir -p /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x/usr/lib64/R/library unix BUILDSTDERR: * installing *source* package 'unix' ... BUILDSTDERR: ** package 'unix' successfully unpacked and MD5 sums checked Building without AppArmor (Linux) BUILDSTDERR: ** libs rm -f unix.so chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c chroot.c -o chroot.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c fork.c -o fork.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c process.c -o process.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c register.c -o register.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c rlimit.c -o rlimit.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c userinfo.c -o userinfo.o gcc -m64 -I"/usr/include/R" -DNDEBUG -DSYS_BUILD_SAFE -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -o util.o gcc -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o unix.so chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x/usr/lib64/R/library/unix/libs BUILDSTDERR: ** R BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'unix' BUILDSTDERR: finding HTML links ... done chroot html config html eval_fork html Rd warning: /builddir/build/BUILD/unix/unix/man/eval_fork.Rd:33: file link 'setuid' in package 'unix' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/unix/unix/man/eval_fork.Rd:35: file link 'setgid' in package 'unix' does not exist and so has been treated as a topic process html Rd warning: /builddir/build/BUILD/unix/unix/man/process.Rd:62: file link 'SIGTERM' in package 'tools' does not exist and so has been treated as a topic rlimit html userinfo html BUILDSTDERR: ** building package indices BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (unix) + test -d unix/src + cd unix/src + rm -f chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o unix.so + rm -f /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 1.5-1.fc31 --unique-debug-suffix -1.5-1.fc31.s390x --unique-debug-src-base R-unix-1.5-1.fc31.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/unix explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x/usr/lib64/R/library/unix/libs/unix.so extracting debug info from /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x/usr/lib64/R/library/unix/libs/unix.so /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 44 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.u5FU8M + umask 022 + cd /builddir/build/BUILD + cd unix + /usr/bin/R CMD check unix * using log directory '/builddir/build/BUILD/unix/unix.Rcheck' * using R version 3.5.2 (2018-12-20) * using platform: s390x-ibm-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'unix/DESCRIPTION' ... OK * this is package 'unix' version '1.5' * checking package namespace information ... OK BUILDSTDERR: * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: BUILDSTDERR: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/bioc/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/annotation/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/data/annotation/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/experiment/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'unix' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... NOTE Package has both 'src/Makevars.in' and 'src/Makevars'. Installation with --no-configure' is unlikely to work. If you intended 'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win' otherwise remove it. If 'configure' created 'src/Makevars', you need a 'cleanup' script. * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... BUILDSTDERR: Running 'testthat.R' OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE BUILDSTDERR: See BUILDSTDERR: '/builddir/build/BUILD/unix/unix.Rcheck/00check.log' BUILDSTDERR: for details. + exit 0 Processing files: R-unix-1.5-1.fc31.s390x Provides: R-unix = 1.5-1.fc31 R-unix(s390-64) = 1.5-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.4)(64bit) rtld(GNU_HASH) Processing files: R-unix-debugsource-1.5-1.fc31.s390x Provides: R-unix-debugsource = 1.5-1.fc31 R-unix-debugsource(s390-64) = 1.5-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-unix-debuginfo-1.5-1.fc31.s390x Provides: R-unix-debuginfo = 1.5-1.fc31 R-unix-debuginfo(s390-64) = 1.5-1.fc31 debuginfo(build-id) = ee618bf968ea4e39121a240bbdfccdcbaea80854 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-unix-debugsource(s390-64) = 1.5-1.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x Wrote: /builddir/build/RPMS/R-unix-1.5-1.fc31.s390x.rpm Wrote: /builddir/build/RPMS/R-unix-debugsource-1.5-1.fc31.s390x.rpm Wrote: /builddir/build/RPMS/R-unix-debuginfo-1.5-1.fc31.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.rg3hMI + umask 022 + cd /builddir/build/BUILD + cd unix + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-unix-1.5-1.fc31.s390x + exit 0 Child return code was: 0