Mock Version: 1.4.19 Mock Version: 1.4.19 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-stringdist.spec'], chrootPath='/var/lib/mock/f32-build-17825384-1282579/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-stringdist.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1571097600 Wrote: /builddir/build/SRPMS/R-stringdist-0.9.5.3-1.fc32.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-stringdist.spec'], chrootPath='/var/lib/mock/f32-build-17825384-1282579/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-stringdist.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1571097600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zyt543 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf stringdist + /usr/bin/mkdir -p stringdist + cd stringdist + /usr/bin/gzip -dc /builddir/build/SOURCES/stringdist_0.9.5.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zKMlQ2 + umask 022 + cd /builddir/build/BUILD + cd stringdist + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.qwSiw4 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64 ++ dirname /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64 + cd stringdist + mkdir -p /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library stringdist * installing *source* package 'stringdist' ... ** package 'stringdist' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_register_native.c -o R_register_native.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rstringdist.c -o Rstringdist.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dl.c -o dl.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hamming.c -o hamming.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c jaro.c -o jaro.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lcs.c -o lcs.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lv.c -o lv.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c osa.c -o osa.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgram.c -o qgram.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c soundex.c -o soundex.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stringdist.c -o stringdist.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c utf8ToInt.c -o utf8ToInt.o gcc -I"/usr/include/R" -DNDEBUG -I../inst/include -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o stringdist.so R_register_native.o Rstringdist.o dl.o hamming.o jaro.o lcs.o lv.o osa.o qgram.o soundex.o stringdist.o utf8ToInt.o utils.o -fopenmp -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library/00LOCK-stringdist/00new/stringdist/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'stringdist' finding HTML links ... done amatch html phonetic html printable_ascii html qgrams html seq_amatch html seq_dist html seq_qgrams html seq_sim html stringdist-api html stringdist-encoding html stringdist-metrics html stringdist-package html stringdist-parallelization html stringdist html stringsim html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringdist) + test -d stringdist/src + cd stringdist/src + rm -f R_register_native.o Rstringdist.o dl.o hamming.o jaro.o lcs.o lv.o osa.o qgram.o soundex.o stringdist.o utf8ToInt.o utils.o stringdist.so + rm -f /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library/R.css + rm /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library/stringdist/include/Doxyfile + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 0.9.5.3-1.fc32 --unique-debug-suffix -0.9.5.3-1.fc32.aarch64 --unique-debug-src-base R-stringdist-0.9.5.3-1.fc32.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/stringdist explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library/stringdist/libs/stringdist.so extracting debug info from /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64/usr/lib64/R/library/stringdist/libs/stringdist.so original debug info size: 196kB, size after compression: 172kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 128 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.GyWA65 + umask 022 + cd /builddir/build/BUILD + cd stringdist + /usr/bin/R CMD check stringdist * using log directory '/builddir/build/BUILD/stringdist/stringdist.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: aarch64-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'stringdist/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'stringdist' version '0.9.5.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'stringdist' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... WARNING Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") : OS reports request to set locale to "en_US.UTF-8" cannot be honored * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... WARNING checking a package with encoding 'UTF-8' in an ASCII locale * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'RJournal_6_111-122-2014.Rnw'using 'UTF-8'... OK 'stringdist_C-Cpp_api.Rnw'using 'UTF-8'... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs See '/builddir/build/BUILD/stringdist/stringdist.Rcheck/00check.log' for details. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-stringdist-0.9.5.3-1.fc32.aarch64 Provides: R(stringdist) = 0.9.5.3 R-stringdist = 0.9.5.3-1.fc32 R-stringdist(aarch-64) = 0.9.5.3-1.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(parallel) R-core >= 2.15.3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) rtld(GNU_HASH) Suggests: R(tinytest) Processing files: R-stringdist-devel-0.9.5.3-1.fc32.aarch64 Provides: R-stringdist-devel = 0.9.5.3-1.fc32 R-stringdist-devel(aarch-64) = 0.9.5.3-1.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-stringdist-debugsource-0.9.5.3-1.fc32.aarch64 Provides: R-stringdist-debugsource = 0.9.5.3-1.fc32 R-stringdist-debugsource(aarch-64) = 0.9.5.3-1.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-stringdist-debuginfo-0.9.5.3-1.fc32.aarch64 Provides: R-stringdist-debuginfo = 0.9.5.3-1.fc32 R-stringdist-debuginfo(aarch-64) = 0.9.5.3-1.fc32 debuginfo(build-id) = c2259da5b38ca262ee93f9cadd3f82ad846ae73f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-stringdist-debugsource(aarch-64) = 0.9.5.3-1.fc32 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64 Wrote: /builddir/build/RPMS/R-stringdist-devel-0.9.5.3-1.fc32.aarch64.rpm Wrote: /builddir/build/RPMS/R-stringdist-debugsource-0.9.5.3-1.fc32.aarch64.rpm Wrote: /builddir/build/RPMS/R-stringdist-debuginfo-0.9.5.3-1.fc32.aarch64.rpm Wrote: /builddir/build/RPMS/R-stringdist-0.9.5.3-1.fc32.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.bmMYk5 + umask 022 + cd /builddir/build/BUILD + cd stringdist + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-stringdist-0.9.5.3-1.fc32.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0