Mock Version: 1.4.16 Mock Version: 1.4.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-rmarkdown.spec'], chrootPath='/var/lib/mock/f32-build-17267524-1241112/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-rmarkdown.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1566000000 Wrote: /builddir/build/SRPMS/R-rmarkdown-1.14-1.fc32.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-rmarkdown.spec'], chrootPath='/var/lib/mock/f32-build-17267524-1241112/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-rmarkdown.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1566000000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.qWYDGm + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rmarkdown + /usr/bin/mkdir -p rmarkdown + cd rmarkdown + /usr/bin/gzip -dc /builddir/build/SOURCES/rmarkdown_1.14.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + cd /builddir/build/BUILD + cd rmarkdown/rmarkdown + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git add . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'R-rmarkdown-1.14 base' + /usr/bin/cat /builddir/build/SOURCES/0001-Remove-unused-minified-ioslides-files.patch + /usr/bin/git apply --index - + /usr/bin/git commit -q -m 0001-Remove-unused-minified-ioslides-files.patch --author 'rpm-build ' + /usr/bin/git apply --index - + /usr/bin/cat /builddir/build/SOURCES/0002-Unbundle-fonts-in-ioslides.patch + /usr/bin/git commit -q -m 0002-Unbundle-fonts-in-ioslides.patch --author 'rpm-build ' + /usr/bin/git apply --index - + /usr/bin/cat /builddir/build/SOURCES/0004-Unbundle-jquery.patch + /usr/bin/git commit -q -m 0004-Unbundle-jquery.patch --author 'rpm-build ' + /usr/bin/git apply --index - + /usr/bin/cat /builddir/build/SOURCES/0005-Unbundle-highlight.js.patch + /usr/bin/git commit -q -m 0005-Unbundle-highlight.js.patch --author 'rpm-build ' + /usr/bin/cat /builddir/build/SOURCES/0006-Add-original-non-minified-Bootswatch-themes.patch + /usr/bin/git apply --index - + /usr/bin/git commit -q -m 0006-Add-original-non-minified-Bootswatch-themes.patch --author 'rpm-build ' + /usr/bin/git apply --index - + /usr/bin/cat /builddir/build/SOURCES/0007-Unbundle-fonts-from-bootstrap.patch + /usr/bin/git commit -q -m 0007-Unbundle-fonts-from-bootstrap.patch --author 'rpm-build ' + /usr/bin/git apply --index - + /usr/bin/cat /builddir/build/SOURCES/0008-Add-source-for-code-prettify.patch BUILDSTDERR: :269: trailing whitespace. BUILDSTDERR: var C_KEYWORDS = [FLOW_CONTROL_KEYWORDS,"auto,case,char,const,default," + BUILDSTDERR: :386: trailing whitespace. BUILDSTDERR: BUILDSTDERR: :387: trailing whitespace. BUILDSTDERR: BUILDSTDERR: :408: trailing whitespace. BUILDSTDERR: BUILDSTDERR: :425: trailing whitespace. BUILDSTDERR: BUILDSTDERR: warning: squelched 46 whitespace errors BUILDSTDERR: warning: 51 lines add whitespace errors. + /usr/bin/git commit -q -m 0008-Add-source-for-code-prettify.patch --author 'rpm-build ' + /usr/bin/git apply --index - + /usr/bin/cat /builddir/build/SOURCES/0009-Skip-shiny-tests.patch + /usr/bin/git commit -q -m 0009-Skip-shiny-tests.patch --author 'rpm-build ' + rm inst/rmd/h/bootstrap/css/fonts/Ubuntu.ttf + chmod -x inst/rmd/h/ionicons/LICENSE inst/rmd/h/ionicons/css/ionicons.css inst/rmd/h/ionicons/css/ionicons.min.css inst/rmd/h/ionicons/fonts/ionicons.ttf + chmod -x inst/rmd/ioslides/ioslides-13.5.1/js/hammer.js + cd /builddir/build/BUILD + cd rmarkdown + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ORS2ql + umask 022 + cd /builddir/build/BUILD + cd rmarkdown + pushd rmarkdown/inst/rmd/h/bootstrap/css/ + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin bootstrap.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin bootstrap-theme.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin cerulean.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin cosmo.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin darkly.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin flatly.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin journal.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin lumen.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin paper.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin readable.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin sandstone.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin simplex.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin spacelab.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin united.css + for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti + cssmin yeti.css + popd + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ~/build/BUILD/rmarkdown/rmarkdown/inst/rmd/h/bootstrap/css ~/build/BUILD/rmarkdown ~/build/BUILD/rmarkdown Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.dvaKgm + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch + cd rmarkdown + mkdir -p /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch/usr/share/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch/usr/share/R/library rmarkdown BUILDSTDERR: * installing *source* package 'rmarkdown' ... BUILDSTDERR: ** using staged installation BUILDSTDERR: ** R BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices BUILDSTDERR: finding HTML links ... done BUILDSTDERR: ** building package indices BUILDSTDERR: ** installing vignettes BUILDSTDERR: ** testing if installed package can be loaded from temporary location BUILDSTDERR: ** testing if installed package can be loaded from final location BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path BUILDSTDERR: * DONE (rmarkdown) + test -d rmarkdown/src + rm -f /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch/usr/share/R/library/R.css + pushd /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch/usr/share/R/library/rmarkdown + rm rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Italic.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Regular.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Semibold.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-SemiboldItalic.ttf + for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic + ln -s /usr/share/fonts/open-sans/OpenSans-Regular.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Regular.ttf + for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic + ln -s /usr/share/fonts/open-sans/OpenSans-Italic.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Italic.ttf + for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic + ln -s /usr/share/fonts/open-sans/OpenSans-Semibold.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Semibold.ttf + for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic + ln -s /usr/share/fonts/open-sans/OpenSans-SemiboldItalic.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-SemiboldItalic.ttf + ln -sf /usr/share/fonts/adobe-source-code-pro/SourceCodePro-Regular.otf rmd/ioslides/ioslides-13.5.1/fonts/SourceCodePro-Regular.otf + ln -sf /usr/share/fonts/lato/Lato-Regular.ttf rmd/h/bootstrap/css/fonts/Lato.ttf + ln -sf /usr/share/fonts/lato/Lato-Bold.ttf rmd/h/bootstrap/css/fonts/LatoBold.ttf + ln -sf /usr/share/fonts/lato/Lato-Italic.ttf rmd/h/bootstrap/css/fonts/LatoItalic.ttf + ln -sf /usr/share/fonts/open-sans/OpenSans-Regular.ttf rmd/h/bootstrap/css/fonts/OpenSans.ttf + for f in Bold BoldItalic Italic Light LightItalic + ln -sf /usr/share/fonts/open-sans/OpenSans-Bold.ttf rmd/h/bootstrap/css/fonts/OpenSansBold.ttf + for f in Bold BoldItalic Italic Light LightItalic + ln -sf /usr/share/fonts/open-sans/OpenSans-BoldItalic.ttf rmd/h/bootstrap/css/fonts/OpenSansBoldItalic.ttf + for f in Bold BoldItalic Italic Light LightItalic + ln -sf /usr/share/fonts/open-sans/OpenSans-Italic.ttf rmd/h/bootstrap/css/fonts/OpenSansItalic.ttf + for f in Bold BoldItalic Italic Light LightItalic + ln -sf /usr/share/fonts/open-sans/OpenSans-Light.ttf rmd/h/bootstrap/css/fonts/OpenSansLight.ttf + for f in Bold BoldItalic Italic Light LightItalic + ln -sf /usr/share/fonts/open-sans/OpenSans-LightItalic.ttf rmd/h/bootstrap/css/fonts/OpenSansLightItalic.ttf + for f in Regular Bold + ln -sf /usr/share/fonts/impallari-raleway/Raleway-Regular.otf rmd/h/bootstrap/css/fonts/Raleway-Regular.otf + for f in Regular Bold + ln -sf /usr/share/fonts/impallari-raleway/Raleway-Bold.otf rmd/h/bootstrap/css/fonts/Raleway-Bold.otf + ln -sf /usr/share/fonts/google-roboto/Roboto-Regular.ttf rmd/h/bootstrap/css/fonts/Roboto.ttf + for f in Light Medium Bold + ln -sf /usr/share/fonts/google-roboto/Roboto-Light.ttf rmd/h/bootstrap/css/fonts/RobotoLight.ttf + for f in Light Medium Bold + ln -sf /usr/share/fonts/google-roboto/Roboto-Medium.ttf rmd/h/bootstrap/css/fonts/RobotoMedium.ttf + for f in Light Medium Bold + ln -sf /usr/share/fonts/google-roboto/Roboto-Bold.ttf rmd/h/bootstrap/css/fonts/RobotoBold.ttf + for f in Bold It Light Regular + ln -sf /usr/share/fonts/source-sans-pro/SourceSansPro-Bold.otf rmd/h/bootstrap/css/fonts/SourceSansPro-Bold.otf + for f in Bold It Light Regular + ln -sf /usr/share/fonts/source-sans-pro/SourceSansPro-It.otf rmd/h/bootstrap/css/fonts/SourceSansPro-It.otf + for f in Bold It Light Regular + ln -sf /usr/share/fonts/source-sans-pro/SourceSansPro-Light.otf rmd/h/bootstrap/css/fonts/SourceSansPro-Light.otf + for f in Bold It Light Regular + ln -sf /usr/share/fonts/source-sans-pro/SourceSansPro-Regular.otf rmd/h/bootstrap/css/fonts/SourceSansPro-Regular.otf + ln -sf /usr/share/fonts/glyphicons-halflings/glyphicons-halflings-regular.ttf rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf + popd + /usr/lib/rpm/find-debuginfo.sh -j12 --strict-build-id -m -i --build-id-seed 1.14-1.fc32 --unique-debug-suffix -1.14-1.fc32.noarch --unique-debug-src-base R-rmarkdown-1.14-1.fc32.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rmarkdown + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs files 'inst/rmd/h/bootstrap/css/fonts/Raleway.ttf', 'inst/rmd/h/bootstrap/css/fonts/RalewayBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansPro.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansProBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansProItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansProLight.ttf', 'inst/rmd/h/bootstrap/css/fonts/Ubuntu.ttf', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.eot', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.svg', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.woff', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.woff2', 'inst/rmd/h/highlightjs/default.css', 'inst/rmd/h/highlightjs/highlight.js', 'inst/rmd/h/highlightjs/textmate.css', 'inst/rmd/h/jquery-AUTHORS.txt', 'inst/rmd/h/jquery/jquery.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSans.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSansItalic.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSansSemibold.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSansSemiboldItalic.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/SourceCodePro.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/js/order.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/polyfills/classList.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/polyfills/dataset.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/polyfills/history.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/require-1.0.8.min.js' are missing files 'R/html_dependencies.R', 'inst/rmd/h/bootstrap/css/bootstrap-theme.min.css', 'inst/rmd/h/bootstrap/css/bootstrap.css', 'inst/rmd/h/bootstrap/css/bootstrap.min.css', 'inst/rmd/h/bootstrap/css/cerulean.min.css', 'inst/rmd/h/bootstrap/css/cosmo.min.css', 'inst/rmd/h/bootstrap/css/darkly.min.css', 'inst/rmd/h/bootstrap/css/flatly.min.css', 'inst/rmd/h/bootstrap/css/fonts/Lato.ttf', 'inst/rmd/h/bootstrap/css/fonts/LatoBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/LatoItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSans.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansBoldItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansLight.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansLightItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/Roboto.ttf', 'inst/rmd/h/bootstrap/css/fonts/RobotoBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/RobotoLight.ttf', 'inst/rmd/h/bootstrap/css/fonts/RobotoMedium.ttf', 'inst/rmd/h/bootstrap/css/journal.min.css', 'inst/rmd/h/bootstrap/css/lumen.min.css', 'inst/rmd/h/bootstrap/css/paper.min.css', 'inst/rmd/h/bootstrap/css/readable.min.css', 'inst/rmd/h/bootstrap/css/sandstone.min.css', 'inst/rmd/h/bootstrap/css/simplex.min.css', 'inst/rmd/h/bootstrap/css/spacelab.min.css', 'inst/rmd/h/bootstrap/css/united.min.css', 'inst/rmd/h/bootstrap/css/yeti.min.css', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/fonts.css', 'tests/testthat/test-params.R' have the wrong MD5 checksums converting help for package 'rmarkdown' all_output_formats html beamer_presentation html compile_notebook html convert_ipynb html default_output_format html draft html find_external_resources html github_document html html-dependencies html html_document html html_document_base html html_fragment html html_notebook html html_notebook_metadata html html_notebook_output html html_vignette html includes html ioslides_presentation html knit_params_ask html knitr_options html knitr_options_html html knitr_options_pdf html latex-dependencies html latex_dependency html md_document html metadata html navbar_html html odt_document html output_format html output_metadata html paged_table html pandoc_args html pandoc_available html pandoc_citeproc_convert html pandoc_convert html pandoc_exec html pandoc_options html pandoc_path_arg html pandoc_self_contained_html html pandoc_template html parse_html_notebook html pdf_document html powerpoint_presentation html relative_to html render html render_delayed html render_site html render_supporting_files html resolve_output_format html rmarkdown-package html rmarkdown_format html rmd_metadata html rtf_document html run html shiny_prerendered_chunk html shiny_prerendered_clean html shiny_prerendered_server_start_code html site_resources html slidy_presentation html tufte_handout html word_document html yaml_front_matter html ~/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch/usr/share/R/library/rmarkdown ~/build/BUILD/rmarkdown ~/build/BUILD/rmarkdown Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Tul4ij + umask 022 + cd /builddir/build/BUILD + cd rmarkdown + _R_CHECK_FORCE_SUGGESTS_=0 + /usr/bin/R CMD check rmarkdown BUILDSTDERR: Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: BUILDSTDERR: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES' * using log directory '/builddir/build/BUILD/rmarkdown/rmarkdown.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: powerpc64le-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'rmarkdown/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'rmarkdown' version '1.14' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Packages suggested but not available for checking: 'shiny', 'tufte', 'dygraphs', 'tibble', 'pkgdown' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... WARNING Found the following executable files: .git/objects/00/3d628a7db653ec5df8ec6652579ff3d64fe648 .git/objects/00/af79c3f9e02894591fbde1f11663916ae0d464 .git/objects/01/0c4a9f740de46fba09b120c87745f81e379219 .git/objects/01/7fa7ec495604c0b370cc8ff60976431893e0d7 .git/objects/02/fdd43cae08633d159764044999a14946344fb6 .git/objects/03/57a35b637e11c4e494bc7bf3de367752900edb .git/objects/03/7d8cb785924e5e31bf5f3ac320d226d796cabb .git/objects/03/a2730b5f76c84224381beef0ab9c9007f227ae .git/objects/03/ae515d67b90a6072744ff223175b77ebf336a4 .git/objects/04/af76f8d362f1bd76b7d5fda8f410d6eee34461 .git/objects/04/d086dfabf6503ffa65c1abdf6a8fcd6a723342 .git/objects/04/dfa96e264d1e3443dcd571e120847f508cc251 .git/objects/04/e13af53ff847df1575a279263d85f3cab92361 .git/objects/04/e50cd79749153fe9eda6d18558beee586b11fd .git/objects/05/bea696668ad9309628e35ad7951359ba46f4f5 .git/objects/06/afaf0003f4b13064096d33a3bff66d10223f57 .git/objects/06/de1237da92da5ab5fa137f078ab6b77fc5ce9f 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See section 'Package structure' in the 'Writing R Extensions' manual. * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'rmarkdown' can be installed ... OK * checking installed package size ... NOTE BUILDSTDERR: installed size is 16. Running 'testrmd.R' BUILDSTDERR: Running 'testthat.R' BUILDSTDERR: See BUILDSTDERR: '/builddir/build/BUILD/rmarkdown/rmarkdown.Rcheck/00check.log' BUILDSTDERR: for details. + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 3Mb sub-directories of 1Mb or more: rmd 15.4Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... WARNING Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") : OS reports request to set locale to "en_US.UTF-8" cannot be honored * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... WARNING Error: package or namespace load failed for 'rmarkdown' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called 'evaluate' Execution halted It looks like this package has a loading problem when not on .libPaths: see the messages for details. * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Unknown package 'shiny' in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... WARNING checking a package with encoding 'UTF-8' in an ASCII locale * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'pandoc.Rmd'using 'UTF-8'... OK 'rmarkdown.Rmd'using 'UTF-8'... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 5 WARNINGs, 3 NOTEs Processing files: R-rmarkdown-1.14-1.fc32.noarch BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/Lato.ttf -> /usr/share/fonts/lato/Lato-Regular.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/LatoBold.ttf -> /usr/share/fonts/lato/Lato-Bold.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/LatoItalic.ttf -> /usr/share/fonts/lato/Lato-Italic.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSans.ttf -> /usr/share/fonts/open-sans/OpenSans-Regular.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansBold.ttf -> /usr/share/fonts/open-sans/OpenSans-Bold.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansBoldItalic.ttf -> /usr/share/fonts/open-sans/OpenSans-BoldItalic.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansItalic.ttf -> /usr/share/fonts/open-sans/OpenSans-Italic.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansLight.ttf -> /usr/share/fonts/open-sans/OpenSans-Light.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansLightItalic.ttf -> /usr/share/fonts/open-sans/OpenSans-LightItalic.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/Raleway-Bold.otf -> /usr/share/fonts/impallari-raleway/Raleway-Bold.otf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/Raleway-Regular.otf -> /usr/share/fonts/impallari-raleway/Raleway-Regular.otf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/Roboto.ttf -> /usr/share/fonts/google-roboto/Roboto-Regular.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/RobotoBold.ttf -> /usr/share/fonts/google-roboto/Roboto-Bold.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/RobotoLight.ttf -> /usr/share/fonts/google-roboto/Roboto-Light.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/RobotoMedium.ttf -> /usr/share/fonts/google-roboto/Roboto-Medium.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/SourceSansPro-Bold.otf -> /usr/share/fonts/source-sans-pro/SourceSansPro-Bold.otf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/SourceSansPro-It.otf -> /usr/share/fonts/source-sans-pro/SourceSansPro-It.otf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/SourceSansPro-Light.otf -> /usr/share/fonts/source-sans-pro/SourceSansPro-Light.otf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/css/fonts/SourceSansPro-Regular.otf -> /usr/share/fonts/source-sans-pro/SourceSansPro-Regular.otf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf -> /usr/share/fonts/glyphicons-halflings/glyphicons-halflings-regular.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Italic.ttf -> /usr/share/fonts/open-sans/OpenSans-Italic.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Regular.ttf -> /usr/share/fonts/open-sans/OpenSans-Regular.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Semibold.ttf -> /usr/share/fonts/open-sans/OpenSans-Semibold.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-SemiboldItalic.ttf -> /usr/share/fonts/open-sans/OpenSans-SemiboldItalic.ttf BUILDSTDERR: warning: absolute symlink: /usr/share/R/library/rmarkdown/rmd/ioslides/ioslides-13.5.1/fonts/SourceCodePro-Regular.otf -> /usr/share/fonts/adobe-source-code-pro/SourceCodePro-Regular.otf Provides: R(rmarkdown) = 1.14 R-rmarkdown = 1.14-1.fc32 bundled(fontawesome-fonts) = 5.1.0 bundled(fontawesome-fonts-web) = 5.1.0 bundled(glyphography-news-cycle-fonts) = 0.4 bundled(ionicons-fonts) = 2.0.1 bundled(js-code-prettify) = 20130304 bundled(js-hammer) = 0.4 bundled(js-ioslides) = 13.5.1 bundled(js-jquery-stickytabs) = 1.2.4 bundled(js-jquery-tocify) = 1.9.1 bundled(js-modernizr) = 2.5.3 bundled(js-slidy) = 2 bundled(xstatic-bootstrap-common) = 3.3.5 bundled(xstatic-jquery-ui-common) = 1.11.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(base64enc) R(evaluate) >= 0.13 R(htmltools) >= 0.3.5 R(jsonlite) R(knitr) >= 1.22 R(methods) R(mime) R(stringr) >= 1.2.0 R(tinytex) >= 0.11 R(tools) R(utils) R(xfun) R(yaml) >= 2.1.19 R-core >= 3.0 Recommends: adobe-source-code-pro-fonts adobe-source-sans-pro-fonts glyphicons-halflings-fonts google-roboto-fonts impallari-raleway-fonts lato-fonts open-sans-fonts Suggests: R(callr) >= 2.0.0 R(digest) R(fs) R(pkgdown) R(shiny) >= 0.11 R(testthat) R(tibble) R(tufte) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch Wrote: /builddir/build/RPMS/R-rmarkdown-1.14-1.fc32.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.De2VAj + umask 022 + cd /builddir/build/BUILD + cd rmarkdown + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-rmarkdown-1.14-1.fc32.noarch + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0