Mock Version: 2.6
Mock Version: 2.6
Mock Version: 2.6
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-statnet.common.spec'], chrootPath='/var/lib/mock/f32-build-23644951-2311754/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff88e83a30>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-statnet.common.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1603670400
Wrote: /builddir/build/SRPMS/R-statnet.common-4.4.1-1.fc32.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-statnet.common.spec'], chrootPath='/var/lib/mock/f32-build-23644951-2311754/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff88e83a30>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-statnet.common.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1603670400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZJPFZG
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf statnet.common
+ /usr/bin/mkdir -p statnet.common
+ cd statnet.common
+ /usr/bin/gzip -dc /builddir/build/SOURCES/statnet.common_4.4.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i /covr/d statnet.common/DESCRIPTION
+ rm statnet.common/NEWS.md
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nXXRuI
+ umask 022
+ cd /builddir/build/BUILD
+ cd statnet.common
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5yNgCH
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64
++ dirname /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64
+ cd statnet.common
+ mkdir -p /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64/usr/lib64/R/library statnet.common
* installing *source* package 'statnet.common' ...
file 'NEWS.md' is missing
file 'DESCRIPTION' has the wrong MD5 checksum
** using staged installation
** libs
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c init.c -o init.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c logspace_utils.c -o logspace_utils.o
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o statnet.common.so init.o logspace_utils.o -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64/usr/lib64/R/library/00LOCK-statnet.common/00new/statnet.common/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'statnet.common'
    finding HTML links ... done
    ERRVL                                   html  
Rd warning: /builddir/build/BUILD/statnet.common/statnet.common/man/ERRVL.Rd:48: file link 'inherits' in package 'base' does not exist and so has been treated as a topic
    NVL                                     html  
Rd warning: /builddir/build/BUILD/statnet.common/statnet.common/man/NVL.Rd:114: file link 'is.null' in package 'base' does not exist and so has been treated as a topic
Rd warning: /builddir/build/BUILD/statnet.common/statnet.common/man/NVL.Rd:114: file link 'if' in package 'base' does not exist and so has been treated as a topic
    all_identical                           html  
    check.control.class                     html  
    compress_rows                           html  
    compress_rows.data.frame                html  
    control.list.accessor                   html  
Rd warning: /builddir/build/BUILD/statnet.common/statnet.common/man/control.list.accessor.Rd:24: file link 'getElement' in package 'base' does not exist and so has been treated as a topic
Rd warning: /builddir/build/BUILD/statnet.common/statnet.common/man/control.list.accessor.Rd:24: file link '$' in package 'base' does not exist and so has been treated as a topic
    control.remap                           html  
    deInf                                   html  
    deprecation-utilities                   html  
    despace                                 html  
    diff.control.list                       html  
    forkTimeout                             html  
    formula.utilities                       html  
    logspace.utils                          html  
    mcmc-utilities                          html  
    finding level-2 HTML links ... done
    message_print                           html  
    once                                    html  
    opttest                                 html  
    paste.and                               html  
    persistEval                             html  
    print.control.list                      html  
    rle-reexport                            html  
    set.control.class                       html  
    sort.data.frame                         html  
    split.array                             html  
    statnet.cite                            html  
    statnetStartupMessage                   html  
    sweep_cols.matrix                       html  
    trim_env                                html  
    ult                                     html  
    unwhich                                 html  
    vector.namesmatch                       html  
    wmatrix                                 html  
    wmatrix_weights                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (statnet.common)
+ test -d statnet.common/src
+ cd statnet.common/src
+ rm -f init.o logspace_utils.o statnet.common.so
+ rm -f /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64/usr/lib64/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j5 --strict-build-id -m -i --build-id-seed 4.4.1-1.fc32 --unique-debug-suffix -4.4.1-1.fc32.aarch64 --unique-debug-src-base R-statnet.common-4.4.1-1.fc32.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/statnet.common
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64/usr/lib64/R/library/statnet.common/libs/statnet.common.so
extracting debug info from /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64/usr/lib64/R/library/statnet.common/libs/statnet.common.so
original debug info size: 68kB, size after compression: 72kB
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
14 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.SOCTFI
+ umask 022
+ cd /builddir/build/BUILD
+ cd statnet.common
+ /usr/bin/R CMD check statnet.common
* using log directory '/builddir/build/BUILD/statnet.common/statnet.common.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: aarch64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'statnet.common/DESCRIPTION' ... OK
* this is package 'statnet.common' version '4.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.11/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.11/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.11/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'statnet.common' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
  OS reports request to set locale to "en_US.UTF-8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... WARNING
Error: package or namespace load failed for 'statnet.common' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'coda'
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs
See
  '/builddir/build/BUILD/statnet.common/statnet.common.Rcheck/00check.log'
for details.
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-statnet.common-4.4.1-1.fc32.aarch64
Provides: R(statnet.common) = 4.4.1 R-statnet.common = 4.4.1-1.fc32 R-statnet.common(aarch-64) = 4.4.1-1.fc32
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(ABI) = 4.0 R(coda) R(methods) R(parallel) R(rle) R(tools) R(utils) R-core >= 3.5 libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) rtld(GNU_HASH)
Processing files: R-statnet.common-debugsource-4.4.1-1.fc32.aarch64
Provides: R-statnet.common-debugsource = 4.4.1-1.fc32 R-statnet.common-debugsource(aarch-64) = 4.4.1-1.fc32
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-statnet.common-debuginfo-4.4.1-1.fc32.aarch64
Provides: R-statnet.common-debuginfo = 4.4.1-1.fc32 R-statnet.common-debuginfo(aarch-64) = 4.4.1-1.fc32 debuginfo(build-id) = f161c3ed344ca920dd2205780dfebed7867a2123
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-statnet.common-debugsource(aarch-64) = 4.4.1-1.fc32
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64
Wrote: /builddir/build/RPMS/R-statnet.common-debugsource-4.4.1-1.fc32.aarch64.rpm
Wrote: /builddir/build/RPMS/R-statnet.common-debuginfo-4.4.1-1.fc32.aarch64.rpm
Wrote: /builddir/build/RPMS/R-statnet.common-4.4.1-1.fc32.aarch64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.YpBhKG
+ umask 022
+ cd /builddir/build/BUILD
+ cd statnet.common
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-statnet.common-4.4.1-1.fc32.aarch64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0