Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R-reticulate.spec'], chrootPath='/var/lib/mock/f32-build-18830481-1330627/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R-reticulate.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1578355200 Wrote: /builddir/build/SRPMS/R-reticulate-1.14-1.fc32.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R-reticulate.spec'], chrootPath='/var/lib/mock/f32-build-18830481-1330627/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R-reticulate.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1578355200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZKHQvT + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf reticulate + /usr/bin/mkdir -p reticulate + cd reticulate + /usr/bin/gzip -dc /builddir/build/SOURCES/reticulate_1.14.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd reticulate ~/build/BUILD/reticulate/reticulate ~/build/BUILD/reticulate + echo 'Patch #1 (0001-Skip-network-tests.patch):' Patch #1 (0001-Skip-network-tests.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file tests/testthat/test-python-source.R + rm -r inst/python/rpytools/__pycache__ + sed -i '/pyc$/d' MD5 + popd ~/build/BUILD/reticulate + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.i4sIgV + umask 022 + cd /builddir/build/BUILD + cd reticulate + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ArXgxT + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 ++ dirname /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 + cd reticulate + mkdir -p /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library reticulate * installing *source* package 'reticulate' ... file 'tests/testthat/test-python-source.R' has the wrong MD5 checksum ** using staged installation ** libs g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c event_loop.cpp -o event_loop.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c libpython.cpp -o libpython.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c output.cpp -o output.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c python.cpp -o python.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c readline.cpp -o readline.o g++ -m32 -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o reticulate.so RcppExports.o event_loop.o libpython.o output.o python.o readline.o -L/usr/lib/R/lib -lR installing to /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/00LOCK-reticulate/00new/reticulate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reticulate' finding HTML links ... done PyClass html array_reshape html as.character.python.builtin.bytes html conda-tools html configure_environment html dict html eng_python html import html install_miniconda html iterate html miniconda_path html miniconda_update html np_array html py html py_available html py_call html py_capture_output html py_config html py_config_error_message html py_del_item html py_discover_config html py_func html py_function_custom_scaffold html py_function_wrapper html py_get_attr html py_get_item html py_has_attr html py_help html py_id html py_install html py_is_null_xptr html py_iterator html py_last_error html py_len html py_list_attributes html py_main_thread_func html py_module_available html py_run html py_save_object html py_set_attr html py_set_item html py_set_seed html py_str html py_suppress_warnings html py_to_r_wrapper html py_unicode html py_versions_windows html r-py-conversion html register_class_filter html register_help_topics html register_module_help_handler html register_suppress_warnings_handler html repl_python html reticulate html source_python html tuple html use_python html virtualenv-tools html with-as-operator html with.python.builtin.object html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reticulate) + test -d reticulate/src + cd reticulate/src + rm -f RcppExports.o event_loop.o libpython.o output.o python.o readline.o reticulate.so + rm -f /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/R.css + [[ /usr/bin/python3 =~ - ]] ++ /usr/bin/python3 -c 'import sys; sys.stdout.write('\''{0.major}{0.minor}'\''.format(sys.version_info))' + python_version=38 + '[' 38 -ge 34 ']' + py3_byte_compile /usr/bin/python3 /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools + python_binary=/usr/bin/python3 + bytecode_compilation_path=/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -s -B -m compileall2 -o 0 -o 1 -s /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 -p / /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools Listing '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/__init__.py'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/call.py'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/generator.py'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/help.py'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/output.py'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/test.py'... Compiling '/builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/python/rpytools/thread.py'... + /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 1.14-1.fc32 --unique-debug-suffix -1.14-1.fc32.i386 --unique-debug-src-base R-reticulate-1.14-1.fc32.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/reticulate explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/libs/reticulate.so extracting debug info from /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386/usr/lib/R/library/reticulate/libs/reticulate.so original debug info size: 4364kB, size after compression: 4048kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 333 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python3 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5v6w7S + umask 022 + cd /builddir/build/BUILD + cd reticulate + /usr/bin/R CMD check reticulate * using log directory '/builddir/build/BUILD/reticulate/reticulate.Rcheck' * using R version 3.6.2 (2019-12-12) * using platform: i686-redhat-linux-gnu (32-bit) * using session charset: ASCII * checking for file 'reticulate/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'reticulate' version '1.14' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.10/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'reticulate' can be installed ... OK * checking installed package size ... NOTE installed size is 6.4Mb sub-directories of 1Mb or more: doc 1.1Mb libs 4.6Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... WARNING Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") : OS reports request to set locale to "en_US.UTF-8" cannot be honored * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'Matrix' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... WARNING File 'reticulate/libs/reticulate.so': Found 'abort', possibly from 'abort' (C) Objects: 'RcppExports.o', 'python.o' Found 'printf', possibly from 'printf' (C) Objects: 'RcppExports.o', 'python.o' Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... WARNING checking a package with encoding 'UTF-8' in an ASCII locale * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'arrays.Rmd'using 'UTF-8'... OK 'calling_python.Rmd'using 'UTF-8'... OK 'package.Rmd'using 'UTF-8'... OK 'python_dependencies.Rmd'using 'UTF-8'... OK 'python_packages.Rmd'using 'UTF-8'... OK 'r_markdown.Rmd'using 'UTF-8'... OK 'versions.Rmd'using 'UTF-8'... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 WARNINGs, 2 NOTEs See '/builddir/build/BUILD/reticulate/reticulate.Rcheck/00check.log' for details. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-reticulate-1.14-1.fc32.i686 Provides: R(reticulate) = 1.14 R-reticulate = 1.14-1.fc32 R-reticulate(x86-32) = 1.14-1.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(Matrix) R(Rcpp) >= 0.12.7 R(graphics) R(jsonlite) R(methods) R(rappdirs) R(utils) R-core >= 3.0 libR.so libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH) Suggests: R(callr) R(knitr) R(rmarkdown) R(testthat) Processing files: R-reticulate-debugsource-1.14-1.fc32.i686 Provides: R-reticulate-debugsource = 1.14-1.fc32 R-reticulate-debugsource(x86-32) = 1.14-1.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-reticulate-debuginfo-1.14-1.fc32.i686 Provides: R-reticulate-debuginfo = 1.14-1.fc32 R-reticulate-debuginfo(x86-32) = 1.14-1.fc32 debuginfo(build-id) = 30eca8da47db3d572bc2013ce381d36c1de8d07a Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-reticulate-debugsource(x86-32) = 1.14-1.fc32 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 Wrote: /builddir/build/RPMS/R-reticulate-debugsource-1.14-1.fc32.i686.rpm Wrote: /builddir/build/RPMS/R-reticulate-1.14-1.fc32.i686.rpm Wrote: /builddir/build/RPMS/R-reticulate-debuginfo-1.14-1.fc32.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.xm0BgT + umask 022 + cd /builddir/build/BUILD + cd reticulate + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-reticulate-1.14-1.fc32.i386 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0