Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/COPASI.spec'], chrootPath='/var/lib/mock/f29-python-12781854-932964/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/COPASI.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False sh: perl: command not found sh: /usr/bin/perl: No such file or directory Building target platforms: ppc64 Building for target ppc64 Wrote: /builddir/build/SRPMS/COPASI-4.23.184-12.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/COPASI.spec'], chrootPath='/var/lib/mock/f29-python-12781854-932964/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/COPASI.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: ppc64 Building for target ppc64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cjiHgL + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf COPASI-Build-184 + /usr/bin/gzip -dc /builddir/build/SOURCES/COPASI-Build-184.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd COPASI-Build-184 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -f license.txt ++ find copasi -type f '(' -name '*.cpp' ')' + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiSE/CopasiSE.cpp.new copasi/CopasiSE/CopasiSE.cpp + touch -r copasi/CopasiSE/CopasiSE.cpp copasi/CopasiSE/CopasiSE.cpp.new + mv copasi/CopasiSE/CopasiSE.cpp.new copasi/CopasiSE/CopasiSE.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CModelVersion.cpp.new copasi/versioning/CModelVersion.cpp + touch -r copasi/versioning/CModelVersion.cpp copasi/versioning/CModelVersion.cpp.new + mv copasi/versioning/CModelVersion.cpp.new copasi/versioning/CModelVersion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/resourcesUI/CQIconResource.cpp.new copasi/resourcesUI/CQIconResource.cpp + touch -r copasi/resourcesUI/CQIconResource.cpp copasi/resourcesUI/CQIconResource.cpp.new + mv copasi/resourcesUI/CQIconResource.cpp.new copasi/resourcesUI/CQIconResource.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiUI/main.cpp.new copasi/CopasiUI/main.cpp + touch -r copasi/CopasiUI/main.cpp copasi/CopasiUI/main.cpp.new + mv copasi/CopasiUI/main.cpp.new copasi/CopasiUI/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp.new copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp + touch -r copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp.new + mv copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp.new copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/ReactionDataChangeCommand.cpp.new copasi/undoFramework/ReactionDataChangeCommand.cpp + touch -r copasi/undoFramework/ReactionDataChangeCommand.cpp copasi/undoFramework/ReactionDataChangeCommand.cpp.new + mv copasi/undoFramework/ReactionDataChangeCommand.cpp.new copasi/undoFramework/ReactionDataChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoReactionData.cpp.new copasi/undoFramework/UndoReactionData.cpp + touch -r copasi/undoFramework/UndoReactionData.cpp copasi/undoFramework/UndoReactionData.cpp.new + mv copasi/undoFramework/UndoReactionData.cpp.new copasi/undoFramework/UndoReactionData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CCopasiUndoCommand.cpp.new copasi/undoFramework/CCopasiUndoCommand.cpp + touch -r copasi/undoFramework/CCopasiUndoCommand.cpp copasi/undoFramework/CCopasiUndoCommand.cpp.new + mv copasi/undoFramework/CCopasiUndoCommand.cpp.new copasi/undoFramework/CCopasiUndoCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoGlobalQuantityData.cpp.new copasi/undoFramework/UndoGlobalQuantityData.cpp + touch -r copasi/undoFramework/UndoGlobalQuantityData.cpp copasi/undoFramework/UndoGlobalQuantityData.cpp.new + mv copasi/undoFramework/UndoGlobalQuantityData.cpp.new copasi/undoFramework/UndoGlobalQuantityData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CreateNewReactionCommand.cpp.new copasi/undoFramework/CreateNewReactionCommand.cpp + touch -r copasi/undoFramework/CreateNewReactionCommand.cpp copasi/undoFramework/CreateNewReactionCommand.cpp.new + mv copasi/undoFramework/CreateNewReactionCommand.cpp.new copasi/undoFramework/CreateNewReactionCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveAllEventRowsCommand.cpp.new copasi/undoFramework/RemoveAllEventRowsCommand.cpp + touch -r copasi/undoFramework/RemoveAllEventRowsCommand.cpp copasi/undoFramework/RemoveAllEventRowsCommand.cpp.new + mv copasi/undoFramework/RemoveAllEventRowsCommand.cpp.new copasi/undoFramework/RemoveAllEventRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveSpeciesRowsCommand.cpp.new copasi/undoFramework/RemoveSpeciesRowsCommand.cpp + touch -r copasi/undoFramework/RemoveSpeciesRowsCommand.cpp copasi/undoFramework/RemoveSpeciesRowsCommand.cpp.new + mv copasi/undoFramework/RemoveSpeciesRowsCommand.cpp.new copasi/undoFramework/RemoveSpeciesRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/EventChangeCommand.cpp.new copasi/undoFramework/EventChangeCommand.cpp + touch -r copasi/undoFramework/EventChangeCommand.cpp copasi/undoFramework/EventChangeCommand.cpp.new + mv copasi/undoFramework/EventChangeCommand.cpp.new copasi/undoFramework/EventChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveAllReactionRowsCommand.cpp.new copasi/undoFramework/RemoveAllReactionRowsCommand.cpp + touch -r copasi/undoFramework/RemoveAllReactionRowsCommand.cpp copasi/undoFramework/RemoveAllReactionRowsCommand.cpp.new + mv copasi/undoFramework/RemoveAllReactionRowsCommand.cpp.new copasi/undoFramework/RemoveAllReactionRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/ReactionChangeCommand.cpp.new copasi/undoFramework/ReactionChangeCommand.cpp + touch -r copasi/undoFramework/ReactionChangeCommand.cpp copasi/undoFramework/ReactionChangeCommand.cpp.new + mv copasi/undoFramework/ReactionChangeCommand.cpp.new copasi/undoFramework/ReactionChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/ChangeNotesCommand.cpp.new copasi/undoFramework/ChangeNotesCommand.cpp + touch -r copasi/undoFramework/ChangeNotesCommand.cpp copasi/undoFramework/ChangeNotesCommand.cpp.new + mv copasi/undoFramework/ChangeNotesCommand.cpp.new copasi/undoFramework/ChangeNotesCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp.new copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp + touch -r copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp.new + mv copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp.new copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/EventDataChangeCommand.cpp.new copasi/undoFramework/EventDataChangeCommand.cpp + touch -r copasi/undoFramework/EventDataChangeCommand.cpp copasi/undoFramework/EventDataChangeCommand.cpp.new + mv copasi/undoFramework/EventDataChangeCommand.cpp.new copasi/undoFramework/EventDataChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/SpeciesTypeChangeCommand.cpp.new copasi/undoFramework/SpeciesTypeChangeCommand.cpp + touch -r copasi/undoFramework/SpeciesTypeChangeCommand.cpp copasi/undoFramework/SpeciesTypeChangeCommand.cpp.new + mv copasi/undoFramework/SpeciesTypeChangeCommand.cpp.new copasi/undoFramework/SpeciesTypeChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveCompartmentRowsCommand.cpp.new copasi/undoFramework/RemoveCompartmentRowsCommand.cpp + touch -r copasi/undoFramework/RemoveCompartmentRowsCommand.cpp copasi/undoFramework/RemoveCompartmentRowsCommand.cpp.new + mv copasi/undoFramework/RemoveCompartmentRowsCommand.cpp.new copasi/undoFramework/RemoveCompartmentRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CompartmentChangeCommand.cpp.new copasi/undoFramework/CompartmentChangeCommand.cpp + touch -r copasi/undoFramework/CompartmentChangeCommand.cpp copasi/undoFramework/CompartmentChangeCommand.cpp.new + mv copasi/undoFramework/CompartmentChangeCommand.cpp.new copasi/undoFramework/CompartmentChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/InsertEventRowsCommand.cpp.new copasi/undoFramework/InsertEventRowsCommand.cpp + touch -r copasi/undoFramework/InsertEventRowsCommand.cpp copasi/undoFramework/InsertEventRowsCommand.cpp.new + mv copasi/undoFramework/InsertEventRowsCommand.cpp.new copasi/undoFramework/InsertEventRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoEventAssignmentData.cpp.new copasi/undoFramework/UndoEventAssignmentData.cpp + touch -r copasi/undoFramework/UndoEventAssignmentData.cpp copasi/undoFramework/UndoEventAssignmentData.cpp.new + mv copasi/undoFramework/UndoEventAssignmentData.cpp.new copasi/undoFramework/UndoEventAssignmentData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/DeleteGlobalQuantityCommand.cpp.new copasi/undoFramework/DeleteGlobalQuantityCommand.cpp + touch -r copasi/undoFramework/DeleteGlobalQuantityCommand.cpp copasi/undoFramework/DeleteGlobalQuantityCommand.cpp.new + mv copasi/undoFramework/DeleteGlobalQuantityCommand.cpp.new copasi/undoFramework/DeleteGlobalQuantityCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/DeleteCompartmentCommand.cpp.new copasi/undoFramework/DeleteCompartmentCommand.cpp + touch -r copasi/undoFramework/DeleteCompartmentCommand.cpp copasi/undoFramework/DeleteCompartmentCommand.cpp.new + mv copasi/undoFramework/DeleteCompartmentCommand.cpp.new copasi/undoFramework/DeleteCompartmentCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/EntityRenameCommand.cpp.new copasi/undoFramework/EntityRenameCommand.cpp + touch -r copasi/undoFramework/EntityRenameCommand.cpp copasi/undoFramework/EntityRenameCommand.cpp.new + mv copasi/undoFramework/EntityRenameCommand.cpp.new copasi/undoFramework/EntityRenameCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveReactionRowsCommand.cpp.new copasi/undoFramework/RemoveReactionRowsCommand.cpp + touch -r copasi/undoFramework/RemoveReactionRowsCommand.cpp copasi/undoFramework/RemoveReactionRowsCommand.cpp.new + mv copasi/undoFramework/RemoveReactionRowsCommand.cpp.new copasi/undoFramework/RemoveReactionRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp.new copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp + touch -r copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp.new + mv copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp.new copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/InsertCompartmentRowsCommand.cpp.new copasi/undoFramework/InsertCompartmentRowsCommand.cpp + touch -r copasi/undoFramework/InsertCompartmentRowsCommand.cpp copasi/undoFramework/InsertCompartmentRowsCommand.cpp.new + mv copasi/undoFramework/InsertCompartmentRowsCommand.cpp.new copasi/undoFramework/InsertCompartmentRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp.new copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp + touch -r copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp.new + mv copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp.new copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/SpeciesChangeCommand.cpp.new copasi/undoFramework/SpeciesChangeCommand.cpp + touch -r copasi/undoFramework/SpeciesChangeCommand.cpp copasi/undoFramework/SpeciesChangeCommand.cpp.new + mv copasi/undoFramework/SpeciesChangeCommand.cpp.new copasi/undoFramework/SpeciesChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp.new copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp + touch -r copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp.new + mv copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp.new copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/DeleteEventCommand.cpp.new copasi/undoFramework/DeleteEventCommand.cpp + touch -r copasi/undoFramework/DeleteEventCommand.cpp copasi/undoFramework/DeleteEventCommand.cpp.new + mv copasi/undoFramework/DeleteEventCommand.cpp.new copasi/undoFramework/DeleteEventCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CreateNewSpeciesCommand.cpp.new copasi/undoFramework/CreateNewSpeciesCommand.cpp + touch -r copasi/undoFramework/CreateNewSpeciesCommand.cpp copasi/undoFramework/CreateNewSpeciesCommand.cpp.new + mv copasi/undoFramework/CreateNewSpeciesCommand.cpp.new copasi/undoFramework/CreateNewSpeciesCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoDependentData.cpp.new copasi/undoFramework/UndoDependentData.cpp + touch -r copasi/undoFramework/UndoDependentData.cpp copasi/undoFramework/UndoDependentData.cpp.new + mv copasi/undoFramework/UndoDependentData.cpp.new copasi/undoFramework/UndoDependentData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp.new copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp + touch -r copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp.new + mv copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp.new copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/GlobalQuantityChangeCommand.cpp.new copasi/undoFramework/GlobalQuantityChangeCommand.cpp + touch -r copasi/undoFramework/GlobalQuantityChangeCommand.cpp copasi/undoFramework/GlobalQuantityChangeCommand.cpp.new + mv copasi/undoFramework/GlobalQuantityChangeCommand.cpp.new copasi/undoFramework/GlobalQuantityChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/DeleteReactionCommand.cpp.new copasi/undoFramework/DeleteReactionCommand.cpp + touch -r copasi/undoFramework/DeleteReactionCommand.cpp copasi/undoFramework/DeleteReactionCommand.cpp.new + mv copasi/undoFramework/DeleteReactionCommand.cpp.new copasi/undoFramework/DeleteReactionCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp.new copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp + touch -r copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp.new + mv copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp.new copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/SpeciesDataChangeCommand.cpp.new copasi/undoFramework/SpeciesDataChangeCommand.cpp + touch -r copasi/undoFramework/SpeciesDataChangeCommand.cpp copasi/undoFramework/SpeciesDataChangeCommand.cpp.new + mv copasi/undoFramework/SpeciesDataChangeCommand.cpp.new copasi/undoFramework/SpeciesDataChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/InsertReactionRowsCommand.cpp.new copasi/undoFramework/InsertReactionRowsCommand.cpp + touch -r copasi/undoFramework/InsertReactionRowsCommand.cpp copasi/undoFramework/InsertReactionRowsCommand.cpp.new + mv copasi/undoFramework/InsertReactionRowsCommand.cpp.new copasi/undoFramework/InsertReactionRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CreateNewCompartmentCommand.cpp.new copasi/undoFramework/CreateNewCompartmentCommand.cpp + touch -r copasi/undoFramework/CreateNewCompartmentCommand.cpp copasi/undoFramework/CreateNewCompartmentCommand.cpp.new + mv copasi/undoFramework/CreateNewCompartmentCommand.cpp.new copasi/undoFramework/CreateNewCompartmentCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp.new copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp + touch -r copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp.new + mv copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp.new copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CompartmentDataChangeCommand.cpp.new copasi/undoFramework/CompartmentDataChangeCommand.cpp + touch -r copasi/undoFramework/CompartmentDataChangeCommand.cpp copasi/undoFramework/CompartmentDataChangeCommand.cpp.new + mv copasi/undoFramework/CompartmentDataChangeCommand.cpp.new copasi/undoFramework/CompartmentDataChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/RemoveEventRowsCommand.cpp.new copasi/undoFramework/RemoveEventRowsCommand.cpp + touch -r copasi/undoFramework/RemoveEventRowsCommand.cpp copasi/undoFramework/RemoveEventRowsCommand.cpp.new + mv copasi/undoFramework/RemoveEventRowsCommand.cpp.new copasi/undoFramework/RemoveEventRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/CreateNewEventCommand.cpp.new copasi/undoFramework/CreateNewEventCommand.cpp + touch -r copasi/undoFramework/CreateNewEventCommand.cpp copasi/undoFramework/CreateNewEventCommand.cpp.new + mv copasi/undoFramework/CreateNewEventCommand.cpp.new copasi/undoFramework/CreateNewEventCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/DeleteSpeciesCommand.cpp.new copasi/undoFramework/DeleteSpeciesCommand.cpp + touch -r copasi/undoFramework/DeleteSpeciesCommand.cpp copasi/undoFramework/DeleteSpeciesCommand.cpp.new + mv copasi/undoFramework/DeleteSpeciesCommand.cpp.new copasi/undoFramework/DeleteSpeciesCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoEventData.cpp.new copasi/undoFramework/UndoEventData.cpp + touch -r copasi/undoFramework/UndoEventData.cpp copasi/undoFramework/UndoEventData.cpp.new + mv copasi/undoFramework/UndoEventData.cpp.new copasi/undoFramework/UndoEventData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoData.cpp.new copasi/undoFramework/UndoData.cpp + touch -r copasi/undoFramework/UndoData.cpp copasi/undoFramework/UndoData.cpp.new + mv copasi/undoFramework/UndoData.cpp.new copasi/undoFramework/UndoData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoSpeciesData.cpp.new copasi/undoFramework/UndoSpeciesData.cpp + touch -r copasi/undoFramework/UndoSpeciesData.cpp copasi/undoFramework/UndoSpeciesData.cpp.new + mv copasi/undoFramework/UndoSpeciesData.cpp.new copasi/undoFramework/UndoSpeciesData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/UndoCompartmentData.cpp.new copasi/undoFramework/UndoCompartmentData.cpp + touch -r copasi/undoFramework/UndoCompartmentData.cpp copasi/undoFramework/UndoCompartmentData.cpp.new + mv copasi/undoFramework/UndoCompartmentData.cpp.new copasi/undoFramework/UndoCompartmentData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/ModelChangeCommand.cpp.new copasi/undoFramework/ModelChangeCommand.cpp + touch -r copasi/undoFramework/ModelChangeCommand.cpp copasi/undoFramework/ModelChangeCommand.cpp.new + mv copasi/undoFramework/ModelChangeCommand.cpp.new copasi/undoFramework/ModelChangeCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/InsertSpeciesRowsCommand.cpp.new copasi/undoFramework/InsertSpeciesRowsCommand.cpp + touch -r copasi/undoFramework/InsertSpeciesRowsCommand.cpp copasi/undoFramework/InsertSpeciesRowsCommand.cpp.new + mv copasi/undoFramework/InsertSpeciesRowsCommand.cpp.new copasi/undoFramework/InsertSpeciesRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp.new copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp + touch -r copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp.new + mv copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp.new copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiDataModel/CDataModel.cpp.new copasi/CopasiDataModel/CDataModel.cpp + touch -r copasi/CopasiDataModel/CDataModel.cpp copasi/CopasiDataModel/CDataModel.cpp.new + mv copasi/CopasiDataModel/CDataModel.cpp.new copasi/CopasiDataModel/CDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiDataModel/CInfo.cpp.new copasi/CopasiDataModel/CInfo.cpp + touch -r copasi/CopasiDataModel/CInfo.cpp copasi/CopasiDataModel/CInfo.cpp.new + mv copasi/CopasiDataModel/CInfo.cpp.new copasi/CopasiDataModel/CInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/HistoWidget.cpp.new copasi/plotUI/HistoWidget.cpp + touch -r copasi/plotUI/HistoWidget.cpp copasi/plotUI/HistoWidget.cpp.new + mv copasi/plotUI/HistoWidget.cpp.new copasi/plotUI/HistoWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotColors.cpp.new copasi/plotUI/CQPlotColors.cpp + touch -r copasi/plotUI/CQPlotColors.cpp copasi/plotUI/CQPlotColors.cpp.new + mv copasi/plotUI/CQPlotColors.cpp.new copasi/plotUI/CQPlotColors.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/COutputHandlerPlot.cpp.new copasi/plotUI/COutputHandlerPlot.cpp + touch -r copasi/plotUI/COutputHandlerPlot.cpp copasi/plotUI/COutputHandlerPlot.cpp.new + mv copasi/plotUI/COutputHandlerPlot.cpp.new copasi/plotUI/COutputHandlerPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/curve2dwidget.cpp.new copasi/plotUI/curve2dwidget.cpp + touch -r copasi/plotUI/curve2dwidget.cpp copasi/plotUI/curve2dwidget.cpp.new + mv copasi/plotUI/curve2dwidget.cpp.new copasi/plotUI/curve2dwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/scrollbar.cpp.new copasi/plotUI/scrollbar.cpp + touch -r copasi/plotUI/scrollbar.cpp copasi/plotUI/scrollbar.cpp.new + mv copasi/plotUI/scrollbar.cpp.new copasi/plotUI/scrollbar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/C2DCurveData.cpp.new copasi/plotUI/C2DCurveData.cpp + touch -r copasi/plotUI/C2DCurveData.cpp copasi/plotUI/C2DCurveData.cpp.new + mv copasi/plotUI/C2DCurveData.cpp.new copasi/plotUI/C2DCurveData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CHistoCurveData.cpp.new copasi/plotUI/CHistoCurveData.cpp + touch -r copasi/plotUI/CHistoCurveData.cpp copasi/plotUI/CHistoCurveData.cpp.new + mv copasi/plotUI/CHistoCurveData.cpp.new copasi/plotUI/CHistoCurveData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CSpectorgramData.cpp.new copasi/plotUI/CSpectorgramData.cpp + touch -r copasi/plotUI/CSpectorgramData.cpp copasi/plotUI/CSpectorgramData.cpp.new + mv copasi/plotUI/CSpectorgramData.cpp.new copasi/plotUI/CSpectorgramData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CBandedGraphData.cpp.new copasi/plotUI/CBandedGraphData.cpp + touch -r copasi/plotUI/CBandedGraphData.cpp copasi/plotUI/CBandedGraphData.cpp.new + mv copasi/plotUI/CBandedGraphData.cpp.new copasi/plotUI/CBandedGraphData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/C2DPlotCurve.cpp.new copasi/plotUI/C2DPlotCurve.cpp + touch -r copasi/plotUI/C2DPlotCurve.cpp copasi/plotUI/C2DPlotCurve.cpp.new + mv copasi/plotUI/C2DPlotCurve.cpp.new copasi/plotUI/C2DPlotCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQSpectogramWidget.cpp.new copasi/plotUI/CQSpectogramWidget.cpp + touch -r copasi/plotUI/CQSpectogramWidget.cpp copasi/plotUI/CQSpectogramWidget.cpp.new + mv copasi/plotUI/CQSpectogramWidget.cpp.new copasi/plotUI/CQSpectogramWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CPlotSpectogram.cpp.new copasi/plotUI/CPlotSpectogram.cpp + touch -r copasi/plotUI/CPlotSpectogram.cpp copasi/plotUI/CPlotSpectogram.cpp.new + mv copasi/plotUI/CPlotSpectogram.cpp.new copasi/plotUI/CPlotSpectogram.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CopasiPlot.cpp.new copasi/plotUI/CopasiPlot.cpp + touch -r copasi/plotUI/CopasiPlot.cpp copasi/plotUI/CopasiPlot.cpp.new + mv copasi/plotUI/CopasiPlot.cpp.new copasi/plotUI/CopasiPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/plotwindow.cpp.new copasi/plotUI/plotwindow.cpp + touch -r copasi/plotUI/plotwindow.cpp copasi/plotUI/plotwindow.cpp.new + mv copasi/plotUI/plotwindow.cpp.new copasi/plotUI/plotwindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotSubwidget.cpp.new copasi/plotUI/CQPlotSubwidget.cpp + touch -r copasi/plotUI/CQPlotSubwidget.cpp copasi/plotUI/CQPlotSubwidget.cpp.new + mv copasi/plotUI/CQPlotSubwidget.cpp.new copasi/plotUI/CQPlotSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CLinearColorMap.cpp.new copasi/plotUI/CLinearColorMap.cpp + touch -r copasi/plotUI/CLinearColorMap.cpp copasi/plotUI/CLinearColorMap.cpp.new + mv copasi/plotUI/CLinearColorMap.cpp.new copasi/plotUI/CLinearColorMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/BandedGraphWidget.cpp.new copasi/plotUI/BandedGraphWidget.cpp + touch -r copasi/plotUI/BandedGraphWidget.cpp copasi/plotUI/BandedGraphWidget.cpp.new + mv copasi/plotUI/BandedGraphWidget.cpp.new copasi/plotUI/BandedGraphWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/scrollzoomer.cpp.new copasi/plotUI/scrollzoomer.cpp + touch -r copasi/plotUI/scrollzoomer.cpp copasi/plotUI/scrollzoomer.cpp.new + mv copasi/plotUI/scrollzoomer.cpp.new copasi/plotUI/scrollzoomer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotEditWidget.cpp.new copasi/plotUI/CQPlotEditWidget.cpp + touch -r copasi/plotUI/CQPlotEditWidget.cpp copasi/plotUI/CQPlotEditWidget.cpp.new + mv copasi/plotUI/CQPlotEditWidget.cpp.new copasi/plotUI/CQPlotEditWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/ab.cpp.new copasi/ABiochem/ab.cpp + touch -r copasi/ABiochem/ab.cpp copasi/ABiochem/ab.cpp.new + mv copasi/ABiochem/ab.cpp.new copasi/ABiochem/ab.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/wattstrog.cpp.new copasi/ABiochem/wattstrog.cpp + touch -r copasi/ABiochem/wattstrog.cpp copasi/ABiochem/wattstrog.cpp.new + mv copasi/ABiochem/wattstrog.cpp.new copasi/ABiochem/wattstrog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/abiochem.cpp.new copasi/ABiochem/abiochem.cpp + touch -r copasi/ABiochem/abiochem.cpp copasi/ABiochem/abiochem.cpp.new + mv copasi/ABiochem/abiochem.cpp.new copasi/ABiochem/abiochem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/Erdos.cpp.new copasi/ABiochem/Erdos.cpp + touch -r copasi/ABiochem/Erdos.cpp copasi/ABiochem/Erdos.cpp.new + mv copasi/ABiochem/Erdos.cpp.new copasi/ABiochem/Erdos.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/clo.cpp.new copasi/ABiochem/clo.cpp + touch -r copasi/ABiochem/clo.cpp copasi/ABiochem/clo.cpp.new + mv copasi/ABiochem/clo.cpp.new copasi/ABiochem/clo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/CGene.cpp.new copasi/ABiochem/CGene.cpp + touch -r copasi/ABiochem/CGene.cpp copasi/ABiochem/CGene.cpp.new + mv copasi/ABiochem/CGene.cpp.new copasi/ABiochem/CGene.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/1d.cpp.new copasi/ABiochem/1d.cpp + touch -r copasi/ABiochem/1d.cpp copasi/ABiochem/1d.cpp.new + mv copasi/ABiochem/1d.cpp.new copasi/ABiochem/1d.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathExpression.cpp.new copasi/math/CMathExpression.cpp + touch -r copasi/math/CMathExpression.cpp copasi/math/CMathExpression.cpp.new + mv copasi/math/CMathExpression.cpp.new copasi/math/CMathExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathHistory.cpp.new copasi/math/CMathHistory.cpp + touch -r copasi/math/CMathHistory.cpp copasi/math/CMathHistory.cpp.new + mv copasi/math/CMathHistory.cpp.new copasi/math/CMathHistory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathUpdateSequence.cpp.new copasi/math/CMathUpdateSequence.cpp + touch -r copasi/math/CMathUpdateSequence.cpp copasi/math/CMathUpdateSequence.cpp.new + mv copasi/math/CMathUpdateSequence.cpp.new copasi/math/CMathUpdateSequence.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyGraph.cpp.new copasi/math/CMathDependencyGraph.cpp + touch -r copasi/math/CMathDependencyGraph.cpp copasi/math/CMathDependencyGraph.cpp.new + mv copasi/math/CMathDependencyGraph.cpp.new copasi/math/CMathDependencyGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDelay.cpp.new copasi/math/CMathDelay.cpp + touch -r copasi/math/CMathDelay.cpp copasi/math/CMathDelay.cpp.new + mv copasi/math/CMathDelay.cpp.new copasi/math/CMathDelay.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEnum.cpp.new copasi/math/CMathEnum.cpp + touch -r copasi/math/CMathEnum.cpp copasi/math/CMathEnum.cpp.new + mv copasi/math/CMathEnum.cpp.new copasi/math/CMathEnum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathObject.cpp.new copasi/math/CMathObject.cpp + touch -r copasi/math/CMathObject.cpp copasi/math/CMathObject.cpp.new + mv copasi/math/CMathObject.cpp.new copasi/math/CMathObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathContainer.cpp.new copasi/math/CMathContainer.cpp + touch -r copasi/math/CMathContainer.cpp copasi/math/CMathContainer.cpp.new + mv copasi/math/CMathContainer.cpp.new copasi/math/CMathContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEvent.cpp.new copasi/math/CMathEvent.cpp + touch -r copasi/math/CMathEvent.cpp copasi/math/CMathEvent.cpp.new + mv copasi/math/CMathEvent.cpp.new copasi/math/CMathEvent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyNode.cpp.new copasi/math/CMathDependencyNode.cpp + touch -r copasi/math/CMathDependencyNode.cpp copasi/math/CMathDependencyNode.cpp.new + mv copasi/math/CMathDependencyNode.cpp.new copasi/math/CMathDependencyNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyNodeIterator.cpp.new copasi/math/CMathDependencyNodeIterator.cpp + touch -r copasi/math/CMathDependencyNodeIterator.cpp copasi/math/CMathDependencyNodeIterator.cpp.new + mv copasi/math/CMathDependencyNodeIterator.cpp.new copasi/math/CMathDependencyNodeIterator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEventQueue.cpp.new copasi/math/CMathEventQueue.cpp + touch -r copasi/math/CMathEventQueue.cpp copasi/math/CMathEventQueue.cpp.new + mv copasi/math/CMathEventQueue.cpp.new copasi/math/CMathEventQueue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathReaction.cpp.new copasi/math/CMathReaction.cpp + touch -r copasi/math/CMathReaction.cpp copasi/math/CMathReaction.cpp.new + mv copasi/math/CMathReaction.cpp.new copasi/math/CMathReaction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanProblem.cpp.new copasi/scan/CScanProblem.cpp + touch -r copasi/scan/CScanProblem.cpp copasi/scan/CScanProblem.cpp.new + mv copasi/scan/CScanProblem.cpp.new copasi/scan/CScanProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanTask.cpp.new copasi/scan/CScanTask.cpp + touch -r copasi/scan/CScanTask.cpp copasi/scan/CScanTask.cpp.new + mv copasi/scan/CScanTask.cpp.new copasi/scan/CScanTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanMethod.cpp.new copasi/scan/CScanMethod.cpp + touch -r copasi/scan/CScanMethod.cpp copasi/scan/CScanMethod.cpp.new + mv copasi/scan/CScanMethod.cpp.new copasi/scan/CScanMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesTask.cpp.new copasi/moieties/CMoietiesTask.cpp + touch -r copasi/moieties/CMoietiesTask.cpp copasi/moieties/CMoietiesTask.cpp.new + mv copasi/moieties/CMoietiesTask.cpp.new copasi/moieties/CMoietiesTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesProblem.cpp.new copasi/moieties/CMoietiesProblem.cpp + touch -r copasi/moieties/CMoietiesProblem.cpp copasi/moieties/CMoietiesProblem.cpp.new + mv copasi/moieties/CMoietiesProblem.cpp.new copasi/moieties/CMoietiesProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesMethod.cpp.new copasi/moieties/CMoietiesMethod.cpp + touch -r copasi/moieties/CMoietiesMethod.cpp copasi/moieties/CMoietiesMethod.cpp.new + mv copasi/moieties/CMoietiesMethod.cpp.new copasi/moieties/CMoietiesMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/R/local.cpp.new copasi/bindings/R/local.cpp + touch -r copasi/bindings/R/local.cpp copasi/bindings/R/local.cpp.new + mv copasi/bindings/R/local.cpp.new copasi/bindings/R/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/R/RProcessCallback.cpp.new copasi/bindings/R/RProcessCallback.cpp + touch -r copasi/bindings/R/RProcessCallback.cpp copasi/bindings/R/RProcessCallback.cpp.new + mv copasi/bindings/R/RProcessCallback.cpp.new copasi/bindings/R/RProcessCallback.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/common/downcast_common.cpp.new copasi/bindings/common/downcast_common.cpp + touch -r copasi/bindings/common/downcast_common.cpp copasi/bindings/common/downcast_common.cpp.new + mv copasi/bindings/common/downcast_common.cpp.new copasi/bindings/common/downcast_common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/common/local_common.cpp.new copasi/bindings/common/local_common.cpp + touch -r copasi/bindings/common/local_common.cpp copasi/bindings/common/local_common.cpp.new + mv copasi/bindings/common/local_common.cpp.new copasi/bindings/common/local_common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/java/local.cpp.new copasi/bindings/java/local.cpp + touch -r copasi/bindings/java/local.cpp copasi/bindings/java/local.cpp.new + mv copasi/bindings/java/local.cpp.new copasi/bindings/java/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/octave/local.cpp.new copasi/bindings/octave/local.cpp + touch -r copasi/bindings/octave/local.cpp copasi/bindings/octave/local.cpp.new + mv copasi/bindings/octave/local.cpp.new copasi/bindings/octave/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/csharp/local.cpp.new copasi/bindings/csharp/local.cpp + touch -r copasi/bindings/csharp/local.cpp copasi/bindings/csharp/local.cpp.new + mv copasi/bindings/csharp/local.cpp.new copasi/bindings/csharp/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/perl/local.cpp.new copasi/bindings/perl/local.cpp + touch -r copasi/bindings/perl/local.cpp copasi/bindings/perl/local.cpp.new + mv copasi/bindings/perl/local.cpp.new copasi/bindings/perl/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/python/local.cpp.new copasi/bindings/python/local.cpp + touch -r copasi/bindings/python/local.cpp copasi/bindings/python/local.cpp.new + mv copasi/bindings/python/local.cpp.new copasi/bindings/python/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new copasi/bindings/cpp_examples/runSedML/runSedML.cpp + touch -r copasi/bindings/cpp_examples/runSedML/runSedML.cpp copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new + mv copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new copasi/bindings/cpp_examples/runSedML/runSedML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp + touch -r copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new + mv copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example2/example2.cpp.new copasi/bindings/cpp_examples/example2/example2.cpp + touch -r copasi/bindings/cpp_examples/example2/example2.cpp copasi/bindings/cpp_examples/example2/example2.cpp.new + mv copasi/bindings/cpp_examples/example2/example2.cpp.new copasi/bindings/cpp_examples/example2/example2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new copasi/bindings/cpp_examples/assignParameterSet/main.cpp + touch -r copasi/bindings/cpp_examples/assignParameterSet/main.cpp copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new + mv copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new copasi/bindings/cpp_examples/assignParameterSet/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example3/example3.cpp.new copasi/bindings/cpp_examples/example3/example3.cpp + touch -r copasi/bindings/cpp_examples/example3/example3.cpp copasi/bindings/cpp_examples/example3/example3.cpp.new + mv copasi/bindings/cpp_examples/example3/example3.cpp.new copasi/bindings/cpp_examples/example3/example3.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example4/example4.cpp.new copasi/bindings/cpp_examples/example4/example4.cpp + touch -r copasi/bindings/cpp_examples/example4/example4.cpp copasi/bindings/cpp_examples/example4/example4.cpp.new + mv copasi/bindings/cpp_examples/example4/example4.cpp.new copasi/bindings/cpp_examples/example4/example4.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example5/example5.cpp.new copasi/bindings/cpp_examples/example5/example5.cpp + touch -r copasi/bindings/cpp_examples/example5/example5.cpp copasi/bindings/cpp_examples/example5/example5.cpp.new + mv copasi/bindings/cpp_examples/example5/example5.cpp.new copasi/bindings/cpp_examples/example5/example5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example1/example1.cpp.new copasi/bindings/cpp_examples/example1/example1.cpp + touch -r copasi/bindings/cpp_examples/example1/example1.cpp copasi/bindings/cpp_examples/example1/example1.cpp.new + mv copasi/bindings/cpp_examples/example1/example1.cpp.new copasi/bindings/cpp_examples/example1/example1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example9/example9.cpp.new copasi/bindings/cpp_examples/example9/example9.cpp + touch -r copasi/bindings/cpp_examples/example9/example9.cpp copasi/bindings/cpp_examples/example9/example9.cpp.new + mv copasi/bindings/cpp_examples/example9/example9.cpp.new copasi/bindings/cpp_examples/example9/example9.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example6/example6.cpp.new copasi/bindings/cpp_examples/example6/example6.cpp + touch -r copasi/bindings/cpp_examples/example6/example6.cpp copasi/bindings/cpp_examples/example6/example6.cpp.new + mv copasi/bindings/cpp_examples/example6/example6.cpp.new copasi/bindings/cpp_examples/example6/example6.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example7/example7.cpp.new copasi/bindings/cpp_examples/example7/example7.cpp + touch -r copasi/bindings/cpp_examples/example7/example7.cpp copasi/bindings/cpp_examples/example7/example7.cpp.new + mv copasi/bindings/cpp_examples/example7/example7.cpp.new copasi/bindings/cpp_examples/example7/example7.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example10/example10.cpp.new copasi/bindings/cpp_examples/example10/example10.cpp + touch -r copasi/bindings/cpp_examples/example10/example10.cpp copasi/bindings/cpp_examples/example10/example10.cpp.new + mv copasi/bindings/cpp_examples/example10/example10.cpp.new copasi/bindings/cpp_examples/example10/example10.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp + touch -r copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new + mv copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example8/example8.cpp.new copasi/bindings/cpp_examples/example8/example8.cpp + touch -r copasi/bindings/cpp_examples/example8/example8.cpp copasi/bindings/cpp_examples/example8/example8.cpp.new + mv copasi/bindings/cpp_examples/example8/example8.cpp.new copasi/bindings/cpp_examples/example8/example8.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp + touch -r copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new + mv copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp + touch -r copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new + mv copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new copasi/bindings/cpp_examples/renameActiveReport/main.cpp + touch -r copasi/bindings/cpp_examples/renameActiveReport/main.cpp copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new + mv copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new copasi/bindings/cpp_examples/renameActiveReport/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/renderLayout/main.cpp.new copasi/bindings/cpp_examples/renderLayout/main.cpp + touch -r copasi/bindings/cpp_examples/renderLayout/main.cpp copasi/bindings/cpp_examples/renderLayout/main.cpp.new + mv copasi/bindings/cpp_examples/renderLayout/main.cpp.new copasi/bindings/cpp_examples/renderLayout/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensMethod.cpp.new copasi/sensitivities/CSensMethod.cpp + touch -r copasi/sensitivities/CSensMethod.cpp copasi/sensitivities/CSensMethod.cpp.new + mv copasi/sensitivities/CSensMethod.cpp.new copasi/sensitivities/CSensMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensTask.cpp.new copasi/sensitivities/CSensTask.cpp + touch -r copasi/sensitivities/CSensTask.cpp copasi/sensitivities/CSensTask.cpp.new + mv copasi/sensitivities/CSensTask.cpp.new copasi/sensitivities/CSensTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensProblem.cpp.new copasi/sensitivities/CSensProblem.cpp + touch -r copasi/sensitivities/CSensProblem.cpp copasi/sensitivities/CSensProblem.cpp.new + mv copasi/sensitivities/CSensProblem.cpp.new copasi/sensitivities/CSensProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterBM.cpp.new copasi/tss/CODEExporterBM.cpp + touch -r copasi/tss/CODEExporterBM.cpp copasi/tss/CODEExporterBM.cpp.new + mv copasi/tss/CODEExporterBM.cpp.new copasi/tss/CODEExporterBM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporter.cpp.new copasi/tss/CODEExporter.cpp + touch -r copasi/tss/CODEExporter.cpp copasi/tss/CODEExporter.cpp.new + mv copasi/tss/CODEExporter.cpp.new copasi/tss/CODEExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterC.cpp.new copasi/tss/CODEExporterC.cpp + touch -r copasi/tss/CODEExporterC.cpp copasi/tss/CODEExporterC.cpp.new + mv copasi/tss/CODEExporterC.cpp.new copasi/tss/CODEExporterC.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterXPPAUT.cpp.new copasi/tss/CODEExporterXPPAUT.cpp + touch -r copasi/tss/CODEExporterXPPAUT.cpp copasi/tss/CODEExporterXPPAUT.cpp.new + mv copasi/tss/CODEExporterXPPAUT.cpp.new copasi/tss/CODEExporterXPPAUT.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportDefinitionVector.cpp.new copasi/report/CReportDefinitionVector.cpp + touch -r copasi/report/CReportDefinitionVector.cpp copasi/report/CReportDefinitionVector.cpp.new + mv copasi/report/CReportDefinitionVector.cpp.new copasi/report/CReportDefinitionVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/COutputAssistant.cpp.new copasi/report/COutputAssistant.cpp + touch -r copasi/report/COutputAssistant.cpp copasi/report/COutputAssistant.cpp.new + mv copasi/report/COutputAssistant.cpp.new copasi/report/COutputAssistant.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CKeyFactory.cpp.new copasi/report/CKeyFactory.cpp + touch -r copasi/report/CKeyFactory.cpp copasi/report/CKeyFactory.cpp.new + mv copasi/report/CKeyFactory.cpp.new copasi/report/CKeyFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportBody.cpp.new copasi/report/CReportBody.cpp + touch -r copasi/report/CReportBody.cpp copasi/report/CReportBody.cpp.new + mv copasi/report/CReportBody.cpp.new copasi/report/CReportBody.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportDefinition.cpp.new copasi/report/CReportDefinition.cpp + touch -r copasi/report/CReportDefinition.cpp copasi/report/CReportDefinition.cpp.new + mv copasi/report/CReportDefinition.cpp.new copasi/report/CReportDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReport.cpp.new copasi/report/CReport.cpp + touch -r copasi/report/CReport.cpp copasi/report/CReport.cpp.new + mv copasi/report/CReport.cpp.new copasi/report/CReport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNAMethod.cpp.new copasi/lna/CLNAMethod.cpp + touch -r copasi/lna/CLNAMethod.cpp copasi/lna/CLNAMethod.cpp.new + mv copasi/lna/CLNAMethod.cpp.new copasi/lna/CLNAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNATask.cpp.new copasi/lna/CLNATask.cpp + touch -r copasi/lna/CLNATask.cpp copasi/lna/CLNATask.cpp.new + mv copasi/lna/CLNATask.cpp.new copasi/lna/CLNATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNAProblem.cpp.new copasi/lna/CLNAProblem.cpp + touch -r copasi/lna/CLNAProblem.cpp copasi/lna/CLNAProblem.cpp.new + mv copasi/lna/CLNAProblem.cpp.new copasi/lna/CLNAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionMethod.cpp.new copasi/crosssection/CCrossSectionMethod.cpp + touch -r copasi/crosssection/CCrossSectionMethod.cpp copasi/crosssection/CCrossSectionMethod.cpp.new + mv copasi/crosssection/CCrossSectionMethod.cpp.new copasi/crosssection/CCrossSectionMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionProblem.cpp.new copasi/crosssection/CCrossSectionProblem.cpp + touch -r copasi/crosssection/CCrossSectionProblem.cpp copasi/crosssection/CCrossSectionProblem.cpp.new + mv copasi/crosssection/CCrossSectionProblem.cpp.new copasi/crosssection/CCrossSectionProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionTask.cpp.new copasi/crosssection/CCrossSectionTask.cpp + touch -r copasi/crosssection/CCrossSectionTask.cpp copasi/crosssection/CCrossSectionTask.cpp.new + mv copasi/crosssection/CCrossSectionTask.cpp.new copasi/crosssection/CCrossSectionTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCAProblem.cpp.new copasi/steadystate/CMCAProblem.cpp + touch -r copasi/steadystate/CMCAProblem.cpp copasi/steadystate/CMCAProblem.cpp.new + mv copasi/steadystate/CMCAProblem.cpp.new copasi/steadystate/CMCAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCATask.cpp.new copasi/steadystate/CMCATask.cpp + touch -r copasi/steadystate/CMCATask.cpp copasi/steadystate/CMCATask.cpp.new + mv copasi/steadystate/CMCATask.cpp.new copasi/steadystate/CMCATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateProblem.cpp.new copasi/steadystate/CSteadyStateProblem.cpp + touch -r copasi/steadystate/CSteadyStateProblem.cpp copasi/steadystate/CSteadyStateProblem.cpp.new + mv copasi/steadystate/CSteadyStateProblem.cpp.new copasi/steadystate/CSteadyStateProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCAMethod.cpp.new copasi/steadystate/CMCAMethod.cpp + touch -r copasi/steadystate/CMCAMethod.cpp copasi/steadystate/CMCAMethod.cpp.new + mv copasi/steadystate/CMCAMethod.cpp.new copasi/steadystate/CMCAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateTask.cpp.new copasi/steadystate/CSteadyStateTask.cpp + touch -r copasi/steadystate/CSteadyStateTask.cpp copasi/steadystate/CSteadyStateTask.cpp.new + mv copasi/steadystate/CSteadyStateTask.cpp.new copasi/steadystate/CSteadyStateTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CNewtonMethod.cpp.new copasi/steadystate/CNewtonMethod.cpp + touch -r copasi/steadystate/CNewtonMethod.cpp copasi/steadystate/CNewtonMethod.cpp.new + mv copasi/steadystate/CNewtonMethod.cpp.new copasi/steadystate/CNewtonMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CEigen.cpp.new copasi/steadystate/CEigen.cpp + touch -r copasi/steadystate/CEigen.cpp copasi/steadystate/CEigen.cpp.new + mv copasi/steadystate/CEigen.cpp.new copasi/steadystate/CEigen.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateMethod.cpp.new copasi/steadystate/CSteadyStateMethod.cpp + touch -r copasi/steadystate/CSteadyStateMethod.cpp copasi/steadystate/CSteadyStateMethod.cpp.new + mv copasi/steadystate/CSteadyStateMethod.cpp.new copasi/steadystate/CSteadyStateMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dColor.cpp.new copasi/barChart/qwt3dColor.cpp + touch -r copasi/barChart/qwt3dColor.cpp copasi/barChart/qwt3dColor.cpp.new + mv copasi/barChart/qwt3dColor.cpp.new copasi/barChart/qwt3dColor.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dPlot.cpp.new copasi/barChart/qwt3dPlot.cpp + touch -r copasi/barChart/qwt3dPlot.cpp copasi/barChart/qwt3dPlot.cpp.new + mv copasi/barChart/qwt3dPlot.cpp.new copasi/barChart/qwt3dPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/CQBaseWidget.cpp.new copasi/barChart/CQBaseWidget.cpp + touch -r copasi/barChart/CQBaseWidget.cpp copasi/barChart/CQBaseWidget.cpp.new + mv copasi/barChart/CQBaseWidget.cpp.new copasi/barChart/CQBaseWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dBars.cpp.new copasi/barChart/qwt3dBars.cpp + touch -r copasi/barChart/qwt3dBars.cpp copasi/barChart/qwt3dBars.cpp.new + mv copasi/barChart/qwt3dBars.cpp.new copasi/barChart/qwt3dBars.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dScale.cpp.new copasi/barChart/qwt3dScale.cpp + touch -r copasi/barChart/qwt3dScale.cpp copasi/barChart/qwt3dScale.cpp.new + mv copasi/barChart/qwt3dScale.cpp.new copasi/barChart/qwt3dScale.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dstoda.cpp.new copasi/odepack++/dstoda.cpp + touch -r copasi/odepack++/dstoda.cpp copasi/odepack++/dstoda.cpp.new + mv copasi/odepack++/dstoda.cpp.new copasi/odepack++/dstoda.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/common.cpp.new copasi/odepack++/common.cpp + touch -r copasi/odepack++/common.cpp copasi/odepack++/common.cpp.new + mv copasi/odepack++/common.cpp.new copasi/odepack++/common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CInternalSolver.cpp.new copasi/odepack++/CInternalSolver.cpp + touch -r copasi/odepack++/CInternalSolver.cpp copasi/odepack++/CInternalSolver.cpp.new + mv copasi/odepack++/CInternalSolver.cpp.new copasi/odepack++/CInternalSolver.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/drcheck.cpp.new copasi/odepack++/drcheck.cpp + touch -r copasi/odepack++/drcheck.cpp copasi/odepack++/drcheck.cpp.new + mv copasi/odepack++/drcheck.cpp.new copasi/odepack++/drcheck.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dbnorm.cpp.new copasi/odepack++/dbnorm.cpp + touch -r copasi/odepack++/dbnorm.cpp copasi/odepack++/dbnorm.cpp.new + mv copasi/odepack++/dbnorm.cpp.new copasi/odepack++/dbnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dmnorm.cpp.new copasi/odepack++/dmnorm.cpp + touch -r copasi/odepack++/dmnorm.cpp copasi/odepack++/dmnorm.cpp.new + mv copasi/odepack++/dmnorm.cpp.new copasi/odepack++/dmnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CLSODAR.cpp.new copasi/odepack++/CLSODAR.cpp + touch -r copasi/odepack++/CLSODAR.cpp copasi/odepack++/CLSODAR.cpp.new + mv copasi/odepack++/CLSODAR.cpp.new copasi/odepack++/CLSODAR.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dewset.cpp.new copasi/odepack++/dewset.cpp + touch -r copasi/odepack++/dewset.cpp copasi/odepack++/dewset.cpp.new + mv copasi/odepack++/dewset.cpp.new copasi/odepack++/dewset.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CLSODA.cpp.new copasi/odepack++/CLSODA.cpp + touch -r copasi/odepack++/CLSODA.cpp copasi/odepack++/CLSODA.cpp.new + mv copasi/odepack++/CLSODA.cpp.new copasi/odepack++/CLSODA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/Cxerrwd.cpp.new copasi/odepack++/Cxerrwd.cpp + touch -r copasi/odepack++/Cxerrwd.cpp copasi/odepack++/Cxerrwd.cpp.new + mv copasi/odepack++/Cxerrwd.cpp.new copasi/odepack++/Cxerrwd.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dprja.cpp.new copasi/odepack++/dprja.cpp + touch -r copasi/odepack++/dprja.cpp copasi/odepack++/dprja.cpp.new + mv copasi/odepack++/dprja.cpp.new copasi/odepack++/dprja.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dcfode.cpp.new copasi/odepack++/dcfode.cpp + touch -r copasi/odepack++/dcfode.cpp copasi/odepack++/dcfode.cpp.new + mv copasi/odepack++/dcfode.cpp.new copasi/odepack++/dcfode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dintdy.cpp.new copasi/odepack++/dintdy.cpp + touch -r copasi/odepack++/dintdy.cpp copasi/odepack++/dintdy.cpp.new + mv copasi/odepack++/dintdy.cpp.new copasi/odepack++/dintdy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dsolsy.cpp.new copasi/odepack++/dsolsy.cpp + touch -r copasi/odepack++/dsolsy.cpp copasi/odepack++/dsolsy.cpp.new + mv copasi/odepack++/dsolsy.cpp.new copasi/odepack++/dsolsy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dfnorm.cpp.new copasi/odepack++/dfnorm.cpp + touch -r copasi/odepack++/dfnorm.cpp copasi/odepack++/dfnorm.cpp.new + mv copasi/odepack++/dfnorm.cpp.new copasi/odepack++/dfnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoUI/CQUndoDialog.cpp.new copasi/undoUI/CQUndoDialog.cpp + touch -r copasi/undoUI/CQUndoDialog.cpp copasi/undoUI/CQUndoDialog.cpp.new + mv copasi/undoUI/CQUndoDialog.cpp.new copasi/undoUI/CQUndoDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoUI/CQUndoDM.cpp.new copasi/undoUI/CQUndoDM.cpp + touch -r copasi/undoUI/CQUndoDM.cpp copasi/undoUI/CQUndoDM.cpp.new + mv copasi/undoUI/CQUndoDM.cpp.new copasi/undoUI/CQUndoDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLText.cpp.new copasi/layout/CLText.cpp + touch -r copasi/layout/CLText.cpp copasi/layout/CLText.cpp.new + mv copasi/layout/CLText.cpp.new copasi/layout/CLText.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderResolver.cpp.new copasi/layout/CLRenderResolver.cpp + touch -r copasi/layout/CLRenderResolver.cpp copasi/layout/CLRenderResolver.cpp.new + mv copasi/layout/CLRenderResolver.cpp.new copasi/layout/CLRenderResolver.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLayoutRenderer.cpp.new copasi/layout/CLLayoutRenderer.cpp + touch -r copasi/layout/CLLayoutRenderer.cpp copasi/layout/CLLayoutRenderer.cpp.new + mv copasi/layout/CLLayoutRenderer.cpp.new copasi/layout/CLLayoutRenderer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutInitializer.cpp.new copasi/layout/CLayoutInitializer.cpp + touch -r copasi/layout/CLayoutInitializer.cpp copasi/layout/CLayoutInitializer.cpp.new + mv copasi/layout/CLayoutInitializer.cpp.new copasi/layout/CLayoutInitializer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlobalRenderInformation.cpp.new copasi/layout/CLGlobalRenderInformation.cpp + touch -r copasi/layout/CLGlobalRenderInformation.cpp copasi/layout/CLGlobalRenderInformation.cpp.new + mv copasi/layout/CLGlobalRenderInformation.cpp.new copasi/layout/CLGlobalRenderInformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderCurve.cpp.new copasi/layout/CLRenderCurve.cpp + touch -r copasi/layout/CLRenderCurve.cpp copasi/layout/CLRenderCurve.cpp.new + mv copasi/layout/CLRenderCurve.cpp.new copasi/layout/CLRenderCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLineEnding.cpp.new copasi/layout/CLLineEnding.cpp + touch -r copasi/layout/CLLineEnding.cpp copasi/layout/CLLineEnding.cpp.new + mv copasi/layout/CLLineEnding.cpp.new copasi/layout/CLLineEnding.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLStyle.cpp.new copasi/layout/CLStyle.cpp + touch -r copasi/layout/CLStyle.cpp copasi/layout/CLStyle.cpp.new + mv copasi/layout/CLStyle.cpp.new copasi/layout/CLStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGroup.cpp.new copasi/layout/CLGroup.cpp + touch -r copasi/layout/CLGroup.cpp copasi/layout/CLGroup.cpp.new + mv copasi/layout/CLGroup.cpp.new copasi/layout/CLGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderFlattener.cpp.new copasi/layout/CLRenderFlattener.cpp + touch -r copasi/layout/CLRenderFlattener.cpp copasi/layout/CLRenderFlattener.cpp.new + mv copasi/layout/CLRenderFlattener.cpp.new copasi/layout/CLRenderFlattener.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlyphs.cpp.new copasi/layout/CLGlyphs.cpp + touch -r copasi/layout/CLGlyphs.cpp copasi/layout/CLGlyphs.cpp.new + mv copasi/layout/CLGlyphs.cpp.new copasi/layout/CLGlyphs.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalPrimitive1D.cpp.new copasi/layout/CLGraphicalPrimitive1D.cpp + touch -r copasi/layout/CLGraphicalPrimitive1D.cpp copasi/layout/CLGraphicalPrimitive1D.cpp.new + mv copasi/layout/CLGraphicalPrimitive1D.cpp.new copasi/layout/CLGraphicalPrimitive1D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/utility_classes.cpp.new copasi/layout/utility_classes.cpp + touch -r copasi/layout/utility_classes.cpp copasi/layout/utility_classes.cpp.new + mv copasi/layout/utility_classes.cpp.new copasi/layout/utility_classes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLTransformation2D.cpp.new copasi/layout/CLTransformation2D.cpp + touch -r copasi/layout/CLTransformation2D.cpp copasi/layout/CLTransformation2D.cpp.new + mv copasi/layout/CLTransformation2D.cpp.new copasi/layout/CLTransformation2D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLEllipse.cpp.new copasi/layout/CLEllipse.cpp + touch -r copasi/layout/CLEllipse.cpp copasi/layout/CLEllipse.cpp.new + mv copasi/layout/CLEllipse.cpp.new copasi/layout/CLEllipse.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientStops.cpp.new copasi/layout/CLGradientStops.cpp + touch -r copasi/layout/CLGradientStops.cpp copasi/layout/CLGradientStops.cpp.new + mv copasi/layout/CLGradientStops.cpp.new copasi/layout/CLGradientStops.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLImage.cpp.new copasi/layout/CLImage.cpp + touch -r copasi/layout/CLImage.cpp copasi/layout/CLImage.cpp.new + mv copasi/layout/CLImage.cpp.new copasi/layout/CLImage.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRelAbsVector.cpp.new copasi/layout/CLRelAbsVector.cpp + touch -r copasi/layout/CLRelAbsVector.cpp copasi/layout/CLRelAbsVector.cpp.new + mv copasi/layout/CLRelAbsVector.cpp.new copasi/layout/CLRelAbsVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientStop.cpp.new copasi/layout/CLGradientStop.cpp + touch -r copasi/layout/CLGradientStop.cpp copasi/layout/CLGradientStop.cpp.new + mv copasi/layout/CLGradientStop.cpp.new copasi/layout/CLGradientStop.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLinearGradient.cpp.new copasi/layout/CLLinearGradient.cpp + touch -r copasi/layout/CLLinearGradient.cpp copasi/layout/CLLinearGradient.cpp.new + mv copasi/layout/CLLinearGradient.cpp.new copasi/layout/CLLinearGradient.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalPrimitive2D.cpp.new copasi/layout/CLGraphicalPrimitive2D.cpp + touch -r copasi/layout/CLGraphicalPrimitive2D.cpp copasi/layout/CLGraphicalPrimitive2D.cpp.new + mv copasi/layout/CLGraphicalPrimitive2D.cpp.new copasi/layout/CLGraphicalPrimitive2D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/SBMLDocumentLoader.cpp.new copasi/layout/SBMLDocumentLoader.cpp + touch -r copasi/layout/SBMLDocumentLoader.cpp copasi/layout/SBMLDocumentLoader.cpp.new + mv copasi/layout/SBMLDocumentLoader.cpp.new copasi/layout/SBMLDocumentLoader.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutEngine.cpp.new copasi/layout/CLayoutEngine.cpp + touch -r copasi/layout/CLayoutEngine.cpp copasi/layout/CLayoutEngine.cpp.new + mv copasi/layout/CLayoutEngine.cpp.new copasi/layout/CLayoutEngine.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CAbstractLayoutInterface.cpp.new copasi/layout/CAbstractLayoutInterface.cpp + touch -r copasi/layout/CAbstractLayoutInterface.cpp copasi/layout/CAbstractLayoutInterface.cpp.new + mv copasi/layout/CAbstractLayoutInterface.cpp.new copasi/layout/CAbstractLayoutInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLPolygon.cpp.new copasi/layout/CLPolygon.cpp + touch -r copasi/layout/CLPolygon.cpp copasi/layout/CLPolygon.cpp.new + mv copasi/layout/CLPolygon.cpp.new copasi/layout/CLPolygon.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderPoint.cpp.new copasi/layout/CLRenderPoint.cpp + touch -r copasi/layout/CLRenderPoint.cpp copasi/layout/CLRenderPoint.cpp.new + mv copasi/layout/CLRenderPoint.cpp.new copasi/layout/CLRenderPoint.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLCurve.cpp.new copasi/layout/CLCurve.cpp + touch -r copasi/layout/CLCurve.cpp copasi/layout/CLCurve.cpp.new + mv copasi/layout/CLCurve.cpp.new copasi/layout/CLCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLBase.cpp.new copasi/layout/CLBase.cpp + touch -r copasi/layout/CLBase.cpp copasi/layout/CLBase.cpp.new + mv copasi/layout/CLBase.cpp.new copasi/layout/CLBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLDefaultStyles.cpp.new copasi/layout/CLDefaultStyles.cpp + touch -r copasi/layout/CLDefaultStyles.cpp copasi/layout/CLDefaultStyles.cpp.new + mv copasi/layout/CLDefaultStyles.cpp.new copasi/layout/CLDefaultStyles.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutState.cpp.new copasi/layout/CLayoutState.cpp + touch -r copasi/layout/CLayoutState.cpp copasi/layout/CLayoutState.cpp.new + mv copasi/layout/CLayoutState.cpp.new copasi/layout/CLayoutState.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLSimpleImageTexturizer.cpp.new copasi/layout/CLSimpleImageTexturizer.cpp + touch -r copasi/layout/CLSimpleImageTexturizer.cpp copasi/layout/CLSimpleImageTexturizer.cpp.new + mv copasi/layout/CLSimpleImageTexturizer.cpp.new copasi/layout/CLSimpleImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CListOfLayouts.cpp.new copasi/layout/CListOfLayouts.cpp + touch -r copasi/layout/CListOfLayouts.cpp copasi/layout/CListOfLayouts.cpp.new + mv copasi/layout/CListOfLayouts.cpp.new copasi/layout/CListOfLayouts.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRadialGradient.cpp.new copasi/layout/CLRadialGradient.cpp + touch -r copasi/layout/CLRadialGradient.cpp copasi/layout/CLRadialGradient.cpp.new + mv copasi/layout/CLRadialGradient.cpp.new copasi/layout/CLRadialGradient.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayout.cpp.new copasi/layout/CLayout.cpp + touch -r copasi/layout/CLayout.cpp copasi/layout/CLayout.cpp.new + mv copasi/layout/CLayout.cpp.new copasi/layout/CLayout.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderInformationBase.cpp.new copasi/layout/CLRenderInformationBase.cpp + touch -r copasi/layout/CLRenderInformationBase.cpp copasi/layout/CLRenderInformationBase.cpp.new + mv copasi/layout/CLRenderInformationBase.cpp.new copasi/layout/CLRenderInformationBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLUnresolvedReferenceException.cpp.new copasi/layout/CLUnresolvedReferenceException.cpp + touch -r copasi/layout/CLUnresolvedReferenceException.cpp copasi/layout/CLUnresolvedReferenceException.cpp.new + mv copasi/layout/CLUnresolvedReferenceException.cpp.new copasi/layout/CLUnresolvedReferenceException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLColorDefinition.cpp.new copasi/layout/CLColorDefinition.cpp + touch -r copasi/layout/CLColorDefinition.cpp copasi/layout/CLColorDefinition.cpp.new + mv copasi/layout/CLColorDefinition.cpp.new copasi/layout/CLColorDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientBase.cpp.new copasi/layout/CLGradientBase.cpp + touch -r copasi/layout/CLGradientBase.cpp copasi/layout/CLGradientBase.cpp.new + mv copasi/layout/CLGradientBase.cpp.new copasi/layout/CLGradientBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLocalStyle.cpp.new copasi/layout/CLLocalStyle.cpp + touch -r copasi/layout/CLLocalStyle.cpp copasi/layout/CLLocalStyle.cpp.new + mv copasi/layout/CLLocalStyle.cpp.new copasi/layout/CLLocalStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalObject.cpp.new copasi/layout/CLGraphicalObject.cpp + touch -r copasi/layout/CLGraphicalObject.cpp copasi/layout/CLGraphicalObject.cpp.new + mv copasi/layout/CLGraphicalObject.cpp.new copasi/layout/CLGraphicalObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLReactionGlyph.cpp.new copasi/layout/CLReactionGlyph.cpp + touch -r copasi/layout/CLReactionGlyph.cpp copasi/layout/CLReactionGlyph.cpp.new + mv copasi/layout/CLReactionGlyph.cpp.new copasi/layout/CLReactionGlyph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLTransformation.cpp.new copasi/layout/CLTransformation.cpp + touch -r copasi/layout/CLTransformation.cpp copasi/layout/CLTransformation.cpp.new + mv copasi/layout/CLTransformation.cpp.new copasi/layout/CLTransformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlobalStyle.cpp.new copasi/layout/CLGlobalStyle.cpp + touch -r copasi/layout/CLGlobalStyle.cpp copasi/layout/CLGlobalStyle.cpp.new + mv copasi/layout/CLGlobalStyle.cpp.new copasi/layout/CLGlobalStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderCubicBezier.cpp.new copasi/layout/CLRenderCubicBezier.cpp + touch -r copasi/layout/CLRenderCubicBezier.cpp copasi/layout/CLRenderCubicBezier.cpp.new + mv copasi/layout/CLRenderCubicBezier.cpp.new copasi/layout/CLRenderCubicBezier.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLImageTexturizer.cpp.new copasi/layout/CLImageTexturizer.cpp + touch -r copasi/layout/CLImageTexturizer.cpp copasi/layout/CLImageTexturizer.cpp.new + mv copasi/layout/CLImageTexturizer.cpp.new copasi/layout/CLImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CCopasiSpringLayout.cpp.new copasi/layout/CCopasiSpringLayout.cpp + touch -r copasi/layout/CCopasiSpringLayout.cpp copasi/layout/CCopasiSpringLayout.cpp.new + mv copasi/layout/CCopasiSpringLayout.cpp.new copasi/layout/CCopasiSpringLayout.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLocalRenderInformation.cpp.new copasi/layout/CLLocalRenderInformation.cpp + touch -r copasi/layout/CLLocalRenderInformation.cpp copasi/layout/CLLocalRenderInformation.cpp.new + mv copasi/layout/CLLocalRenderInformation.cpp.new copasi/layout/CLLocalRenderInformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRectangle.cpp.new copasi/layout/CLRectangle.cpp + touch -r copasi/layout/CLRectangle.cpp copasi/layout/CLRectangle.cpp.new + mv copasi/layout/CLRectangle.cpp.new copasi/layout/CLRectangle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/Cmt19937.cpp.new copasi/randomGenerator/Cmt19937.cpp + touch -r copasi/randomGenerator/Cmt19937.cpp copasi/randomGenerator/Cmt19937.cpp.new + mv copasi/randomGenerator/Cmt19937.cpp.new copasi/randomGenerator/Cmt19937.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/CPermutation.cpp.new copasi/randomGenerator/CPermutation.cpp + touch -r copasi/randomGenerator/CPermutation.cpp copasi/randomGenerator/CPermutation.cpp.new + mv copasi/randomGenerator/CPermutation.cpp.new copasi/randomGenerator/CPermutation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/Cr250.cpp.new copasi/randomGenerator/Cr250.cpp + touch -r copasi/randomGenerator/Cr250.cpp copasi/randomGenerator/Cr250.cpp.new + mv copasi/randomGenerator/Cr250.cpp.new copasi/randomGenerator/Cr250.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/CRandom.cpp.new copasi/randomGenerator/CRandom.cpp + touch -r copasi/randomGenerator/CRandom.cpp copasi/randomGenerator/CRandom.cpp.new + mv copasi/randomGenerator/CRandom.cpp.new copasi/randomGenerator/CRandom.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/CSBMLExporter.cpp.new copasi/sbml/CSBMLExporter.cpp + touch -r copasi/sbml/CSBMLExporter.cpp copasi/sbml/CSBMLExporter.cpp.new + mv copasi/sbml/CSBMLExporter.cpp.new copasi/sbml/CSBMLExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLReference.cpp.new copasi/sbml/SBMLReference.cpp + touch -r copasi/sbml/SBMLReference.cpp copasi/sbml/SBMLReference.cpp.new + mv copasi/sbml/SBMLReference.cpp.new copasi/sbml/SBMLReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/StdException.cpp.new copasi/sbml/StdException.cpp + touch -r copasi/sbml/StdException.cpp copasi/sbml/StdException.cpp.new + mv copasi/sbml/StdException.cpp.new copasi/sbml/StdException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/CCellDesignerImporter.cpp.new copasi/sbml/CCellDesignerImporter.cpp + touch -r copasi/sbml/CCellDesignerImporter.cpp copasi/sbml/CCellDesignerImporter.cpp.new + mv copasi/sbml/CCellDesignerImporter.cpp.new copasi/sbml/CCellDesignerImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLUtils.cpp.new copasi/sbml/SBMLUtils.cpp + touch -r copasi/sbml/SBMLUtils.cpp copasi/sbml/SBMLUtils.cpp.new + mv copasi/sbml/SBMLUtils.cpp.new copasi/sbml/SBMLUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLIncompatibility.cpp.new copasi/sbml/SBMLIncompatibility.cpp + touch -r copasi/sbml/SBMLIncompatibility.cpp copasi/sbml/SBMLIncompatibility.cpp.new + mv copasi/sbml/SBMLIncompatibility.cpp.new copasi/sbml/SBMLIncompatibility.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000092.cpp.new copasi/sbml/unittests/test000092.cpp + touch -r copasi/sbml/unittests/test000092.cpp copasi/sbml/unittests/test000092.cpp.new + mv copasi/sbml/unittests/test000092.cpp.new copasi/sbml/unittests/test000092.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000068.cpp.new copasi/sbml/unittests/test000068.cpp + touch -r copasi/sbml/unittests/test000068.cpp copasi/sbml/unittests/test000068.cpp.new + mv copasi/sbml/unittests/test000068.cpp.new copasi/sbml/unittests/test000068.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000071.cpp.new copasi/sbml/unittests/test000071.cpp + touch -r copasi/sbml/unittests/test000071.cpp copasi/sbml/unittests/test000071.cpp.new + mv copasi/sbml/unittests/test000071.cpp.new copasi/sbml/unittests/test000071.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000066.cpp.new copasi/sbml/unittests/test000066.cpp + touch -r copasi/sbml/unittests/test000066.cpp copasi/sbml/unittests/test000066.cpp.new + mv copasi/sbml/unittests/test000066.cpp.new copasi/sbml/unittests/test000066.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000084.cpp.new copasi/sbml/unittests/test000084.cpp + touch -r copasi/sbml/unittests/test000084.cpp copasi/sbml/unittests/test000084.cpp.new + mv copasi/sbml/unittests/test000084.cpp.new copasi/sbml/unittests/test000084.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000059.cpp.new copasi/sbml/unittests/test000059.cpp + touch -r copasi/sbml/unittests/test000059.cpp copasi/sbml/unittests/test000059.cpp.new + mv copasi/sbml/unittests/test000059.cpp.new copasi/sbml/unittests/test000059.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000094.cpp.new copasi/sbml/unittests/test000094.cpp + touch -r copasi/sbml/unittests/test000094.cpp copasi/sbml/unittests/test000094.cpp.new + mv copasi/sbml/unittests/test000094.cpp.new copasi/sbml/unittests/test000094.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000100.cpp.new copasi/sbml/unittests/test000100.cpp + touch -r copasi/sbml/unittests/test000100.cpp copasi/sbml/unittests/test000100.cpp.new + mv copasi/sbml/unittests/test000100.cpp.new copasi/sbml/unittests/test000100.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000024.cpp.new copasi/sbml/unittests/test000024.cpp + touch -r copasi/sbml/unittests/test000024.cpp copasi/sbml/unittests/test000024.cpp.new + mv copasi/sbml/unittests/test000024.cpp.new copasi/sbml/unittests/test000024.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000003.cpp.new copasi/sbml/unittests/test000003.cpp + touch -r copasi/sbml/unittests/test000003.cpp copasi/sbml/unittests/test000003.cpp.new + mv copasi/sbml/unittests/test000003.cpp.new copasi/sbml/unittests/test000003.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000082.cpp.new copasi/sbml/unittests/test000082.cpp + touch -r copasi/sbml/unittests/test000082.cpp copasi/sbml/unittests/test000082.cpp.new + mv copasi/sbml/unittests/test000082.cpp.new copasi/sbml/unittests/test000082.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000095.cpp.new copasi/sbml/unittests/test000095.cpp + touch -r copasi/sbml/unittests/test000095.cpp copasi/sbml/unittests/test000095.cpp.new + mv copasi/sbml/unittests/test000095.cpp.new copasi/sbml/unittests/test000095.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000080.cpp.new copasi/sbml/unittests/test000080.cpp + touch -r copasi/sbml/unittests/test000080.cpp copasi/sbml/unittests/test000080.cpp.new + mv copasi/sbml/unittests/test000080.cpp.new copasi/sbml/unittests/test000080.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000060.cpp.new copasi/sbml/unittests/test000060.cpp + touch -r copasi/sbml/unittests/test000060.cpp copasi/sbml/unittests/test000060.cpp.new + mv copasi/sbml/unittests/test000060.cpp.new copasi/sbml/unittests/test000060.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000034.cpp.new copasi/sbml/unittests/test000034.cpp + touch -r copasi/sbml/unittests/test000034.cpp copasi/sbml/unittests/test000034.cpp.new + mv copasi/sbml/unittests/test000034.cpp.new copasi/sbml/unittests/test000034.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000042.cpp.new copasi/sbml/unittests/test000042.cpp + touch -r copasi/sbml/unittests/test000042.cpp copasi/sbml/unittests/test000042.cpp.new + mv copasi/sbml/unittests/test000042.cpp.new copasi/sbml/unittests/test000042.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000001.cpp.new copasi/sbml/unittests/test000001.cpp + touch -r copasi/sbml/unittests/test000001.cpp copasi/sbml/unittests/test000001.cpp.new + mv copasi/sbml/unittests/test000001.cpp.new copasi/sbml/unittests/test000001.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000016.cpp.new copasi/sbml/unittests/test000016.cpp + touch -r copasi/sbml/unittests/test000016.cpp copasi/sbml/unittests/test000016.cpp.new + mv copasi/sbml/unittests/test000016.cpp.new copasi/sbml/unittests/test000016.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000102.cpp.new copasi/sbml/unittests/test000102.cpp + touch -r copasi/sbml/unittests/test000102.cpp copasi/sbml/unittests/test000102.cpp.new + mv copasi/sbml/unittests/test000102.cpp.new copasi/sbml/unittests/test000102.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000065.cpp.new copasi/sbml/unittests/test000065.cpp + touch -r copasi/sbml/unittests/test000065.cpp copasi/sbml/unittests/test000065.cpp.new + mv copasi/sbml/unittests/test000065.cpp.new copasi/sbml/unittests/test000065.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000067.cpp.new copasi/sbml/unittests/test000067.cpp + touch -r copasi/sbml/unittests/test000067.cpp copasi/sbml/unittests/test000067.cpp.new + mv copasi/sbml/unittests/test000067.cpp.new copasi/sbml/unittests/test000067.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000045.cpp.new copasi/sbml/unittests/test000045.cpp + touch -r copasi/sbml/unittests/test000045.cpp copasi/sbml/unittests/test000045.cpp.new + mv copasi/sbml/unittests/test000045.cpp.new copasi/sbml/unittests/test000045.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000051.cpp.new copasi/sbml/unittests/test000051.cpp + touch -r copasi/sbml/unittests/test000051.cpp copasi/sbml/unittests/test000051.cpp.new + mv copasi/sbml/unittests/test000051.cpp.new copasi/sbml/unittests/test000051.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000021.cpp.new copasi/sbml/unittests/test000021.cpp + touch -r copasi/sbml/unittests/test000021.cpp copasi/sbml/unittests/test000021.cpp.new + mv copasi/sbml/unittests/test000021.cpp.new copasi/sbml/unittests/test000021.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000014.cpp.new copasi/sbml/unittests/test000014.cpp + touch -r copasi/sbml/unittests/test000014.cpp copasi/sbml/unittests/test000014.cpp.new + mv copasi/sbml/unittests/test000014.cpp.new copasi/sbml/unittests/test000014.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000098.cpp.new copasi/sbml/unittests/test000098.cpp + touch -r copasi/sbml/unittests/test000098.cpp copasi/sbml/unittests/test000098.cpp.new + mv copasi/sbml/unittests/test000098.cpp.new copasi/sbml/unittests/test000098.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000031.cpp.new copasi/sbml/unittests/test000031.cpp + touch -r copasi/sbml/unittests/test000031.cpp copasi/sbml/unittests/test000031.cpp.new + mv copasi/sbml/unittests/test000031.cpp.new copasi/sbml/unittests/test000031.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000085.cpp.new copasi/sbml/unittests/test000085.cpp + touch -r copasi/sbml/unittests/test000085.cpp copasi/sbml/unittests/test000085.cpp.new + mv copasi/sbml/unittests/test000085.cpp.new copasi/sbml/unittests/test000085.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000103.cpp.new copasi/sbml/unittests/test000103.cpp + touch -r copasi/sbml/unittests/test000103.cpp copasi/sbml/unittests/test000103.cpp.new + mv copasi/sbml/unittests/test000103.cpp.new copasi/sbml/unittests/test000103.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000025.cpp.new copasi/sbml/unittests/test000025.cpp + touch -r copasi/sbml/unittests/test000025.cpp copasi/sbml/unittests/test000025.cpp.new + mv copasi/sbml/unittests/test000025.cpp.new copasi/sbml/unittests/test000025.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000006.cpp.new copasi/sbml/unittests/test000006.cpp + touch -r copasi/sbml/unittests/test000006.cpp copasi/sbml/unittests/test000006.cpp.new + mv copasi/sbml/unittests/test000006.cpp.new copasi/sbml/unittests/test000006.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000018.cpp.new copasi/sbml/unittests/test000018.cpp + touch -r copasi/sbml/unittests/test000018.cpp copasi/sbml/unittests/test000018.cpp.new + mv copasi/sbml/unittests/test000018.cpp.new copasi/sbml/unittests/test000018.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000089.cpp.new copasi/sbml/unittests/test000089.cpp + touch -r copasi/sbml/unittests/test000089.cpp copasi/sbml/unittests/test000089.cpp.new + mv copasi/sbml/unittests/test000089.cpp.new copasi/sbml/unittests/test000089.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000005.cpp.new copasi/sbml/unittests/test000005.cpp + touch -r copasi/sbml/unittests/test000005.cpp copasi/sbml/unittests/test000005.cpp.new + mv copasi/sbml/unittests/test000005.cpp.new copasi/sbml/unittests/test000005.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000020.cpp.new copasi/sbml/unittests/test000020.cpp + touch -r copasi/sbml/unittests/test000020.cpp copasi/sbml/unittests/test000020.cpp.new + mv copasi/sbml/unittests/test000020.cpp.new copasi/sbml/unittests/test000020.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000010.cpp.new copasi/sbml/unittests/test000010.cpp + touch -r copasi/sbml/unittests/test000010.cpp copasi/sbml/unittests/test000010.cpp.new + mv copasi/sbml/unittests/test000010.cpp.new copasi/sbml/unittests/test000010.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000088.cpp.new copasi/sbml/unittests/test000088.cpp + touch -r copasi/sbml/unittests/test000088.cpp copasi/sbml/unittests/test000088.cpp.new + mv copasi/sbml/unittests/test000088.cpp.new copasi/sbml/unittests/test000088.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000099.cpp.new copasi/sbml/unittests/test000099.cpp + touch -r copasi/sbml/unittests/test000099.cpp copasi/sbml/unittests/test000099.cpp.new + mv copasi/sbml/unittests/test000099.cpp.new copasi/sbml/unittests/test000099.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000015.cpp.new copasi/sbml/unittests/test000015.cpp + touch -r copasi/sbml/unittests/test000015.cpp copasi/sbml/unittests/test000015.cpp.new + mv copasi/sbml/unittests/test000015.cpp.new copasi/sbml/unittests/test000015.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000081.cpp.new copasi/sbml/unittests/test000081.cpp + touch -r copasi/sbml/unittests/test000081.cpp copasi/sbml/unittests/test000081.cpp.new + mv copasi/sbml/unittests/test000081.cpp.new copasi/sbml/unittests/test000081.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000076.cpp.new copasi/sbml/unittests/test000076.cpp + touch -r copasi/sbml/unittests/test000076.cpp copasi/sbml/unittests/test000076.cpp.new + mv copasi/sbml/unittests/test000076.cpp.new copasi/sbml/unittests/test000076.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000048.cpp.new copasi/sbml/unittests/test000048.cpp + touch -r copasi/sbml/unittests/test000048.cpp copasi/sbml/unittests/test000048.cpp.new + mv copasi/sbml/unittests/test000048.cpp.new copasi/sbml/unittests/test000048.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000026.cpp.new copasi/sbml/unittests/test000026.cpp + touch -r copasi/sbml/unittests/test000026.cpp copasi/sbml/unittests/test000026.cpp.new + mv copasi/sbml/unittests/test000026.cpp.new copasi/sbml/unittests/test000026.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000104.cpp.new copasi/sbml/unittests/test000104.cpp + touch -r copasi/sbml/unittests/test000104.cpp copasi/sbml/unittests/test000104.cpp.new + mv copasi/sbml/unittests/test000104.cpp.new copasi/sbml/unittests/test000104.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000028.cpp.new copasi/sbml/unittests/test000028.cpp + touch -r copasi/sbml/unittests/test000028.cpp copasi/sbml/unittests/test000028.cpp.new + mv copasi/sbml/unittests/test000028.cpp.new copasi/sbml/unittests/test000028.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000083.cpp.new copasi/sbml/unittests/test000083.cpp + touch -r copasi/sbml/unittests/test000083.cpp copasi/sbml/unittests/test000083.cpp.new + mv copasi/sbml/unittests/test000083.cpp.new copasi/sbml/unittests/test000083.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000011.cpp.new copasi/sbml/unittests/test000011.cpp + touch -r copasi/sbml/unittests/test000011.cpp copasi/sbml/unittests/test000011.cpp.new + mv copasi/sbml/unittests/test000011.cpp.new copasi/sbml/unittests/test000011.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000069.cpp.new copasi/sbml/unittests/test000069.cpp + touch -r copasi/sbml/unittests/test000069.cpp copasi/sbml/unittests/test000069.cpp.new + mv copasi/sbml/unittests/test000069.cpp.new copasi/sbml/unittests/test000069.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000101.cpp.new copasi/sbml/unittests/test000101.cpp + touch -r copasi/sbml/unittests/test000101.cpp copasi/sbml/unittests/test000101.cpp.new + mv copasi/sbml/unittests/test000101.cpp.new copasi/sbml/unittests/test000101.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000097.cpp.new copasi/sbml/unittests/test000097.cpp + touch -r copasi/sbml/unittests/test000097.cpp copasi/sbml/unittests/test000097.cpp.new + mv copasi/sbml/unittests/test000097.cpp.new copasi/sbml/unittests/test000097.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000047.cpp.new copasi/sbml/unittests/test000047.cpp + touch -r copasi/sbml/unittests/test000047.cpp copasi/sbml/unittests/test000047.cpp.new + mv copasi/sbml/unittests/test000047.cpp.new copasi/sbml/unittests/test000047.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000044.cpp.new copasi/sbml/unittests/test000044.cpp + touch -r copasi/sbml/unittests/test000044.cpp copasi/sbml/unittests/test000044.cpp.new + mv copasi/sbml/unittests/test000044.cpp.new copasi/sbml/unittests/test000044.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000063.cpp.new copasi/sbml/unittests/test000063.cpp + touch -r copasi/sbml/unittests/test000063.cpp copasi/sbml/unittests/test000063.cpp.new + mv copasi/sbml/unittests/test000063.cpp.new copasi/sbml/unittests/test000063.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000064.cpp.new copasi/sbml/unittests/test000064.cpp + touch -r copasi/sbml/unittests/test000064.cpp copasi/sbml/unittests/test000064.cpp.new + mv copasi/sbml/unittests/test000064.cpp.new copasi/sbml/unittests/test000064.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000007.cpp.new copasi/sbml/unittests/test000007.cpp + touch -r copasi/sbml/unittests/test000007.cpp copasi/sbml/unittests/test000007.cpp.new + mv copasi/sbml/unittests/test000007.cpp.new copasi/sbml/unittests/test000007.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test.cpp.new copasi/sbml/unittests/test.cpp + touch -r copasi/sbml/unittests/test.cpp copasi/sbml/unittests/test.cpp.new + mv copasi/sbml/unittests/test.cpp.new copasi/sbml/unittests/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000056.cpp.new copasi/sbml/unittests/test000056.cpp + touch -r copasi/sbml/unittests/test000056.cpp copasi/sbml/unittests/test000056.cpp.new + mv copasi/sbml/unittests/test000056.cpp.new copasi/sbml/unittests/test000056.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000012.cpp.new copasi/sbml/unittests/test000012.cpp + touch -r copasi/sbml/unittests/test000012.cpp copasi/sbml/unittests/test000012.cpp.new + mv copasi/sbml/unittests/test000012.cpp.new copasi/sbml/unittests/test000012.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000078.cpp.new copasi/sbml/unittests/test000078.cpp + touch -r copasi/sbml/unittests/test000078.cpp copasi/sbml/unittests/test000078.cpp.new + mv copasi/sbml/unittests/test000078.cpp.new copasi/sbml/unittests/test000078.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000049.cpp.new copasi/sbml/unittests/test000049.cpp + touch -r copasi/sbml/unittests/test000049.cpp copasi/sbml/unittests/test000049.cpp.new + mv copasi/sbml/unittests/test000049.cpp.new copasi/sbml/unittests/test000049.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000040.cpp.new copasi/sbml/unittests/test000040.cpp + touch -r copasi/sbml/unittests/test000040.cpp copasi/sbml/unittests/test000040.cpp.new + mv copasi/sbml/unittests/test000040.cpp.new copasi/sbml/unittests/test000040.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000053.cpp.new copasi/sbml/unittests/test000053.cpp + touch -r copasi/sbml/unittests/test000053.cpp copasi/sbml/unittests/test000053.cpp.new + mv copasi/sbml/unittests/test000053.cpp.new copasi/sbml/unittests/test000053.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000070.cpp.new copasi/sbml/unittests/test000070.cpp + touch -r copasi/sbml/unittests/test000070.cpp copasi/sbml/unittests/test000070.cpp.new + mv copasi/sbml/unittests/test000070.cpp.new copasi/sbml/unittests/test000070.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000022.cpp.new copasi/sbml/unittests/test000022.cpp + touch -r copasi/sbml/unittests/test000022.cpp copasi/sbml/unittests/test000022.cpp.new + mv copasi/sbml/unittests/test000022.cpp.new copasi/sbml/unittests/test000022.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000050.cpp.new copasi/sbml/unittests/test000050.cpp + touch -r copasi/sbml/unittests/test000050.cpp copasi/sbml/unittests/test000050.cpp.new + mv copasi/sbml/unittests/test000050.cpp.new copasi/sbml/unittests/test000050.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000002.cpp.new copasi/sbml/unittests/test000002.cpp + touch -r copasi/sbml/unittests/test000002.cpp copasi/sbml/unittests/test000002.cpp.new + mv copasi/sbml/unittests/test000002.cpp.new copasi/sbml/unittests/test000002.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000077.cpp.new copasi/sbml/unittests/test000077.cpp + touch -r copasi/sbml/unittests/test000077.cpp copasi/sbml/unittests/test000077.cpp.new + mv copasi/sbml/unittests/test000077.cpp.new copasi/sbml/unittests/test000077.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000023.cpp.new copasi/sbml/unittests/test000023.cpp + touch -r copasi/sbml/unittests/test000023.cpp copasi/sbml/unittests/test000023.cpp.new + mv copasi/sbml/unittests/test000023.cpp.new copasi/sbml/unittests/test000023.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000004.cpp.new copasi/sbml/unittests/test000004.cpp + touch -r copasi/sbml/unittests/test000004.cpp copasi/sbml/unittests/test000004.cpp.new + mv copasi/sbml/unittests/test000004.cpp.new copasi/sbml/unittests/test000004.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000038.cpp.new copasi/sbml/unittests/test000038.cpp + touch -r copasi/sbml/unittests/test000038.cpp copasi/sbml/unittests/test000038.cpp.new + mv copasi/sbml/unittests/test000038.cpp.new copasi/sbml/unittests/test000038.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000019.cpp.new copasi/sbml/unittests/test000019.cpp + touch -r copasi/sbml/unittests/test000019.cpp copasi/sbml/unittests/test000019.cpp.new + mv copasi/sbml/unittests/test000019.cpp.new copasi/sbml/unittests/test000019.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000009.cpp.new copasi/sbml/unittests/test000009.cpp + touch -r copasi/sbml/unittests/test000009.cpp copasi/sbml/unittests/test000009.cpp.new + mv copasi/sbml/unittests/test000009.cpp.new copasi/sbml/unittests/test000009.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000062.cpp.new copasi/sbml/unittests/test000062.cpp + touch -r copasi/sbml/unittests/test000062.cpp copasi/sbml/unittests/test000062.cpp.new + mv copasi/sbml/unittests/test000062.cpp.new copasi/sbml/unittests/test000062.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000096.cpp.new copasi/sbml/unittests/test000096.cpp + touch -r copasi/sbml/unittests/test000096.cpp copasi/sbml/unittests/test000096.cpp.new + mv copasi/sbml/unittests/test000096.cpp.new copasi/sbml/unittests/test000096.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000029.cpp.new copasi/sbml/unittests/test000029.cpp + touch -r copasi/sbml/unittests/test000029.cpp copasi/sbml/unittests/test000029.cpp.new + mv copasi/sbml/unittests/test000029.cpp.new copasi/sbml/unittests/test000029.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000055.cpp.new copasi/sbml/unittests/test000055.cpp + touch -r copasi/sbml/unittests/test000055.cpp copasi/sbml/unittests/test000055.cpp.new + mv copasi/sbml/unittests/test000055.cpp.new copasi/sbml/unittests/test000055.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000041.cpp.new copasi/sbml/unittests/test000041.cpp + touch -r copasi/sbml/unittests/test000041.cpp copasi/sbml/unittests/test000041.cpp.new + mv copasi/sbml/unittests/test000041.cpp.new copasi/sbml/unittests/test000041.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000035.cpp.new copasi/sbml/unittests/test000035.cpp + touch -r copasi/sbml/unittests/test000035.cpp copasi/sbml/unittests/test000035.cpp.new + mv copasi/sbml/unittests/test000035.cpp.new copasi/sbml/unittests/test000035.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000091.cpp.new copasi/sbml/unittests/test000091.cpp + touch -r copasi/sbml/unittests/test000091.cpp copasi/sbml/unittests/test000091.cpp.new + mv copasi/sbml/unittests/test000091.cpp.new copasi/sbml/unittests/test000091.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000058.cpp.new copasi/sbml/unittests/test000058.cpp + touch -r copasi/sbml/unittests/test000058.cpp copasi/sbml/unittests/test000058.cpp.new + mv copasi/sbml/unittests/test000058.cpp.new copasi/sbml/unittests/test000058.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000033.cpp.new copasi/sbml/unittests/test000033.cpp + touch -r copasi/sbml/unittests/test000033.cpp copasi/sbml/unittests/test000033.cpp.new + mv copasi/sbml/unittests/test000033.cpp.new copasi/sbml/unittests/test000033.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000075.cpp.new copasi/sbml/unittests/test000075.cpp + touch -r copasi/sbml/unittests/test000075.cpp copasi/sbml/unittests/test000075.cpp.new + mv copasi/sbml/unittests/test000075.cpp.new copasi/sbml/unittests/test000075.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000093.cpp.new copasi/sbml/unittests/test000093.cpp + touch -r copasi/sbml/unittests/test000093.cpp copasi/sbml/unittests/test000093.cpp.new + mv copasi/sbml/unittests/test000093.cpp.new copasi/sbml/unittests/test000093.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000057.cpp.new copasi/sbml/unittests/test000057.cpp + touch -r copasi/sbml/unittests/test000057.cpp copasi/sbml/unittests/test000057.cpp.new + mv copasi/sbml/unittests/test000057.cpp.new copasi/sbml/unittests/test000057.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000079.cpp.new copasi/sbml/unittests/test000079.cpp + touch -r copasi/sbml/unittests/test000079.cpp copasi/sbml/unittests/test000079.cpp.new + mv copasi/sbml/unittests/test000079.cpp.new copasi/sbml/unittests/test000079.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000036.cpp.new copasi/sbml/unittests/test000036.cpp + touch -r copasi/sbml/unittests/test000036.cpp copasi/sbml/unittests/test000036.cpp.new + mv copasi/sbml/unittests/test000036.cpp.new copasi/sbml/unittests/test000036.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000037.cpp.new copasi/sbml/unittests/test000037.cpp + touch -r copasi/sbml/unittests/test000037.cpp copasi/sbml/unittests/test000037.cpp.new + mv copasi/sbml/unittests/test000037.cpp.new copasi/sbml/unittests/test000037.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000017.cpp.new copasi/sbml/unittests/test000017.cpp + touch -r copasi/sbml/unittests/test000017.cpp copasi/sbml/unittests/test000017.cpp.new + mv copasi/sbml/unittests/test000017.cpp.new copasi/sbml/unittests/test000017.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000013.cpp.new copasi/sbml/unittests/test000013.cpp + touch -r copasi/sbml/unittests/test000013.cpp copasi/sbml/unittests/test000013.cpp.new + mv copasi/sbml/unittests/test000013.cpp.new copasi/sbml/unittests/test000013.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000072.cpp.new copasi/sbml/unittests/test000072.cpp + touch -r copasi/sbml/unittests/test000072.cpp copasi/sbml/unittests/test000072.cpp.new + mv copasi/sbml/unittests/test000072.cpp.new copasi/sbml/unittests/test000072.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000061.cpp.new copasi/sbml/unittests/test000061.cpp + touch -r copasi/sbml/unittests/test000061.cpp copasi/sbml/unittests/test000061.cpp.new + mv copasi/sbml/unittests/test000061.cpp.new copasi/sbml/unittests/test000061.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000043.cpp.new copasi/sbml/unittests/test000043.cpp + touch -r copasi/sbml/unittests/test000043.cpp copasi/sbml/unittests/test000043.cpp.new + mv copasi/sbml/unittests/test000043.cpp.new copasi/sbml/unittests/test000043.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000039.cpp.new copasi/sbml/unittests/test000039.cpp + touch -r copasi/sbml/unittests/test000039.cpp copasi/sbml/unittests/test000039.cpp.new + mv copasi/sbml/unittests/test000039.cpp.new copasi/sbml/unittests/test000039.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/utilities.cpp.new copasi/sbml/unittests/utilities.cpp + touch -r copasi/sbml/unittests/utilities.cpp copasi/sbml/unittests/utilities.cpp.new + mv copasi/sbml/unittests/utilities.cpp.new copasi/sbml/unittests/utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000087.cpp.new copasi/sbml/unittests/test000087.cpp + touch -r copasi/sbml/unittests/test000087.cpp copasi/sbml/unittests/test000087.cpp.new + mv copasi/sbml/unittests/test000087.cpp.new copasi/sbml/unittests/test000087.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000030.cpp.new copasi/sbml/unittests/test000030.cpp + touch -r copasi/sbml/unittests/test000030.cpp copasi/sbml/unittests/test000030.cpp.new + mv copasi/sbml/unittests/test000030.cpp.new copasi/sbml/unittests/test000030.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000046.cpp.new copasi/sbml/unittests/test000046.cpp + touch -r copasi/sbml/unittests/test000046.cpp copasi/sbml/unittests/test000046.cpp.new + mv copasi/sbml/unittests/test000046.cpp.new copasi/sbml/unittests/test000046.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000032.cpp.new copasi/sbml/unittests/test000032.cpp + touch -r copasi/sbml/unittests/test000032.cpp copasi/sbml/unittests/test000032.cpp.new + mv copasi/sbml/unittests/test000032.cpp.new copasi/sbml/unittests/test000032.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000027.cpp.new copasi/sbml/unittests/test000027.cpp + touch -r copasi/sbml/unittests/test000027.cpp copasi/sbml/unittests/test000027.cpp.new + mv copasi/sbml/unittests/test000027.cpp.new copasi/sbml/unittests/test000027.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000052.cpp.new copasi/sbml/unittests/test000052.cpp + touch -r copasi/sbml/unittests/test000052.cpp copasi/sbml/unittests/test000052.cpp.new + mv copasi/sbml/unittests/test000052.cpp.new copasi/sbml/unittests/test000052.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000073.cpp.new copasi/sbml/unittests/test000073.cpp + touch -r copasi/sbml/unittests/test000073.cpp copasi/sbml/unittests/test000073.cpp.new + mv copasi/sbml/unittests/test000073.cpp.new copasi/sbml/unittests/test000073.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000086.cpp.new copasi/sbml/unittests/test000086.cpp + touch -r copasi/sbml/unittests/test000086.cpp copasi/sbml/unittests/test000086.cpp.new + mv copasi/sbml/unittests/test000086.cpp.new copasi/sbml/unittests/test000086.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000090.cpp.new copasi/sbml/unittests/test000090.cpp + touch -r copasi/sbml/unittests/test000090.cpp copasi/sbml/unittests/test000090.cpp.new + mv copasi/sbml/unittests/test000090.cpp.new copasi/sbml/unittests/test000090.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000054.cpp.new copasi/sbml/unittests/test000054.cpp + touch -r copasi/sbml/unittests/test000054.cpp copasi/sbml/unittests/test000054.cpp.new + mv copasi/sbml/unittests/test000054.cpp.new copasi/sbml/unittests/test000054.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000074.cpp.new copasi/sbml/unittests/test000074.cpp + touch -r copasi/sbml/unittests/test000074.cpp copasi/sbml/unittests/test000074.cpp.new + mv copasi/sbml/unittests/test000074.cpp.new copasi/sbml/unittests/test000074.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000008.cpp.new copasi/sbml/unittests/test000008.cpp + touch -r copasi/sbml/unittests/test000008.cpp copasi/sbml/unittests/test000008.cpp.new + mv copasi/sbml/unittests/test000008.cpp.new copasi/sbml/unittests/test000008.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLImporter.cpp.new copasi/sbml/SBMLImporter.cpp + touch -r copasi/sbml/SBMLImporter.cpp copasi/sbml/SBMLImporter.cpp.new + mv copasi/sbml/SBMLImporter.cpp.new copasi/sbml/SBMLImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/ConverterASTNode.cpp.new copasi/sbml/ConverterASTNode.cpp + touch -r copasi/sbml/ConverterASTNode.cpp copasi/sbml/ConverterASTNode.cpp.new + mv copasi/sbml/ConverterASTNode.cpp.new copasi/sbml/ConverterASTNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new copasi/sbmlunit/Expression2PresentationMMLUnits.cpp + touch -r copasi/sbmlunit/Expression2PresentationMMLUnits.cpp copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new + mv copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new copasi/sbmlunit/Expression2PresentationMMLUnits.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/CSBMLunitInterface.cpp.new copasi/sbmlunit/CSBMLunitInterface.cpp + touch -r copasi/sbmlunit/CSBMLunitInterface.cpp copasi/sbmlunit/CSBMLunitInterface.cpp.new + mv copasi/sbmlunit/CSBMLunitInterface.cpp.new copasi/sbmlunit/CSBMLunitInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/Expression2PresentationMML.cpp.new copasi/sbmlunit/Expression2PresentationMML.cpp + touch -r copasi/sbmlunit/Expression2PresentationMML.cpp copasi/sbmlunit/Expression2PresentationMML.cpp.new + mv copasi/sbmlunit/Expression2PresentationMML.cpp.new copasi/sbmlunit/Expression2PresentationMML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/CSBMLunit.cpp.new copasi/sbmlunit/CSBMLunit.cpp + touch -r copasi/sbmlunit/CSBMLunit.cpp copasi/sbmlunit/CSBMLunit.cpp.new + mv copasi/sbmlunit/CSBMLunit.cpp.new copasi/sbmlunit/CSBMLunit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CDerive.cpp.new copasi/function/CDerive.cpp + touch -r copasi/function/CDerive.cpp copasi/function/CDerive.cpp.new + mv copasi/function/CDerive.cpp.new copasi/function/CDerive.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeStructure.cpp.new copasi/function/CEvaluationNodeStructure.cpp + touch -r copasi/function/CEvaluationNodeStructure.cpp copasi/function/CEvaluationNodeStructure.cpp.new + mv copasi/function/CEvaluationNodeStructure.cpp.new copasi/function/CEvaluationNodeStructure.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeWhiteSpace.cpp.new copasi/function/CEvaluationNodeWhiteSpace.cpp + touch -r copasi/function/CEvaluationNodeWhiteSpace.cpp copasi/function/CEvaluationNodeWhiteSpace.cpp.new + mv copasi/function/CEvaluationNodeWhiteSpace.cpp.new copasi/function/CEvaluationNodeWhiteSpace.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeCall.cpp.new copasi/function/CEvaluationNodeCall.cpp + touch -r copasi/function/CEvaluationNodeCall.cpp copasi/function/CEvaluationNodeCall.cpp.new + mv copasi/function/CEvaluationNodeCall.cpp.new copasi/function/CEvaluationNodeCall.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunction.cpp.new copasi/function/CFunction.cpp + touch -r copasi/function/CFunction.cpp copasi/function/CFunction.cpp.new + mv copasi/function/CFunction.cpp.new copasi/function/CFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CNodeK.cpp.new copasi/function/CNodeK.cpp + touch -r copasi/function/CNodeK.cpp copasi/function/CNodeK.cpp.new + mv copasi/function/CNodeK.cpp.new copasi/function/CNodeK.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationTree.cpp.new copasi/function/CEvaluationTree.cpp + touch -r copasi/function/CEvaluationTree.cpp copasi/function/CEvaluationTree.cpp.new + mv copasi/function/CEvaluationTree.cpp.new copasi/function/CEvaluationTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeLogical.cpp.new copasi/function/CEvaluationNodeLogical.cpp + touch -r copasi/function/CEvaluationNodeLogical.cpp copasi/function/CEvaluationNodeLogical.cpp.new + mv copasi/function/CEvaluationNodeLogical.cpp.new copasi/function/CEvaluationNodeLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeOperator.cpp.new copasi/function/CEvaluationNodeOperator.cpp + touch -r copasi/function/CEvaluationNodeOperator.cpp copasi/function/CEvaluationNodeOperator.cpp.new + mv copasi/function/CEvaluationNodeOperator.cpp.new copasi/function/CEvaluationNodeOperator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationParser_yacc.cpp.new copasi/function/CEvaluationParser_yacc.cpp + touch -r copasi/function/CEvaluationParser_yacc.cpp copasi/function/CEvaluationParser_yacc.cpp.new + mv copasi/function/CEvaluationParser_yacc.cpp.new copasi/function/CEvaluationParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeFunction.cpp.new copasi/function/CEvaluationNodeFunction.cpp + touch -r copasi/function/CEvaluationNodeFunction.cpp copasi/function/CEvaluationNodeFunction.cpp.new + mv copasi/function/CEvaluationNodeFunction.cpp.new copasi/function/CEvaluationNodeFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionDB.cpp.new copasi/function/CFunctionDB.cpp + touch -r copasi/function/CFunctionDB.cpp copasi/function/CFunctionDB.cpp.new + mv copasi/function/CFunctionDB.cpp.new copasi/function/CFunctionDB.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CMassAction.cpp.new copasi/function/CMassAction.cpp + touch -r copasi/function/CMassAction.cpp copasi/function/CMassAction.cpp.new + mv copasi/function/CMassAction.cpp.new copasi/function/CMassAction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeNumber.cpp.new copasi/function/CEvaluationNodeNumber.cpp + touch -r copasi/function/CEvaluationNodeNumber.cpp copasi/function/CEvaluationNodeNumber.cpp.new + mv copasi/function/CEvaluationNodeNumber.cpp.new copasi/function/CEvaluationNodeNumber.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeVariable.cpp.new copasi/function/CEvaluationNodeVariable.cpp + touch -r copasi/function/CEvaluationNodeVariable.cpp copasi/function/CEvaluationNodeVariable.cpp.new + mv copasi/function/CEvaluationNodeVariable.cpp.new copasi/function/CEvaluationNodeVariable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeConstant.cpp.new copasi/function/CEvaluationNodeConstant.cpp + touch -r copasi/function/CEvaluationNodeConstant.cpp copasi/function/CEvaluationNodeConstant.cpp.new + mv copasi/function/CEvaluationNodeConstant.cpp.new copasi/function/CEvaluationNodeConstant.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeChoice.cpp.new copasi/function/CEvaluationNodeChoice.cpp + touch -r copasi/function/CEvaluationNodeChoice.cpp copasi/function/CEvaluationNodeChoice.cpp.new + mv copasi/function/CEvaluationNodeChoice.cpp.new copasi/function/CEvaluationNodeChoice.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CCallParameters.cpp.new copasi/function/CCallParameters.cpp + touch -r copasi/function/CCallParameters.cpp copasi/function/CCallParameters.cpp.new + mv copasi/function/CCallParameters.cpp.new copasi/function/CCallParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CExpression.cpp.new copasi/function/CExpression.cpp + touch -r copasi/function/CExpression.cpp copasi/function/CExpression.cpp.new + mv copasi/function/CExpression.cpp.new copasi/function/CExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationLexer_lex.cpp.new copasi/function/CEvaluationLexer_lex.cpp + touch -r copasi/function/CEvaluationLexer_lex.cpp copasi/function/CEvaluationLexer_lex.cpp.new + mv copasi/function/CEvaluationLexer_lex.cpp.new copasi/function/CEvaluationLexer_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNode.cpp.new copasi/function/CEvaluationNode.cpp + touch -r copasi/function/CEvaluationNode.cpp copasi/function/CEvaluationNode.cpp.new + mv copasi/function/CEvaluationNode.cpp.new copasi/function/CEvaluationNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeVector.cpp.new copasi/function/CEvaluationNodeVector.cpp + touch -r copasi/function/CEvaluationNodeVector.cpp copasi/function/CEvaluationNodeVector.cpp.new + mv copasi/function/CEvaluationNodeVector.cpp.new copasi/function/CEvaluationNodeVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionParameters.cpp.new copasi/function/CFunctionParameters.cpp + touch -r copasi/function/CFunctionParameters.cpp copasi/function/CFunctionParameters.cpp.new + mv copasi/function/CFunctionParameters.cpp.new copasi/function/CFunctionParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeDelay.cpp.new copasi/function/CEvaluationNodeDelay.cpp + touch -r copasi/function/CEvaluationNodeDelay.cpp copasi/function/CEvaluationNodeDelay.cpp.new + mv copasi/function/CEvaluationNodeDelay.cpp.new copasi/function/CEvaluationNodeDelay.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeUnit.cpp.new copasi/function/CEvaluationNodeUnit.cpp + touch -r copasi/function/CEvaluationNodeUnit.cpp copasi/function/CEvaluationNodeUnit.cpp.new + mv copasi/function/CEvaluationNodeUnit.cpp.new copasi/function/CEvaluationNodeUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionParameter.cpp.new copasi/function/CFunctionParameter.cpp + touch -r copasi/function/CFunctionParameter.cpp copasi/function/CFunctionParameter.cpp.new + mv copasi/function/CFunctionParameter.cpp.new copasi/function/CFunctionParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionAnalyzer.cpp.new copasi/function/CFunctionAnalyzer.cpp + touch -r copasi/function/CFunctionAnalyzer.cpp copasi/function/CFunctionAnalyzer.cpp.new + mv copasi/function/CFunctionAnalyzer.cpp.new copasi/function/CFunctionAnalyzer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeObject.cpp.new copasi/function/CEvaluationNodeObject.cpp + touch -r copasi/function/CEvaluationNodeObject.cpp copasi/function/CEvaluationNodeObject.cpp.new + mv copasi/function/CEvaluationNodeObject.cpp.new copasi/function/CEvaluationNodeObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CKinFunction.cpp.new copasi/function/CKinFunction.cpp + touch -r copasi/function/CKinFunction.cpp copasi/function/CKinFunction.cpp.new + mv copasi/function/CKinFunction.cpp.new copasi/function/CKinFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotColors.cpp.new copasi/plot/CPlotColors.cpp + touch -r copasi/plot/CPlotColors.cpp copasi/plot/CPlotColors.cpp.new + mv copasi/plot/CPlotColors.cpp.new copasi/plot/CPlotColors.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotSpecification.cpp.new copasi/plot/CPlotSpecification.cpp + touch -r copasi/plot/CPlotSpecification.cpp copasi/plot/CPlotSpecification.cpp.new + mv copasi/plot/CPlotSpecification.cpp.new copasi/plot/CPlotSpecification.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotItem.cpp.new copasi/plot/CPlotItem.cpp + touch -r copasi/plot/CPlotItem.cpp copasi/plot/CPlotItem.cpp.new + mv copasi/plot/CPlotItem.cpp.new copasi/plot/CPlotItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/COutputDefinitionVector.cpp.new copasi/plot/COutputDefinitionVector.cpp + touch -r copasi/plot/COutputDefinitionVector.cpp copasi/plot/COutputDefinitionVector.cpp.new + mv copasi/plot/COutputDefinitionVector.cpp.new copasi/plot/COutputDefinitionVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTableCell.cpp.new copasi/utilities/CTableCell.cpp + touch -r copasi/utilities/CTableCell.cpp copasi/utilities/CTableCell.cpp.new + mv copasi/utilities/CTableCell.cpp.new copasi/utilities/CTableCell.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CValidity.cpp.new copasi/utilities/CValidity.cpp + touch -r copasi/utilities/CValidity.cpp copasi/utilities/CValidity.cpp.new + mv copasi/utilities/CValidity.cpp.new copasi/utilities/CValidity.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CSlider.cpp.new copasi/utilities/CSlider.cpp + touch -r copasi/utilities/CSlider.cpp copasi/utilities/CSlider.cpp.new + mv copasi/utilities/CSlider.cpp.new copasi/utilities/CSlider.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CReadConfig.cpp.new copasi/utilities/CReadConfig.cpp + touch -r copasi/utilities/CReadConfig.cpp copasi/utilities/CReadConfig.cpp.new + mv copasi/utilities/CReadConfig.cpp.new copasi/utilities/CReadConfig.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/utility.cpp.new copasi/utilities/utility.cpp + touch -r copasi/utilities/utility.cpp copasi/utilities/utility.cpp.new + mv copasi/utilities/utility.cpp.new copasi/utilities/utility.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CDirEntry.cpp.new copasi/utilities/CDirEntry.cpp + touch -r copasi/utilities/CDirEntry.cpp copasi/utilities/CDirEntry.cpp.new + mv copasi/utilities/CDirEntry.cpp.new copasi/utilities/CDirEntry.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser_yacc.cpp.new copasi/utilities/CUnitParser_yacc.cpp + touch -r copasi/utilities/CUnitParser_yacc.cpp copasi/utilities/CUnitParser_yacc.cpp.new + mv copasi/utilities/CUnitParser_yacc.cpp.new copasi/utilities/CUnitParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitValidator.cpp.new copasi/utilities/CUnitValidator.cpp + touch -r copasi/utilities/CUnitValidator.cpp copasi/utilities/CUnitValidator.cpp.new + mv copasi/utilities/CUnitValidator.cpp.new copasi/utilities/CUnitValidator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CBrent.cpp.new copasi/utilities/CBrent.cpp + touch -r copasi/utilities/CBrent.cpp copasi/utilities/CBrent.cpp.new + mv copasi/utilities/CBrent.cpp.new copasi/utilities/CBrent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiProblem.cpp.new copasi/utilities/CCopasiProblem.cpp + touch -r copasi/utilities/CCopasiProblem.cpp copasi/utilities/CCopasiProblem.cpp.new + mv copasi/utilities/CCopasiProblem.cpp.new copasi/utilities/CCopasiProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CopasiTime.cpp.new copasi/utilities/CopasiTime.cpp + touch -r copasi/utilities/CopasiTime.cpp copasi/utilities/CopasiTime.cpp.new + mv copasi/utilities/CopasiTime.cpp.new copasi/utilities/CopasiTime.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CIndexedPriorityQueue.cpp.new copasi/utilities/CIndexedPriorityQueue.cpp + touch -r copasi/utilities/CIndexedPriorityQueue.cpp copasi/utilities/CIndexedPriorityQueue.cpp.new + mv copasi/utilities/CIndexedPriorityQueue.cpp.new copasi/utilities/CIndexedPriorityQueue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiException.cpp.new copasi/utilities/CCopasiException.cpp + touch -r copasi/utilities/CCopasiException.cpp copasi/utilities/CCopasiException.cpp.new + mv copasi/utilities/CCopasiException.cpp.new copasi/utilities/CCopasiException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CBaseUnit.cpp.new copasi/utilities/CBaseUnit.cpp + touch -r copasi/utilities/CBaseUnit.cpp copasi/utilities/CBaseUnit.cpp.new + mv copasi/utilities/CBaseUnit.cpp.new copasi/utilities/CBaseUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser.cpp.new copasi/utilities/CUnitParser.cpp + touch -r copasi/utilities/CUnitParser.cpp copasi/utilities/CUnitParser.cpp.new + mv copasi/utilities/CUnitParser.cpp.new copasi/utilities/CUnitParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTaskFactory.cpp.new copasi/utilities/CTaskFactory.cpp + touch -r copasi/utilities/CTaskFactory.cpp copasi/utilities/CTaskFactory.cpp.new + mv copasi/utilities/CTaskFactory.cpp.new copasi/utilities/CTaskFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiParameter.cpp.new copasi/utilities/CCopasiParameter.cpp + touch -r copasi/utilities/CCopasiParameter.cpp copasi/utilities/CCopasiParameter.cpp.new + mv copasi/utilities/CCopasiParameter.cpp.new copasi/utilities/CCopasiParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiMethod.cpp.new copasi/utilities/CCopasiMethod.cpp + touch -r copasi/utilities/CCopasiMethod.cpp copasi/utilities/CCopasiMethod.cpp.new + mv copasi/utilities/CCopasiMethod.cpp.new copasi/utilities/CCopasiMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnit.cpp.new copasi/utilities/CUnit.cpp + touch -r copasi/utilities/CUnit.cpp copasi/utilities/CUnit.cpp.new + mv copasi/utilities/CUnit.cpp.new copasi/utilities/CUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CDependencyGraph.cpp.new copasi/utilities/CDependencyGraph.cpp + touch -r copasi/utilities/CDependencyGraph.cpp copasi/utilities/CDependencyGraph.cpp.new + mv copasi/utilities/CDependencyGraph.cpp.new copasi/utilities/CDependencyGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CValidatedUnit.cpp.new copasi/utilities/CValidatedUnit.cpp + touch -r copasi/utilities/CValidatedUnit.cpp copasi/utilities/CValidatedUnit.cpp.new + mv copasi/utilities/CValidatedUnit.cpp.new copasi/utilities/CValidatedUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CProcessReport.cpp.new copasi/utilities/CProcessReport.cpp + touch -r copasi/utilities/CProcessReport.cpp copasi/utilities/CProcessReport.cpp.new + mv copasi/utilities/CProcessReport.cpp.new copasi/utilities/CProcessReport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitComponent.cpp.new copasi/utilities/CUnitComponent.cpp + touch -r copasi/utilities/CUnitComponent.cpp copasi/utilities/CUnitComponent.cpp.new + mv copasi/utilities/CUnitComponent.cpp.new copasi/utilities/CUnitComponent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser_lex.cpp.new copasi/utilities/CUnitParser_lex.cpp + touch -r copasi/utilities/CUnitParser_lex.cpp copasi/utilities/CUnitParser_lex.cpp.new + mv copasi/utilities/CUnitParser_lex.cpp.new copasi/utilities/CUnitParser_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiTaskStatus.cpp.new copasi/utilities/CCopasiTaskStatus.cpp + touch -r copasi/utilities/CCopasiTaskStatus.cpp copasi/utilities/CCopasiTaskStatus.cpp.new + mv copasi/utilities/CCopasiTaskStatus.cpp.new copasi/utilities/CCopasiTaskStatus.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CSparseMatrix.cpp.new copasi/utilities/CSparseMatrix.cpp + touch -r copasi/utilities/CSparseMatrix.cpp copasi/utilities/CSparseMatrix.cpp.new + mv copasi/utilities/CSparseMatrix.cpp.new copasi/utilities/CSparseMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CluX.cpp.new copasi/utilities/CluX.cpp + touch -r copasi/utilities/CluX.cpp copasi/utilities/CluX.cpp.new + mv copasi/utilities/CluX.cpp.new copasi/utilities/CluX.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitDefinition.cpp.new copasi/utilities/CUnitDefinition.cpp + touch -r copasi/utilities/CUnitDefinition.cpp copasi/utilities/CUnitDefinition.cpp.new + mv copasi/utilities/CUnitDefinition.cpp.new copasi/utilities/CUnitDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiTask.cpp.new copasi/utilities/CCopasiTask.cpp + touch -r copasi/utilities/CCopasiTask.cpp copasi/utilities/CCopasiTask.cpp.new + mv copasi/utilities/CCopasiTask.cpp.new copasi/utilities/CCopasiTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTaskEnum.cpp.new copasi/utilities/CTaskEnum.cpp + touch -r copasi/utilities/CTaskEnum.cpp copasi/utilities/CTaskEnum.cpp.new + mv copasi/utilities/CTaskEnum.cpp.new copasi/utilities/CTaskEnum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiMessage.cpp.new copasi/utilities/CCopasiMessage.cpp + touch -r copasi/utilities/CCopasiMessage.cpp copasi/utilities/CCopasiMessage.cpp.new + mv copasi/utilities/CCopasiMessage.cpp.new copasi/utilities/CCopasiMessage.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiParameterGroup.cpp.new copasi/utilities/CCopasiParameterGroup.cpp + touch -r copasi/utilities/CCopasiParameterGroup.cpp copasi/utilities/CCopasiParameterGroup.cpp.new + mv copasi/utilities/CCopasiParameterGroup.cpp.new copasi/utilities/CCopasiParameterGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CLinkMatrix.cpp.new copasi/utilities/CLinkMatrix.cpp + touch -r copasi/utilities/CLinkMatrix.cpp copasi/utilities/CLinkMatrix.cpp.new + mv copasi/utilities/CLinkMatrix.cpp.new copasi/utilities/CLinkMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CVersion.cpp.new copasi/utilities/CVersion.cpp + touch -r copasi/utilities/CVersion.cpp copasi/utilities/CVersion.cpp.new + mv copasi/utilities/CVersion.cpp.new copasi/utilities/CVersion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CParameterEstimationUtils.cpp.new copasi/utilities/CParameterEstimationUtils.cpp + touch -r copasi/utilities/CParameterEstimationUtils.cpp copasi/utilities/CParameterEstimationUtils.cpp.new + mv copasi/utilities/CParameterEstimationUtils.cpp.new copasi/utilities/CParameterEstimationUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitDefinitionDB.cpp.new copasi/utilities/CUnitDefinitionDB.cpp + touch -r copasi/utilities/CUnitDefinitionDB.cpp copasi/utilities/CUnitDefinitionDB.cpp.new + mv copasi/utilities/CUnitDefinitionDB.cpp.new copasi/utilities/CUnitDefinitionDB.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFluxModeDM.cpp.new copasi/UI/CQFluxModeDM.cpp + touch -r copasi/UI/CQFluxModeDM.cpp copasi/UI/CQFluxModeDM.cpp.new + mv copasi/UI/CQFluxModeDM.cpp.new copasi/UI/CQFluxModeDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetRandom.cpp.new copasi/UI/CScanWidgetRandom.cpp + touch -r copasi/UI/CScanWidgetRandom.cpp copasi/UI/CScanWidgetRandom.cpp.new + mv copasi/UI/CScanWidgetRandom.cpp.new copasi/UI/CScanWidgetRandom.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReactionDM.cpp.new copasi/UI/CQReactionDM.cpp + touch -r copasi/UI/CQReactionDM.cpp copasi/UI/CQReactionDM.cpp.new + mv copasi/UI/CQReactionDM.cpp.new copasi/UI/CQReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTrajectoryWidget.cpp.new copasi/UI/CQTrajectoryWidget.cpp + touch -r copasi/UI/CQTrajectoryWidget.cpp copasi/UI/CQTrajectoryWidget.cpp.new + mv copasi/UI/CQTrajectoryWidget.cpp.new copasi/UI/CQTrajectoryWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/qtUtilities.cpp.new copasi/UI/qtUtilities.cpp + touch -r copasi/UI/qtUtilities.cpp copasi/UI/qtUtilities.cpp.new + mv copasi/UI/qtUtilities.cpp.new copasi/UI/qtUtilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartment.cpp.new copasi/UI/CQCompartment.cpp + touch -r copasi/UI/CQCompartment.cpp copasi/UI/CQCompartment.cpp.new + mv copasi/UI/CQCompartment.cpp.new copasi/UI/CQCompartment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiSelectionWidget.cpp.new copasi/UI/CCopasiSelectionWidget.cpp + touch -r copasi/UI/CCopasiSelectionWidget.cpp copasi/UI/CCopasiSelectionWidget.cpp.new + mv copasi/UI/CCopasiSelectionWidget.cpp.new copasi/UI/CCopasiSelectionWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUndoTester.cpp.new copasi/UI/CQUndoTester.cpp + touch -r copasi/UI/CQUndoTester.cpp copasi/UI/CQUndoTester.cpp.new + mv copasi/UI/CQUndoTester.cpp.new copasi/UI/CQUndoTester.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskThread.cpp.new copasi/UI/CQTaskThread.cpp + touch -r copasi/UI/CQTaskThread.cpp copasi/UI/CQTaskThread.cpp.new + mv copasi/UI/CQTaskThread.cpp.new copasi/UI/CQTaskThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMCAWidget.cpp.new copasi/UI/CQMCAWidget.cpp + touch -r copasi/UI/CQMCAWidget.cpp copasi/UI/CQMCAWidget.cpp.new + mv copasi/UI/CQMCAWidget.cpp.new copasi/UI/CQMCAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExperimentSelection.cpp.new copasi/UI/CQExperimentSelection.cpp + touch -r copasi/UI/CQExperimentSelection.cpp copasi/UI/CQExperimentSelection.cpp.new + mv copasi/UI/CQExperimentSelection.cpp.new copasi/UI/CQExperimentSelection.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/copasiui3window.cpp.new copasi/UI/copasiui3window.cpp + touch -r copasi/UI/copasiui3window.cpp copasi/UI/copasiui3window.cpp.new + mv copasi/UI/copasiui3window.cpp.new copasi/UI/copasiui3window.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDifferentialEquations.cpp.new copasi/UI/CQDifferentialEquations.cpp + touch -r copasi/UI/CQDifferentialEquations.cpp copasi/UI/CQDifferentialEquations.cpp.new + mv copasi/UI/CQDifferentialEquations.cpp.new copasi/UI/CQDifferentialEquations.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSEDMLFileDialog.cpp.new copasi/UI/CQSEDMLFileDialog.cpp + touch -r copasi/UI/CQSEDMLFileDialog.cpp copasi/UI/CQSEDMLFileDialog.cpp.new + mv copasi/UI/CQSEDMLFileDialog.cpp.new copasi/UI/CQSEDMLFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/TaskWidget.cpp.new copasi/UI/TaskWidget.cpp + touch -r copasi/UI/TaskWidget.cpp copasi/UI/TaskWidget.cpp.new + mv copasi/UI/TaskWidget.cpp.new copasi/UI/TaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiPlotSelectionDialog.cpp.new copasi/UI/CCopasiPlotSelectionDialog.cpp + touch -r copasi/UI/CCopasiPlotSelectionDialog.cpp copasi/UI/CCopasiPlotSelectionDialog.cpp.new + mv copasi/UI/CCopasiPlotSelectionDialog.cpp.new copasi/UI/CCopasiPlotSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMatrixDialog.cpp.new copasi/UI/CQMatrixDialog.cpp + touch -r copasi/UI/CQMatrixDialog.cpp copasi/UI/CQMatrixDialog.cpp.new + mv copasi/UI/CQMatrixDialog.cpp.new copasi/UI/CQMatrixDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDM.cpp.new copasi/UI/CQReportDM.cpp + touch -r copasi/UI/CQReportDM.cpp copasi/UI/CQReportDM.cpp.new + mv copasi/UI/CQReportDM.cpp.new copasi/UI/CQReportDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLayoutsDM.cpp.new copasi/UI/CQLayoutsDM.cpp + touch -r copasi/UI/CQLayoutsDM.cpp copasi/UI/CQLayoutsDM.cpp.new + mv copasi/UI/CQLayoutsDM.cpp.new copasi/UI/CQLayoutsDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpeciesWidget.cpp.new copasi/UI/CQSpeciesWidget.cpp + touch -r copasi/UI/CQSpeciesWidget.cpp copasi/UI/CQSpeciesWidget.cpp.new + mv copasi/UI/CQSpeciesWidget.cpp.new copasi/UI/CQSpeciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMSpeciesDM.cpp.new copasi/UI/CQEFMSpeciesDM.cpp + touch -r copasi/UI/CQEFMSpeciesDM.cpp copasi/UI/CQEFMSpeciesDM.cpp.new + mv copasi/UI/CQEFMSpeciesDM.cpp.new copasi/UI/CQEFMSpeciesDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptimizationResult.cpp.new copasi/UI/CQOptimizationResult.cpp + touch -r copasi/UI/CQOptimizationResult.cpp copasi/UI/CQOptimizationResult.cpp.new + mv copasi/UI/CQOptimizationResult.cpp.new copasi/UI/CQOptimizationResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQGlobalQuantitiesWidget.cpp.new copasi/UI/CQGlobalQuantitiesWidget.cpp + touch -r copasi/UI/CQGlobalQuantitiesWidget.cpp copasi/UI/CQGlobalQuantitiesWidget.cpp.new + mv copasi/UI/CQGlobalQuantitiesWidget.cpp.new copasi/UI/CQGlobalQuantitiesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAWidget.cpp.new copasi/UI/CQTSSAWidget.cpp + touch -r copasi/UI/CQTSSAWidget.cpp copasi/UI/CQTSSAWidget.cpp.new + mv copasi/UI/CQTSSAWidget.cpp.new copasi/UI/CQTSSAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentDM.cpp.new copasi/UI/CQCompartmentDM.cpp + touch -r copasi/UI/CQCompartmentDM.cpp copasi/UI/CQCompartmentDM.cpp.new + mv copasi/UI/CQCompartmentDM.cpp.new copasi/UI/CQCompartmentDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUpdatesWidget.cpp.new copasi/UI/CQUpdatesWidget.cpp + touch -r copasi/UI/CQUpdatesWidget.cpp copasi/UI/CQUpdatesWidget.cpp.new + mv copasi/UI/CQUpdatesWidget.cpp.new copasi/UI/CQUpdatesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserWidget.cpp.new copasi/UI/ObjectBrowserWidget.cpp + touch -r copasi/UI/ObjectBrowserWidget.cpp copasi/UI/ObjectBrowserWidget.cpp.new + mv copasi/UI/ObjectBrowserWidget.cpp.new copasi/UI/ObjectBrowserWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanItemData.cpp.new copasi/UI/CScanItemData.cpp + touch -r copasi/UI/CScanItemData.cpp copasi/UI/CScanItemData.cpp.new + mv copasi/UI/CScanItemData.cpp.new copasi/UI/CScanItemData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLNAWidget.cpp.new copasi/UI/CQLNAWidget.cpp + touch -r copasi/UI/CQLNAWidget.cpp copasi/UI/CQLNAWidget.cpp.new + mv copasi/UI/CQLNAWidget.cpp.new copasi/UI/CQLNAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTextDialog.cpp.new copasi/UI/CQTextDialog.cpp + touch -r copasi/UI/CQTextDialog.cpp copasi/UI/CQTextDialog.cpp.new + mv copasi/UI/CQTextDialog.cpp.new copasi/UI/CQTextDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCheckModelWindow.cpp.new copasi/UI/CQCheckModelWindow.cpp + touch -r copasi/UI/CQCheckModelWindow.cpp copasi/UI/CQCheckModelWindow.cpp.new + mv copasi/UI/CQCheckModelWindow.cpp.new copasi/UI/CQCheckModelWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CMCAResultSubwidget.cpp.new copasi/UI/CMCAResultSubwidget.cpp + touch -r copasi/UI/CMCAResultSubwidget.cpp copasi/UI/CMCAResultSubwidget.cpp.new + mv copasi/UI/CMCAResultSubwidget.cpp.new copasi/UI/CMCAResultSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/copasiWidget.cpp.new copasi/UI/copasiWidget.cpp + touch -r copasi/UI/copasiWidget.cpp copasi/UI/copasiWidget.cpp.new + mv copasi/UI/copasiWidget.cpp.new copasi/UI/copasiWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQThread.cpp.new copasi/UI/CQThread.cpp + touch -r copasi/UI/CQThread.cpp copasi/UI/CQThread.cpp.new + mv copasi/UI/CQThread.cpp.new copasi/UI/CQThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskHeaderWidget.cpp.new copasi/UI/CQTaskHeaderWidget.cpp + touch -r copasi/UI/CQTaskHeaderWidget.cpp copasi/UI/CQTaskHeaderWidget.cpp.new + mv copasi/UI/CQTaskHeaderWidget.cpp.new copasi/UI/CQTaskHeaderWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMNetReactionDM.cpp.new copasi/UI/CQEFMNetReactionDM.cpp + touch -r copasi/UI/CQEFMNetReactionDM.cpp copasi/UI/CQEFMNetReactionDM.cpp.new + mv copasi/UI/CQEFMNetReactionDM.cpp.new copasi/UI/CQEFMNetReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCreateModelVersionDialog.cpp.new copasi/UI/CCreateModelVersionDialog.cpp + touch -r copasi/UI/CCreateModelVersionDialog.cpp copasi/UI/CCreateModelVersionDialog.cpp.new + mv copasi/UI/CCreateModelVersionDialog.cpp.new copasi/UI/CCreateModelVersionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterGroupView.cpp.new copasi/UI/CQParameterGroupView.cpp + touch -r copasi/UI/CQParameterGroupView.cpp copasi/UI/CQParameterGroupView.cpp.new + mv copasi/UI/CQParameterGroupView.cpp.new copasi/UI/CQParameterGroupView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CProgressBar.cpp.new copasi/UI/CProgressBar.cpp + touch -r copasi/UI/CProgressBar.cpp copasi/UI/CProgressBar.cpp.new + mv copasi/UI/CProgressBar.cpp.new copasi/UI/CProgressBar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/StateSubwidget.cpp.new copasi/UI/StateSubwidget.cpp + touch -r copasi/UI/StateSubwidget.cpp copasi/UI/StateSubwidget.cpp.new + mv copasi/UI/StateSubwidget.cpp.new copasi/UI/StateSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTableView.cpp.new copasi/UI/CQTableView.cpp + touch -r copasi/UI/CQTableView.cpp copasi/UI/CQTableView.cpp.new + mv copasi/UI/CQTableView.cpp.new copasi/UI/CQTableView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSATimeScaleWidget.cpp.new copasi/UI/CQTSSATimeScaleWidget.cpp + touch -r copasi/UI/CQTSSATimeScaleWidget.cpp copasi/UI/CQTSSATimeScaleWidget.cpp.new + mv copasi/UI/CQTSSATimeScaleWidget.cpp.new copasi/UI/CQTSSATimeScaleWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventWidget1.cpp.new copasi/UI/CQEventWidget1.cpp + touch -r copasi/UI/CQEventWidget1.cpp copasi/UI/CQEventWidget1.cpp.new + mv copasi/UI/CQEventWidget1.cpp.new copasi/UI/CQEventWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterOverviewWidget.cpp.new copasi/UI/CQParameterOverviewWidget.cpp + touch -r copasi/UI/CQParameterOverviewWidget.cpp copasi/UI/CQParameterOverviewWidget.cpp.new + mv copasi/UI/CQParameterOverviewWidget.cpp.new copasi/UI/CQParameterOverviewWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMathMatrixWidget.cpp.new copasi/UI/CQMathMatrixWidget.cpp + touch -r copasi/UI/CQMathMatrixWidget.cpp copasi/UI/CQMathMatrixWidget.cpp.new + mv copasi/UI/CQMathMatrixWidget.cpp.new copasi/UI/CQMathMatrixWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBrowserPane.cpp.new copasi/UI/CQBrowserPane.cpp + touch -r copasi/UI/CQBrowserPane.cpp copasi/UI/CQBrowserPane.cpp.new + mv copasi/UI/CQBrowserPane.cpp.new copasi/UI/CQBrowserPane.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPlotDM.cpp.new copasi/UI/CQPlotDM.cpp + touch -r copasi/UI/CQPlotDM.cpp copasi/UI/CQPlotDM.cpp.new + mv copasi/UI/CQPlotDM.cpp.new copasi/UI/CQPlotDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPreferenceDialog.cpp.new copasi/UI/CQPreferenceDialog.cpp + touch -r copasi/UI/CQPreferenceDialog.cpp copasi/UI/CQPreferenceDialog.cpp.new + mv copasi/UI/CQPreferenceDialog.cpp.new copasi/UI/CQPreferenceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingResult.cpp.new copasi/UI/CQFittingResult.cpp + touch -r copasi/UI/CQFittingResult.cpp copasi/UI/CQFittingResult.cpp.new + mv copasi/UI/CQFittingResult.cpp.new copasi/UI/CQFittingResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMoietiesTaskResult.cpp.new copasi/UI/CQMoietiesTaskResult.cpp + touch -r copasi/UI/CQMoietiesTaskResult.cpp copasi/UI/CQMoietiesTaskResult.cpp.new + mv copasi/UI/CQMoietiesTaskResult.cpp.new copasi/UI/CQMoietiesTaskResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQNameSelectionDialog.cpp.new copasi/UI/CQNameSelectionDialog.cpp + touch -r copasi/UI/CQNameSelectionDialog.cpp copasi/UI/CQNameSelectionDialog.cpp.new + mv copasi/UI/CQNameSelectionDialog.cpp.new copasi/UI/CQNameSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBrowserPaneDM.cpp.new copasi/UI/CQBrowserPaneDM.cpp + touch -r copasi/UI/CQBrowserPaneDM.cpp copasi/UI/CQBrowserPaneDM.cpp.new + mv copasi/UI/CQBrowserPaneDM.cpp.new copasi/UI/CQBrowserPaneDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/AboutDialog.cpp.new copasi/UI/AboutDialog.cpp + touch -r copasi/UI/AboutDialog.cpp copasi/UI/AboutDialog.cpp.new + mv copasi/UI/AboutDialog.cpp.new copasi/UI/AboutDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentCopyOptions.cpp.new copasi/UI/CQCompartmentCopyOptions.cpp + touch -r copasi/UI/CQCompartmentCopyOptions.cpp copasi/UI/CQCompartmentCopyOptions.cpp.new + mv copasi/UI/CQCompartmentCopyOptions.cpp.new copasi/UI/CQCompartmentCopyOptions.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingItemWidget.cpp.new copasi/UI/CQFittingItemWidget.cpp + touch -r copasi/UI/CQFittingItemWidget.cpp copasi/UI/CQFittingItemWidget.cpp.new + mv copasi/UI/CQFittingItemWidget.cpp.new copasi/UI/CQFittingItemWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFunctionsWidget.cpp.new copasi/UI/CQFunctionsWidget.cpp + touch -r copasi/UI/CQFunctionsWidget.cpp copasi/UI/CQFunctionsWidget.cpp.new + mv copasi/UI/CQFunctionsWidget.cpp.new copasi/UI/CQFunctionsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQStartValueReset.cpp.new copasi/UI/CQStartValueReset.cpp + touch -r copasi/UI/CQStartValueReset.cpp copasi/UI/CQStartValueReset.cpp.new + mv copasi/UI/CQStartValueReset.cpp.new copasi/UI/CQStartValueReset.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQValidator.cpp.new copasi/UI/CQValidator.cpp + touch -r copasi/UI/CQValidator.cpp copasi/UI/CQValidator.cpp.new + mv copasi/UI/CQValidator.cpp.new copasi/UI/CQValidator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CopasiFileDialog.cpp.new copasi/UI/CopasiFileDialog.cpp + touch -r copasi/UI/CopasiFileDialog.cpp copasi/UI/CopasiFileDialog.cpp.new + mv copasi/UI/CopasiFileDialog.cpp.new copasi/UI/CopasiFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMmlScrollView.cpp.new copasi/UI/CQMmlScrollView.cpp + touch -r copasi/UI/CQMmlScrollView.cpp copasi/UI/CQMmlScrollView.cpp.new + mv copasi/UI/CQMmlScrollView.cpp.new copasi/UI/CQMmlScrollView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMListWidget.cpp.new copasi/UI/CQEFMListWidget.cpp + touch -r copasi/UI/CQEFMListWidget.cpp copasi/UI/CQEFMListWidget.cpp.new + mv copasi/UI/CQEFMListWidget.cpp.new copasi/UI/CQEFMListWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQComboDelegate.cpp.new copasi/UI/CQComboDelegate.cpp + touch -r copasi/UI/CQComboDelegate.cpp copasi/UI/CQComboDelegate.cpp.new + mv copasi/UI/CQComboDelegate.cpp.new copasi/UI/CQComboDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitDM.cpp.new copasi/UI/CQUnitDM.cpp + touch -r copasi/UI/CQUnitDM.cpp copasi/UI/CQUnitDM.cpp.new + mv copasi/UI/CQUnitDM.cpp.new copasi/UI/CQUnitDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserDialog.cpp.new copasi/UI/ObjectBrowserDialog.cpp + touch -r copasi/UI/ObjectBrowserDialog.cpp copasi/UI/ObjectBrowserDialog.cpp.new + mv copasi/UI/ObjectBrowserDialog.cpp.new copasi/UI/ObjectBrowserDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAResultWidget.cpp.new copasi/UI/CQTSSAResultWidget.cpp + touch -r copasi/UI/CQTSSAResultWidget.cpp copasi/UI/CQTSSAResultWidget.cpp.new + mv copasi/UI/CQTSSAResultWidget.cpp.new copasi/UI/CQTSSAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSortFilterProxyModel.cpp.new copasi/UI/CQSortFilterProxyModel.cpp + touch -r copasi/UI/CQSortFilterProxyModel.cpp copasi/UI/CQSortFilterProxyModel.cpp.new + mv copasi/UI/CQSortFilterProxyModel.cpp.new copasi/UI/CQSortFilterProxyModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserItem.cpp.new copasi/UI/ObjectBrowserItem.cpp + touch -r copasi/UI/ObjectBrowserItem.cpp copasi/UI/ObjectBrowserItem.cpp.new + mv copasi/UI/ObjectBrowserItem.cpp.new copasi/UI/ObjectBrowserItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDefinition.cpp.new copasi/UI/CQReportDefinition.cpp + touch -r copasi/UI/CQReportDefinition.cpp copasi/UI/CQReportDefinition.cpp.new + mv copasi/UI/CQReportDefinition.cpp.new copasi/UI/CQReportDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/MyLineEdit.cpp.new copasi/UI/MyLineEdit.cpp + touch -r copasi/UI/MyLineEdit.cpp copasi/UI/MyLineEdit.cpp.new + mv copasi/UI/MyLineEdit.cpp.new copasi/UI/MyLineEdit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSimpleSelectionTree.cpp.new copasi/UI/CQSimpleSelectionTree.cpp + touch -r copasi/UI/CQSimpleSelectionTree.cpp copasi/UI/CQSimpleSelectionTree.cpp.new + mv copasi/UI/CQSimpleSelectionTree.cpp.new copasi/UI/CQSimpleSelectionTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CopasiSlider.cpp.new copasi/UI/CopasiSlider.cpp + touch -r copasi/UI/CopasiSlider.cpp copasi/UI/CopasiSlider.cpp.new + mv copasi/UI/CopasiSlider.cpp.new copasi/UI/CopasiSlider.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterResultItemModel.cpp.new copasi/UI/CQParameterResultItemModel.cpp + touch -r copasi/UI/CQParameterResultItemModel.cpp copasi/UI/CQParameterResultItemModel.cpp.new + mv copasi/UI/CQParameterResultItemModel.cpp.new copasi/UI/CQParameterResultItemModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/DefaultplotDialog.cpp.new copasi/UI/DefaultplotDialog.cpp + touch -r copasi/UI/DefaultplotDialog.cpp copasi/UI/DefaultplotDialog.cpp.new + mv copasi/UI/DefaultplotDialog.cpp.new copasi/UI/DefaultplotDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAResultSubWidget.cpp.new copasi/UI/CQTSSAResultSubWidget.cpp + touch -r copasi/UI/CQTSSAResultSubWidget.cpp copasi/UI/CQTSSAResultSubWidget.cpp.new + mv copasi/UI/CQTSSAResultSubWidget.cpp.new copasi/UI/CQTSSAResultSubWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCopasiApplication.cpp.new copasi/UI/CQCopasiApplication.cpp + touch -r copasi/UI/CQCopasiApplication.cpp copasi/UI/CQCopasiApplication.cpp.new + mv copasi/UI/CQCopasiApplication.cpp.new copasi/UI/CQCopasiApplication.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMoietiesTaskWidget.cpp.new copasi/UI/CQMoietiesTaskWidget.cpp + touch -r copasi/UI/CQMoietiesTaskWidget.cpp copasi/UI/CQMoietiesTaskWidget.cpp.new + mv copasi/UI/CQMoietiesTaskWidget.cpp.new copasi/UI/CQMoietiesTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiSelectionDialog.cpp.new copasi/UI/CCopasiSelectionDialog.cpp + touch -r copasi/UI/CCopasiSelectionDialog.cpp copasi/UI/CCopasiSelectionDialog.cpp.new + mv copasi/UI/CCopasiSelectionDialog.cpp.new copasi/UI/CCopasiSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/parametertable.cpp.new copasi/UI/parametertable.cpp + touch -r copasi/UI/parametertable.cpp copasi/UI/parametertable.cpp.new + mv copasi/UI/parametertable.cpp.new copasi/UI/parametertable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ReactionsWidget1.cpp.new copasi/UI/ReactionsWidget1.cpp + touch -r copasi/UI/ReactionsWidget1.cpp copasi/UI/ReactionsWidget1.cpp.new + mv copasi/UI/ReactionsWidget1.cpp.new copasi/UI/ReactionsWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportsWidget.cpp.new copasi/UI/CQReportsWidget.cpp + touch -r copasi/UI/CQReportsWidget.cpp copasi/UI/CQReportsWidget.cpp.new + mv copasi/UI/CQReportsWidget.cpp.new copasi/UI/CQReportsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SensitivitiesWidget.cpp.new copasi/UI/SensitivitiesWidget.cpp + touch -r copasi/UI/SensitivitiesWidget.cpp copasi/UI/SensitivitiesWidget.cpp.new + mv copasi/UI/SensitivitiesWidget.cpp.new copasi/UI/SensitivitiesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQArrayAnnotationsWidget.cpp.new copasi/UI/CQArrayAnnotationsWidget.cpp + touch -r copasi/UI/CQArrayAnnotationsWidget.cpp copasi/UI/CQArrayAnnotationsWidget.cpp.new + mv copasi/UI/CQArrayAnnotationsWidget.cpp.new copasi/UI/CQArrayAnnotationsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependenciesWidget.cpp.new copasi/UI/CQDependenciesWidget.cpp + touch -r copasi/UI/CQDependenciesWidget.cpp copasi/UI/CQDependenciesWidget.cpp.new + mv copasi/UI/CQDependenciesWidget.cpp.new copasi/UI/CQDependenciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpressionWidget.cpp.new copasi/UI/CQExpressionWidget.cpp + touch -r copasi/UI/CQExpressionWidget.cpp copasi/UI/CQExpressionWidget.cpp.new + mv copasi/UI/CQExpressionWidget.cpp.new copasi/UI/CQExpressionWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventDM.cpp.new copasi/UI/CQEventDM.cpp + touch -r copasi/UI/CQEventDM.cpp copasi/UI/CQEventDM.cpp.new + mv copasi/UI/CQEventDM.cpp.new copasi/UI/CQEventDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskBtnWidget.cpp.new copasi/UI/CQTaskBtnWidget.cpp + touch -r copasi/UI/CQTaskBtnWidget.cpp copasi/UI/CQTaskBtnWidget.cpp.new + mv copasi/UI/CQTaskBtnWidget.cpp.new copasi/UI/CQTaskBtnWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMultipleSelectionDialog.cpp.new copasi/UI/CQMultipleSelectionDialog.cpp + touch -r copasi/UI/CQMultipleSelectionDialog.cpp copasi/UI/CQMultipleSelectionDialog.cpp.new + mv copasi/UI/CQMultipleSelectionDialog.cpp.new copasi/UI/CQMultipleSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptimizationWidget.cpp.new copasi/UI/CQOptimizationWidget.cpp + touch -r copasi/UI/CQOptimizationWidget.cpp copasi/UI/CQOptimizationWidget.cpp.new + mv copasi/UI/CQOptimizationWidget.cpp.new copasi/UI/CQOptimizationWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterEstimationResult.cpp.new copasi/UI/CQParameterEstimationResult.cpp + touch -r copasi/UI/CQParameterEstimationResult.cpp copasi/UI/CQParameterEstimationResult.cpp.new + mv copasi/UI/CQParameterEstimationResult.cpp.new copasi/UI/CQParameterEstimationResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpecieDM.cpp.new copasi/UI/CQSpecieDM.cpp + touch -r copasi/UI/CQSpecieDM.cpp copasi/UI/CQSpecieDM.cpp.new + mv copasi/UI/CQSpecieDM.cpp.new copasi/UI/CQSpecieDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReactionsWidget.cpp.new copasi/UI/CQReactionsWidget.cpp + touch -r copasi/UI/CQReactionsWidget.cpp copasi/UI/CQReactionsWidget.cpp.new + mv copasi/UI/CQReactionsWidget.cpp.new copasi/UI/CQReactionsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CColorScale.cpp.new copasi/UI/CColorScale.cpp + touch -r copasi/UI/CColorScale.cpp copasi/UI/CColorScale.cpp.new + mv copasi/UI/CColorScale.cpp.new copasi/UI/CColorScale.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetTask.cpp.new copasi/UI/CScanWidgetTask.cpp + touch -r copasi/UI/CScanWidgetTask.cpp copasi/UI/CScanWidgetTask.cpp.new + mv copasi/UI/CScanWidgetTask.cpp.new copasi/UI/CScanWidgetTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CWindowInterface.cpp.new copasi/UI/CWindowInterface.cpp + touch -r copasi/UI/CWindowInterface.cpp copasi/UI/CWindowInterface.cpp.new + mv copasi/UI/CWindowInterface.cpp.new copasi/UI/CWindowInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBaseDataModel.cpp.new copasi/UI/CQBaseDataModel.cpp + touch -r copasi/UI/CQBaseDataModel.cpp copasi/UI/CQBaseDataModel.cpp.new + mv copasi/UI/CQBaseDataModel.cpp.new copasi/UI/CQBaseDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingResultTab1.cpp.new copasi/UI/CQFittingResultTab1.cpp + touch -r copasi/UI/CQFittingResultTab1.cpp copasi/UI/CQFittingResultTab1.cpp.new + mv copasi/UI/CQFittingResultTab1.cpp.new copasi/UI/CQFittingResultTab1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCrossSectionTaskWidget.cpp.new copasi/UI/CQCrossSectionTaskWidget.cpp + touch -r copasi/UI/CQCrossSectionTaskWidget.cpp copasi/UI/CQCrossSectionTaskWidget.cpp.new + mv copasi/UI/CQCrossSectionTaskWidget.cpp.new copasi/UI/CQCrossSectionTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetRepeat.cpp.new copasi/UI/CScanWidgetRepeat.cpp + touch -r copasi/UI/CScanWidgetRepeat.cpp copasi/UI/CScanWidgetRepeat.cpp.new + mv copasi/UI/CScanWidgetRepeat.cpp.new copasi/UI/CScanWidgetRepeat.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressDialog.cpp.new copasi/UI/CQProgressDialog.cpp + touch -r copasi/UI/CQProgressDialog.cpp copasi/UI/CQProgressDialog.cpp.new + mv copasi/UI/CQProgressDialog.cpp.new copasi/UI/CQProgressDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CBrowseModelVersionDialog.cpp.new copasi/UI/CBrowseModelVersionDialog.cpp + touch -r copasi/UI/CBrowseModelVersionDialog.cpp copasi/UI/CBrowseModelVersionDialog.cpp.new + mv copasi/UI/CBrowseModelVersionDialog.cpp.new copasi/UI/CBrowseModelVersionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CLNAResultSubwidget.cpp.new copasi/UI/CLNAResultSubwidget.cpp + touch -r copasi/UI/CLNAResultSubwidget.cpp copasi/UI/CLNAResultSubwidget.cpp.new + mv copasi/UI/CLNAResultSubwidget.cpp.new copasi/UI/CLNAResultSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterSetsDM.cpp.new copasi/UI/CQParameterSetsDM.cpp + touch -r copasi/UI/CQParameterSetsDM.cpp copasi/UI/CQParameterSetsDM.cpp.new + mv copasi/UI/CQParameterSetsDM.cpp.new copasi/UI/CQParameterSetsDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQModelWidget.cpp.new copasi/UI/CQModelWidget.cpp + touch -r copasi/UI/CQModelWidget.cpp copasi/UI/CQModelWidget.cpp.new + mv copasi/UI/CQModelWidget.cpp.new copasi/UI/CQModelWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitDetail.cpp.new copasi/UI/CQUnitDetail.cpp + touch -r copasi/UI/CQUnitDetail.cpp copasi/UI/CQUnitDetail.cpp.new + mv copasi/UI/CQUnitDetail.cpp.new copasi/UI/CQUnitDetail.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportListItem.cpp.new copasi/UI/CQReportListItem.cpp + touch -r copasi/UI/CQReportListItem.cpp copasi/UI/CQReportListItem.cpp.new + mv copasi/UI/CQReportListItem.cpp.new copasi/UI/CQReportListItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPushButtonDelegate.cpp.new copasi/UI/CQPushButtonDelegate.cpp + touch -r copasi/UI/CQPushButtonDelegate.cpp copasi/UI/CQPushButtonDelegate.cpp.new + mv copasi/UI/CQPushButtonDelegate.cpp.new copasi/UI/CQPushButtonDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSensResultWidget.cpp.new copasi/UI/CQSensResultWidget.cpp + touch -r copasi/UI/CQSensResultWidget.cpp copasi/UI/CQSensResultWidget.cpp.new + mv copasi/UI/CQSensResultWidget.cpp.new copasi/UI/CQSensResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUndoHistoryDialog.cpp.new copasi/UI/CQUndoHistoryDialog.cpp + touch -r copasi/UI/CQUndoHistoryDialog.cpp copasi/UI/CQUndoHistoryDialog.cpp.new + mv copasi/UI/CQUndoHistoryDialog.cpp.new copasi/UI/CQUndoHistoryDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFunctionDM.cpp.new copasi/UI/CQFunctionDM.cpp + touch -r copasi/UI/CQFunctionDM.cpp copasi/UI/CQFunctionDM.cpp.new + mv copasi/UI/CQFunctionDM.cpp.new copasi/UI/CQFunctionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSBMLFileDialog.cpp.new copasi/UI/CQSBMLFileDialog.cpp + touch -r copasi/UI/CQSBMLFileDialog.cpp copasi/UI/CQSBMLFileDialog.cpp.new + mv copasi/UI/CQSBMLFileDialog.cpp.new copasi/UI/CQSBMLFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependencyWidget.cpp.new copasi/UI/CQDependencyWidget.cpp + touch -r copasi/UI/CQDependencyWidget.cpp copasi/UI/CQDependencyWidget.cpp.new + mv copasi/UI/CQDependencyWidget.cpp.new copasi/UI/CQDependencyWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMWidget.cpp.new copasi/UI/CQEFMWidget.cpp + touch -r copasi/UI/CQEFMWidget.cpp copasi/UI/CQEFMWidget.cpp.new + mv copasi/UI/CQEFMWidget.cpp.new copasi/UI/CQEFMWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQNotes.cpp.new copasi/UI/CQNotes.cpp + touch -r copasi/UI/CQNotes.cpp copasi/UI/CQNotes.cpp.new + mv copasi/UI/CQNotes.cpp.new copasi/UI/CQNotes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExperimentData.cpp.new copasi/UI/CQExperimentData.cpp + touch -r copasi/UI/CQExperimentData.cpp copasi/UI/CQExperimentData.cpp.new + mv copasi/UI/CQExperimentData.cpp.new copasi/UI/CQExperimentData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSeriesWidget.cpp.new copasi/UI/CQTimeSeriesWidget.cpp + touch -r copasi/UI/CQTimeSeriesWidget.cpp copasi/UI/CQTimeSeriesWidget.cpp.new + mv copasi/UI/CQTimeSeriesWidget.cpp.new copasi/UI/CQTimeSeriesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItemText.cpp.new copasi/UI/CQProgressItemText.cpp + touch -r copasi/UI/CQProgressItemText.cpp copasi/UI/CQProgressItemText.cpp.new + mv copasi/UI/CQProgressItemText.cpp.new copasi/UI/CQProgressItemText.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskMethodWidget.cpp.new copasi/UI/CQTaskMethodWidget.cpp + touch -r copasi/UI/CQTaskMethodWidget.cpp copasi/UI/CQTaskMethodWidget.cpp.new + mv copasi/UI/CQTaskMethodWidget.cpp.new copasi/UI/CQTaskMethodWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSplashWidget.cpp.new copasi/UI/CQSplashWidget.cpp + touch -r copasi/UI/CQSplashWidget.cpp copasi/UI/CQSplashWidget.cpp.new + mv copasi/UI/CQSplashWidget.cpp.new copasi/UI/CQSplashWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependencyDialog.cpp.new copasi/UI/CQDependencyDialog.cpp + touch -r copasi/UI/CQDependencyDialog.cpp copasi/UI/CQDependencyDialog.cpp.new + mv copasi/UI/CQDependencyDialog.cpp.new copasi/UI/CQDependencyDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpressionMmlStackedWidget.cpp.new copasi/UI/CQExpressionMmlStackedWidget.cpp + touch -r copasi/UI/CQExpressionMmlStackedWidget.cpp copasi/UI/CQExpressionMmlStackedWidget.cpp.new + mv copasi/UI/CQExpressionMmlStackedWidget.cpp.new copasi/UI/CQExpressionMmlStackedWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SteadyStateWidget.cpp.new copasi/UI/SteadyStateWidget.cpp + touch -r copasi/UI/SteadyStateWidget.cpp copasi/UI/SteadyStateWidget.cpp.new + mv copasi/UI/SteadyStateWidget.cpp.new copasi/UI/SteadyStateWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLyapResultWidget.cpp.new copasi/UI/CQLyapResultWidget.cpp + touch -r copasi/UI/CQLyapResultWidget.cpp copasi/UI/CQLyapResultWidget.cpp.new + mv copasi/UI/CQLyapResultWidget.cpp.new copasi/UI/CQLyapResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQScrolledDependenciesWidget.cpp.new copasi/UI/CQScrolledDependenciesWidget.cpp + touch -r copasi/UI/CQScrolledDependenciesWidget.cpp copasi/UI/CQScrolledDependenciesWidget.cpp.new + mv copasi/UI/CQScrolledDependenciesWidget.cpp.new copasi/UI/CQScrolledDependenciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSteadyStateResult.cpp.new copasi/UI/CQSteadyStateResult.cpp + touch -r copasi/UI/CQSteadyStateResult.cpp copasi/UI/CQSteadyStateResult.cpp.new + mv copasi/UI/CQSteadyStateResult.cpp.new copasi/UI/CQSteadyStateResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpandModelData.cpp.new copasi/UI/CQExpandModelData.cpp + touch -r copasi/UI/CQExpandModelData.cpp copasi/UI/CQExpandModelData.cpp.new + mv copasi/UI/CQExpandModelData.cpp.new copasi/UI/CQExpandModelData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMResultWidget.cpp.new copasi/UI/CQEFMResultWidget.cpp + touch -r copasi/UI/CQEFMResultWidget.cpp copasi/UI/CQEFMResultWidget.cpp.new + mv copasi/UI/CQEFMResultWidget.cpp.new copasi/UI/CQEFMResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOscillationTaskWidget.cpp.new copasi/UI/CQOscillationTaskWidget.cpp + touch -r copasi/UI/CQOscillationTaskWidget.cpp copasi/UI/CQOscillationTaskWidget.cpp.new + mv copasi/UI/CQOscillationTaskWidget.cpp.new copasi/UI/CQOscillationTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQAnalyticsWidget.cpp.new copasi/UI/CQAnalyticsWidget.cpp + touch -r copasi/UI/CQAnalyticsWidget.cpp copasi/UI/CQAnalyticsWidget.cpp.new + mv copasi/UI/CQAnalyticsWidget.cpp.new copasi/UI/CQAnalyticsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CLNAResultWidget.cpp.new copasi/UI/CLNAResultWidget.cpp + touch -r copasi/UI/CLNAResultWidget.cpp copasi/UI/CLNAResultWidget.cpp.new + mv copasi/UI/CLNAResultWidget.cpp.new copasi/UI/CLNAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanContainerWidget.cpp.new copasi/UI/CScanContainerWidget.cpp + touch -r copasi/UI/CScanContainerWidget.cpp copasi/UI/CScanContainerWidget.cpp.new + mv copasi/UI/CScanContainerWidget.cpp.new copasi/UI/CScanContainerWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLayoutsWidget.cpp.new copasi/UI/CQLayoutsWidget.cpp + touch -r copasi/UI/CQLayoutsWidget.cpp copasi/UI/CQLayoutsWidget.cpp.new + mv copasi/UI/CQLayoutsWidget.cpp.new copasi/UI/CQLayoutsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUpdateAvogadro.cpp.new copasi/UI/CQUpdateAvogadro.cpp + touch -r copasi/UI/CQUpdateAvogadro.cpp copasi/UI/CQUpdateAvogadro.cpp.new + mv copasi/UI/CQUpdateAvogadro.cpp.new copasi/UI/CQUpdateAvogadro.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentsWidget.cpp.new copasi/UI/CQCompartmentsWidget.cpp + touch -r copasi/UI/CQCompartmentsWidget.cpp copasi/UI/CQCompartmentsWidget.cpp.new + mv copasi/UI/CQCompartmentsWidget.cpp.new copasi/UI/CQCompartmentsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterOverviewDM.cpp.new copasi/UI/CQParameterOverviewDM.cpp + touch -r copasi/UI/CQParameterOverviewDM.cpp copasi/UI/CQParameterOverviewDM.cpp.new + mv copasi/UI/CQParameterOverviewDM.cpp.new copasi/UI/CQParameterOverviewDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CEntityProvenanceDialog.cpp.new copasi/UI/CEntityProvenanceDialog.cpp + touch -r copasi/UI/CEntityProvenanceDialog.cpp copasi/UI/CEntityProvenanceDialog.cpp.new + mv copasi/UI/CEntityProvenanceDialog.cpp.new copasi/UI/CEntityProvenanceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDefinitionSelect.cpp.new copasi/UI/CQReportDefinitionSelect.cpp + touch -r copasi/UI/CQReportDefinitionSelect.cpp copasi/UI/CQReportDefinitionSelect.cpp.new + mv copasi/UI/CQReportDefinitionSelect.cpp.new copasi/UI/CQReportDefinitionSelect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPlotsWidget.cpp.new copasi/UI/CQPlotsWidget.cpp + touch -r copasi/UI/CQPlotsWidget.cpp copasi/UI/CQPlotsWidget.cpp.new + mv copasi/UI/CQPlotsWidget.cpp.new copasi/UI/CQPlotsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ScanWidget.cpp.new copasi/UI/ScanWidget.cpp + touch -r copasi/UI/ScanWidget.cpp copasi/UI/ScanWidget.cpp.new + mv copasi/UI/ScanWidget.cpp.new copasi/UI/ScanWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/listviews.cpp.new copasi/UI/listviews.cpp + touch -r copasi/UI/listviews.cpp copasi/UI/listviews.cpp.new + mv copasi/UI/listviews.cpp.new copasi/UI/listviews.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQModelValue.cpp.new copasi/UI/CQModelValue.cpp + touch -r copasi/UI/CQModelValue.cpp copasi/UI/CQModelValue.cpp.new + mv copasi/UI/CQModelValue.cpp.new copasi/UI/CQModelValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SliderDialog.cpp.new copasi/UI/SliderDialog.cpp + touch -r copasi/UI/SliderDialog.cpp copasi/UI/SliderDialog.cpp.new + mv copasi/UI/SliderDialog.cpp.new copasi/UI/SliderDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new copasi/UI/CQArrayAnnotationsWidgetDM.cpp + touch -r copasi/UI/CQArrayAnnotationsWidgetDM.cpp copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new + mv copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new copasi/UI/CQArrayAnnotationsWidgetDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingWidget.cpp.new copasi/UI/CQFittingWidget.cpp + touch -r copasi/UI/CQFittingWidget.cpp copasi/UI/CQFittingWidget.cpp.new + mv copasi/UI/CQFittingWidget.cpp.new copasi/UI/CQFittingWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterSetsWidget.cpp.new copasi/UI/CQParameterSetsWidget.cpp + touch -r copasi/UI/CQParameterSetsWidget.cpp copasi/UI/CQParameterSetsWidget.cpp.new + mv copasi/UI/CQParameterSetsWidget.cpp.new copasi/UI/CQParameterSetsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SliderSettingsDialog.cpp.new copasi/UI/SliderSettingsDialog.cpp + touch -r copasi/UI/SliderSettingsDialog.cpp copasi/UI/SliderSettingsDialog.cpp.new + mv copasi/UI/SliderSettingsDialog.cpp.new copasi/UI/SliderSettingsDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/FunctionWidget1.cpp.new copasi/UI/FunctionWidget1.cpp + touch -r copasi/UI/FunctionWidget1.cpp copasi/UI/FunctionWidget1.cpp.new + mv copasi/UI/FunctionWidget1.cpp.new copasi/UI/FunctionWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQGlobalQuantityDM.cpp.new copasi/UI/CQGlobalQuantityDM.cpp + touch -r copasi/UI/CQGlobalQuantityDM.cpp copasi/UI/CQGlobalQuantityDM.cpp.new + mv copasi/UI/CQGlobalQuantityDM.cpp.new copasi/UI/CQGlobalQuantityDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItemBar.cpp.new copasi/UI/CQProgressItemBar.cpp + touch -r copasi/UI/CQProgressItemBar.cpp copasi/UI/CQProgressItemBar.cpp.new + mv copasi/UI/CQProgressItemBar.cpp.new copasi/UI/CQProgressItemBar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitsWidget.cpp.new copasi/UI/CQUnitsWidget.cpp + touch -r copasi/UI/CQUnitsWidget.cpp copasi/UI/CQUnitsWidget.cpp.new + mv copasi/UI/CQUnitsWidget.cpp.new copasi/UI/CQUnitsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetScan.cpp.new copasi/UI/CScanWidgetScan.cpp + touch -r copasi/UI/CScanWidgetScan.cpp copasi/UI/CScanWidgetScan.cpp.new + mv copasi/UI/CScanWidgetScan.cpp.new copasi/UI/CScanWidgetScan.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLyapWidget.cpp.new copasi/UI/CQLyapWidget.cpp + touch -r copasi/UI/CQLyapWidget.cpp copasi/UI/CQLyapWidget.cpp.new + mv copasi/UI/CQLyapWidget.cpp.new copasi/UI/CQLyapWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SensWidgetComboBox.cpp.new copasi/UI/SensWidgetComboBox.cpp + touch -r copasi/UI/SensWidgetComboBox.cpp copasi/UI/SensWidgetComboBox.cpp.new + mv copasi/UI/SensWidgetComboBox.cpp.new copasi/UI/SensWidgetComboBox.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpinBoxDelegate.cpp.new copasi/UI/CQSpinBoxDelegate.cpp + touch -r copasi/UI/CQSpinBoxDelegate.cpp copasi/UI/CQSpinBoxDelegate.cpp.new + mv copasi/UI/CQSpinBoxDelegate.cpp.new copasi/UI/CQSpinBoxDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItem.cpp.new copasi/UI/CQProgressItem.cpp + touch -r copasi/UI/CQProgressItem.cpp copasi/UI/CQProgressItem.cpp.new + mv copasi/UI/CQProgressItem.cpp.new copasi/UI/CQProgressItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/objectdebug.cpp.new copasi/UI/objectdebug.cpp + touch -r copasi/UI/objectdebug.cpp copasi/UI/objectdebug.cpp.new + mv copasi/UI/objectdebug.cpp.new copasi/UI/objectdebug.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMReactionDM.cpp.new copasi/UI/CQEFMReactionDM.cpp + touch -r copasi/UI/CQEFMReactionDM.cpp copasi/UI/CQEFMReactionDM.cpp.new + mv copasi/UI/CQEFMReactionDM.cpp.new copasi/UI/CQEFMReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMergingData.cpp.new copasi/UI/CQMergingData.cpp + touch -r copasi/UI/CQMergingData.cpp copasi/UI/CQMergingData.cpp.new + mv copasi/UI/CQMergingData.cpp.new copasi/UI/CQMergingData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/DataModelGUI.cpp.new copasi/UI/DataModelGUI.cpp + touch -r copasi/UI/DataModelGUI.cpp copasi/UI/DataModelGUI.cpp.new + mv copasi/UI/DataModelGUI.cpp.new copasi/UI/DataModelGUI.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CProvenanceDialog.cpp.new copasi/UI/CProvenanceDialog.cpp + touch -r copasi/UI/CProvenanceDialog.cpp copasi/UI/CProvenanceDialog.cpp.new + mv copasi/UI/CProvenanceDialog.cpp.new copasi/UI/CProvenanceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CMCAResultWidget.cpp.new copasi/UI/CMCAResultWidget.cpp + touch -r copasi/UI/CMCAResultWidget.cpp copasi/UI/CMCAResultWidget.cpp.new + mv copasi/UI/CMCAResultWidget.cpp.new copasi/UI/CMCAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptPopulation.cpp.new copasi/UI/CQOptPopulation.cpp + touch -r copasi/UI/CQOptPopulation.cpp copasi/UI/CQOptPopulation.cpp.new + mv copasi/UI/CQOptPopulation.cpp.new copasi/UI/CQOptPopulation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQValidatorUnit.cpp.new copasi/UI/CQValidatorUnit.cpp + touch -r copasi/UI/CQValidatorUnit.cpp copasi/UI/CQValidatorUnit.cpp.new + mv copasi/UI/CQValidatorUnit.cpp.new copasi/UI/CQValidatorUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMessageBox.cpp.new copasi/UI/CQMessageBox.cpp + touch -r copasi/UI/CQMessageBox.cpp copasi/UI/CQMessageBox.cpp.new + mv copasi/UI/CQMessageBox.cpp.new copasi/UI/CQMessageBox.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CUpDownSubwidget.cpp.new copasi/UI/CUpDownSubwidget.cpp + touch -r copasi/UI/CUpDownSubwidget.cpp copasi/UI/CUpDownSubwidget.cpp.new + mv copasi/UI/CUpDownSubwidget.cpp.new copasi/UI/CUpDownSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTabWidget.cpp.new copasi/UI/CQTabWidget.cpp + touch -r copasi/UI/CQTabWidget.cpp copasi/UI/CQTabWidget.cpp.new + mv copasi/UI/CQTabWidget.cpp.new copasi/UI/CQTabWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSeriesDM.cpp.new copasi/UI/CQTimeSeriesDM.cpp + touch -r copasi/UI/CQTimeSeriesDM.cpp copasi/UI/CQTimeSeriesDM.cpp.new + mv copasi/UI/CQTimeSeriesDM.cpp.new copasi/UI/CQTimeSeriesDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpeciesDetail.cpp.new copasi/UI/CQSpeciesDetail.cpp + touch -r copasi/UI/CQSpeciesDetail.cpp copasi/UI/CQSpeciesDetail.cpp.new + mv copasi/UI/CQSpeciesDetail.cpp.new copasi/UI/CQSpeciesDetail.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventsWidget.cpp.new copasi/UI/CQEventsWidget.cpp + touch -r copasi/UI/CQEventsWidget.cpp copasi/UI/CQEventsWidget.cpp.new + mv copasi/UI/CQEventsWidget.cpp.new copasi/UI/CQEventsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDateTimeEditDelegate.cpp.new copasi/UI/CQDateTimeEditDelegate.cpp + touch -r copasi/UI/CQDateTimeEditDelegate.cpp copasi/UI/CQDateTimeEditDelegate.cpp.new + mv copasi/UI/CQDateTimeEditDelegate.cpp.new copasi/UI/CQDateTimeEditDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterGroupDM.cpp.new copasi/UI/CQParameterGroupDM.cpp + touch -r copasi/UI/CQParameterGroupDM.cpp copasi/UI/CQParameterGroupDM.cpp.new + mv copasi/UI/CQParameterGroupDM.cpp.new copasi/UI/CQParameterGroupDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/Provenance/CProvenanceXMLWriter.cpp.new copasi/Provenance/CProvenanceXMLWriter.cpp + touch -r copasi/Provenance/CProvenanceXMLWriter.cpp copasi/Provenance/CProvenanceXMLWriter.cpp.new + mv copasi/Provenance/CProvenanceXMLWriter.cpp.new copasi/Provenance/CProvenanceXMLWriter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CBiologicalDescription.cpp.new copasi/MIRIAM/CBiologicalDescription.cpp + touch -r copasi/MIRIAM/CBiologicalDescription.cpp copasi/MIRIAM/CBiologicalDescription.cpp.new + mv copasi/MIRIAM/CBiologicalDescription.cpp.new copasi/MIRIAM/CBiologicalDescription.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRaptorInit.cpp.new copasi/MIRIAM/CRaptorInit.cpp + touch -r copasi/MIRIAM/CRaptorInit.cpp copasi/MIRIAM/CRaptorInit.cpp.new + mv copasi/MIRIAM/CRaptorInit.cpp.new copasi/MIRIAM/CRaptorInit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFTriplet.cpp.new copasi/MIRIAM/CRDFTriplet.cpp + touch -r copasi/MIRIAM/CRDFTriplet.cpp copasi/MIRIAM/CRDFTriplet.cpp.new + mv copasi/MIRIAM/CRDFTriplet.cpp.new copasi/MIRIAM/CRDFTriplet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFLiteral.cpp.new copasi/MIRIAM/CRDFLiteral.cpp + touch -r copasi/MIRIAM/CRDFLiteral.cpp copasi/MIRIAM/CRDFLiteral.cpp.new + mv copasi/MIRIAM/CRDFLiteral.cpp.new copasi/MIRIAM/CRDFLiteral.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFUtilities.cpp.new copasi/MIRIAM/CRDFUtilities.cpp + touch -r copasi/MIRIAM/CRDFUtilities.cpp copasi/MIRIAM/CRDFUtilities.cpp.new + mv copasi/MIRIAM/CRDFUtilities.cpp.new copasi/MIRIAM/CRDFUtilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFNode.cpp.new copasi/MIRIAM/CRDFNode.cpp + touch -r copasi/MIRIAM/CRDFNode.cpp copasi/MIRIAM/CRDFNode.cpp.new + mv copasi/MIRIAM/CRDFNode.cpp.new copasi/MIRIAM/CRDFNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CReference.cpp.new copasi/MIRIAM/CReference.cpp + touch -r copasi/MIRIAM/CReference.cpp copasi/MIRIAM/CReference.cpp.new + mv copasi/MIRIAM/CReference.cpp.new copasi/MIRIAM/CReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CCreator.cpp.new copasi/MIRIAM/CCreator.cpp + touch -r copasi/MIRIAM/CCreator.cpp copasi/MIRIAM/CCreator.cpp.new + mv copasi/MIRIAM/CCreator.cpp.new copasi/MIRIAM/CCreator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CMIRIAMResource.cpp.new copasi/MIRIAM/CMIRIAMResource.cpp + touch -r copasi/MIRIAM/CMIRIAMResource.cpp copasi/MIRIAM/CMIRIAMResource.cpp.new + mv copasi/MIRIAM/CMIRIAMResource.cpp.new copasi/MIRIAM/CMIRIAMResource.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFPredicate.cpp.new copasi/MIRIAM/CRDFPredicate.cpp + touch -r copasi/MIRIAM/CRDFPredicate.cpp copasi/MIRIAM/CRDFPredicate.cpp.new + mv copasi/MIRIAM/CRDFPredicate.cpp.new copasi/MIRIAM/CRDFPredicate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp.new copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp + touch -r copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp.new + mv copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp.new copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/WebServicesIssues/soapC.cpp.new copasi/MIRIAM/WebServicesIssues/soapC.cpp + touch -r copasi/MIRIAM/WebServicesIssues/soapC.cpp copasi/MIRIAM/WebServicesIssues/soapC.cpp.new + mv copasi/MIRIAM/WebServicesIssues/soapC.cpp.new copasi/MIRIAM/WebServicesIssues/soapC.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp.new copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp + touch -r copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp.new + mv copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp.new copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CModelMIRIAMInfo.cpp.new copasi/MIRIAM/CModelMIRIAMInfo.cpp + touch -r copasi/MIRIAM/CModelMIRIAMInfo.cpp copasi/MIRIAM/CModelMIRIAMInfo.cpp.new + mv copasi/MIRIAM/CModelMIRIAMInfo.cpp.new copasi/MIRIAM/CModelMIRIAMInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFGraph.cpp.new copasi/MIRIAM/CRDFGraph.cpp + touch -r copasi/MIRIAM/CRDFGraph.cpp copasi/MIRIAM/CRDFGraph.cpp.new + mv copasi/MIRIAM/CRDFGraph.cpp.new copasi/MIRIAM/CRDFGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFParser.cpp.new copasi/MIRIAM/CRDFParser.cpp + touch -r copasi/MIRIAM/CRDFParser.cpp copasi/MIRIAM/CRDFParser.cpp.new + mv copasi/MIRIAM/CRDFParser.cpp.new copasi/MIRIAM/CRDFParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFWriter.cpp.new copasi/MIRIAM/CRDFWriter.cpp + touch -r copasi/MIRIAM/CRDFWriter.cpp copasi/MIRIAM/CRDFWriter.cpp.new + mv copasi/MIRIAM/CRDFWriter.cpp.new copasi/MIRIAM/CRDFWriter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CModified.cpp.new copasi/MIRIAM/CModified.cpp + touch -r copasi/MIRIAM/CModified.cpp copasi/MIRIAM/CModified.cpp.new + mv copasi/MIRIAM/CModified.cpp.new copasi/MIRIAM/CModified.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFGraphConverter.cpp.new copasi/MIRIAM/CRDFGraphConverter.cpp + touch -r copasi/MIRIAM/CRDFGraphConverter.cpp copasi/MIRIAM/CRDFGraphConverter.cpp.new + mv copasi/MIRIAM/CRDFGraphConverter.cpp.new copasi/MIRIAM/CRDFGraphConverter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFObject.cpp.new copasi/MIRIAM/CRDFObject.cpp + touch -r copasi/MIRIAM/CRDFObject.cpp copasi/MIRIAM/CRDFObject.cpp.new + mv copasi/MIRIAM/CRDFObject.cpp.new copasi/MIRIAM/CRDFObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CConstants.cpp.new copasi/MIRIAM/CConstants.cpp + touch -r copasi/MIRIAM/CConstants.cpp copasi/MIRIAM/CConstants.cpp.new + mv copasi/MIRIAM/CConstants.cpp.new copasi/MIRIAM/CConstants.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFSubject.cpp.new copasi/MIRIAM/CRDFSubject.cpp + touch -r copasi/MIRIAM/CRDFSubject.cpp copasi/MIRIAM/CRDFSubject.cpp.new + mv copasi/MIRIAM/CRDFSubject.cpp.new copasi/MIRIAM/CRDFSubject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test/test.cpp.new copasi/test/test.cpp + touch -r copasi/test/test.cpp copasi/test/test.cpp.new + mv copasi/test/test.cpp.new copasi/test/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CStatistics.cpp.new copasi/analytics/CStatistics.cpp + touch -r copasi/analytics/CStatistics.cpp copasi/analytics/CStatistics.cpp.new + mv copasi/analytics/CStatistics.cpp.new copasi/analytics/CStatistics.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsMethod.cpp.new copasi/analytics/CAnalyticsMethod.cpp + touch -r copasi/analytics/CAnalyticsMethod.cpp copasi/analytics/CAnalyticsMethod.cpp.new + mv copasi/analytics/CAnalyticsMethod.cpp.new copasi/analytics/CAnalyticsMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsTask.cpp.new copasi/analytics/CAnalyticsTask.cpp + touch -r copasi/analytics/CAnalyticsTask.cpp copasi/analytics/CAnalyticsTask.cpp.new + mv copasi/analytics/CAnalyticsTask.cpp.new copasi/analytics/CAnalyticsTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsProblem.cpp.new copasi/analytics/CAnalyticsProblem.cpp + touch -r copasi/analytics/CAnalyticsProblem.cpp copasi/analytics/CAnalyticsProblem.cpp.new + mv copasi/analytics/CAnalyticsProblem.cpp.new copasi/analytics/CAnalyticsProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitTask.cpp.new copasi/parameterFitting/CFitTask.cpp + touch -r copasi/parameterFitting/CFitTask.cpp copasi/parameterFitting/CFitTask.cpp.new + mv copasi/parameterFitting/CFitTask.cpp.new copasi/parameterFitting/CFitTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentSet.cpp.new copasi/parameterFitting/CExperimentSet.cpp + touch -r copasi/parameterFitting/CExperimentSet.cpp copasi/parameterFitting/CExperimentSet.cpp.new + mv copasi/parameterFitting/CExperimentSet.cpp.new copasi/parameterFitting/CExperimentSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitProblem.cpp.new copasi/parameterFitting/CFitProblem.cpp + touch -r copasi/parameterFitting/CFitProblem.cpp copasi/parameterFitting/CFitProblem.cpp.new + mv copasi/parameterFitting/CFitProblem.cpp.new copasi/parameterFitting/CFitProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentObjectMap.cpp.new copasi/parameterFitting/CExperimentObjectMap.cpp + touch -r copasi/parameterFitting/CExperimentObjectMap.cpp copasi/parameterFitting/CExperimentObjectMap.cpp.new + mv copasi/parameterFitting/CExperimentObjectMap.cpp.new copasi/parameterFitting/CExperimentObjectMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperiment.cpp.new copasi/parameterFitting/CExperiment.cpp + touch -r copasi/parameterFitting/CExperiment.cpp copasi/parameterFitting/CExperiment.cpp.new + mv copasi/parameterFitting/CExperiment.cpp.new copasi/parameterFitting/CExperiment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitItem.cpp.new copasi/parameterFitting/CFitItem.cpp + touch -r copasi/parameterFitting/CFitItem.cpp copasi/parameterFitting/CFitItem.cpp.new + mv copasi/parameterFitting/CFitItem.cpp.new copasi/parameterFitting/CFitItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentFileInfo.cpp.new copasi/parameterFitting/CExperimentFileInfo.cpp + touch -r copasi/parameterFitting/CExperimentFileInfo.cpp copasi/parameterFitting/CExperimentFileInfo.cpp.new + mv copasi/parameterFitting/CExperimentFileInfo.cpp.new copasi/parameterFitting/CExperimentFileInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSAProblem.cpp.new copasi/tssanalysis/CTSSAProblem.cpp + touch -r copasi/tssanalysis/CTSSAProblem.cpp copasi/tssanalysis/CTSSAProblem.cpp.new + mv copasi/tssanalysis/CTSSAProblem.cpp.new copasi/tssanalysis/CTSSAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSAMethod.cpp.new copasi/tssanalysis/CTSSAMethod.cpp + touch -r copasi/tssanalysis/CTSSAMethod.cpp copasi/tssanalysis/CTSSAMethod.cpp.new + mv copasi/tssanalysis/CTSSAMethod.cpp.new copasi/tssanalysis/CTSSAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CILDMModifiedMethod.cpp.new copasi/tssanalysis/CILDMModifiedMethod.cpp + touch -r copasi/tssanalysis/CILDMModifiedMethod.cpp copasi/tssanalysis/CILDMModifiedMethod.cpp.new + mv copasi/tssanalysis/CILDMModifiedMethod.cpp.new copasi/tssanalysis/CILDMModifiedMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CILDMMethod.cpp.new copasi/tssanalysis/CILDMMethod.cpp + touch -r copasi/tssanalysis/CILDMMethod.cpp copasi/tssanalysis/CILDMMethod.cpp.new + mv copasi/tssanalysis/CILDMMethod.cpp.new copasi/tssanalysis/CILDMMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CCSPMethod.cpp.new copasi/tssanalysis/CCSPMethod.cpp + touch -r copasi/tssanalysis/CCSPMethod.cpp copasi/tssanalysis/CCSPMethod.cpp.new + mv copasi/tssanalysis/CCSPMethod.cpp.new copasi/tssanalysis/CCSPMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSATask.cpp.new copasi/tssanalysis/CTSSATask.cpp + touch -r copasi/tssanalysis/CTSSATask.cpp copasi/tssanalysis/CTSSATask.cpp.new + mv copasi/tssanalysis/CTSSATask.cpp.new copasi/tssanalysis/CTSSATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CObjectLists.cpp.new copasi/model/CObjectLists.cpp + touch -r copasi/model/CObjectLists.cpp copasi/model/CObjectLists.cpp.new + mv copasi/model/CObjectLists.cpp.new copasi/model/CObjectLists.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMetab.cpp.new copasi/model/CMetab.cpp + touch -r copasi/model/CMetab.cpp copasi/model/CMetab.cpp.new + mv copasi/model/CMetab.cpp.new copasi/model/CMetab.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser.cpp.new copasi/model/CChemEqParser.cpp + touch -r copasi/model/CChemEqParser.cpp copasi/model/CChemEqParser.cpp.new + mv copasi/model/CChemEqParser.cpp.new copasi/model/CChemEqParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelAnalyzer.cpp.new copasi/model/CModelAnalyzer.cpp + touch -r copasi/model/CModelAnalyzer.cpp copasi/model/CModelAnalyzer.cpp.new + mv copasi/model/CModelAnalyzer.cpp.new copasi/model/CModelAnalyzer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEq.cpp.new copasi/model/CChemEq.cpp + touch -r copasi/model/CChemEq.cpp copasi/model/CChemEq.cpp.new + mv copasi/model/CChemEq.cpp.new copasi/model/CChemEq.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CCompartment.cpp.new copasi/model/CCompartment.cpp + touch -r copasi/model/CCompartment.cpp copasi/model/CCompartment.cpp.new + mv copasi/model/CCompartment.cpp.new copasi/model/CCompartment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModel.cpp.new copasi/model/CModel.cpp + touch -r copasi/model/CModel.cpp copasi/model/CModel.cpp.new + mv copasi/model/CModel.cpp.new copasi/model/CModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameter.cpp.new copasi/model/CModelParameter.cpp + touch -r copasi/model/CModelParameter.cpp copasi/model/CModelParameter.cpp.new + mv copasi/model/CModelParameter.cpp.new copasi/model/CModelParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMMLOutput.cpp.new copasi/model/CMMLOutput.cpp + touch -r copasi/model/CMMLOutput.cpp copasi/model/CMMLOutput.cpp.new + mv copasi/model/CMMLOutput.cpp.new copasi/model/CMMLOutput.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameterGroup.cpp.new copasi/model/CModelParameterGroup.cpp + touch -r copasi/model/CModelParameterGroup.cpp copasi/model/CModelParameterGroup.cpp.new + mv copasi/model/CModelParameterGroup.cpp.new copasi/model/CModelParameterGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CReaction.cpp.new copasi/model/CReaction.cpp + touch -r copasi/model/CReaction.cpp copasi/model/CReaction.cpp.new + mv copasi/model/CReaction.cpp.new copasi/model/CReaction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser_lex.cpp.new copasi/model/CChemEqParser_lex.cpp + touch -r copasi/model/CChemEqParser_lex.cpp copasi/model/CChemEqParser_lex.cpp.new + mv copasi/model/CChemEqParser_lex.cpp.new copasi/model/CChemEqParser_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqInterface.cpp.new copasi/model/CChemEqInterface.cpp + touch -r copasi/model/CChemEqInterface.cpp copasi/model/CChemEqInterface.cpp.new + mv copasi/model/CChemEqInterface.cpp.new copasi/model/CChemEqInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelMerging.cpp.new copasi/model/CModelMerging.cpp + touch -r copasi/model/CModelMerging.cpp copasi/model/CModelMerging.cpp.new + mv copasi/model/CModelMerging.cpp.new copasi/model/CModelMerging.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelExpansion.cpp.new copasi/model/CModelExpansion.cpp + touch -r copasi/model/CModelExpansion.cpp copasi/model/CModelExpansion.cpp.new + mv copasi/model/CModelExpansion.cpp.new copasi/model/CModelExpansion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CState.cpp.new copasi/model/CState.cpp + touch -r copasi/model/CState.cpp copasi/model/CState.cpp.new + mv copasi/model/CState.cpp.new copasi/model/CState.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMetabNameInterface.cpp.new copasi/model/CMetabNameInterface.cpp + touch -r copasi/model/CMetabNameInterface.cpp copasi/model/CMetabNameInterface.cpp.new + mv copasi/model/CMetabNameInterface.cpp.new copasi/model/CMetabNameInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelValue.cpp.new copasi/model/CModelValue.cpp + touch -r copasi/model/CModelValue.cpp copasi/model/CModelValue.cpp.new + mv copasi/model/CModelValue.cpp.new copasi/model/CModelValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CAnnotation.cpp.new copasi/model/CAnnotation.cpp + touch -r copasi/model/CAnnotation.cpp copasi/model/CAnnotation.cpp.new + mv copasi/model/CAnnotation.cpp.new copasi/model/CAnnotation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CReactionInterface.cpp.new copasi/model/CReactionInterface.cpp + touch -r copasi/model/CReactionInterface.cpp copasi/model/CReactionInterface.cpp.new + mv copasi/model/CReactionInterface.cpp.new copasi/model/CReactionInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CEvent.cpp.new copasi/model/CEvent.cpp + touch -r copasi/model/CEvent.cpp copasi/model/CEvent.cpp.new + mv copasi/model/CEvent.cpp.new copasi/model/CEvent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMoiety.cpp.new copasi/model/CMoiety.cpp + touch -r copasi/model/CMoiety.cpp copasi/model/CMoiety.cpp.new + mv copasi/model/CMoiety.cpp.new copasi/model/CMoiety.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameterSet.cpp.new copasi/model/CModelParameterSet.cpp + touch -r copasi/model/CModelParameterSet.cpp copasi/model/CModelParameterSet.cpp.new + mv copasi/model/CModelParameterSet.cpp.new copasi/model/CModelParameterSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqElement.cpp.new copasi/model/CChemEqElement.cpp + touch -r copasi/model/CChemEqElement.cpp copasi/model/CChemEqElement.cpp.new + mv copasi/model/CChemEqElement.cpp.new copasi/model/CChemEqElement.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser_yacc.cpp.new copasi/model/CChemEqParser_yacc.cpp + touch -r copasi/model/CChemEqParser_yacc.cpp copasi/model/CChemEqParser_yacc.cpp.new + mv copasi/model/CChemEqParser_yacc.cpp.new copasi/model/CChemEqParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/main.cpp.new copasi/ViewCurrentUI/main.cpp + touch -r copasi/ViewCurrentUI/main.cpp copasi/ViewCurrentUI/main.cpp.new + mv copasi/ViewCurrentUI/main.cpp.new copasi/ViewCurrentUI/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/arguments.cpp.new copasi/ViewCurrentUI/arguments.cpp + touch -r copasi/ViewCurrentUI/arguments.cpp copasi/ViewCurrentUI/arguments.cpp.new + mv copasi/ViewCurrentUI/arguments.cpp.new copasi/ViewCurrentUI/arguments.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/worker.cpp.new copasi/ViewCurrentUI/worker.cpp + touch -r copasi/ViewCurrentUI/worker.cpp copasi/ViewCurrentUI/worker.cpp.new + mv copasi/ViewCurrentUI/worker.cpp.new copasi/ViewCurrentUI/worker.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CRootContainer.cpp.new copasi/core/CRootContainer.cpp + touch -r copasi/core/CRootContainer.cpp copasi/core/CRootContainer.cpp.new + mv copasi/core/CRootContainer.cpp.new copasi/core/CRootContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CCommonName.cpp.new copasi/core/CCommonName.cpp + touch -r copasi/core/CCommonName.cpp copasi/core/CCommonName.cpp.new + mv copasi/core/CCommonName.cpp.new copasi/core/CCommonName.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataContainer.cpp.new copasi/core/CDataContainer.cpp + touch -r copasi/core/CDataContainer.cpp copasi/core/CDataContainer.cpp.new + mv copasi/core/CDataContainer.cpp.new copasi/core/CDataContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CArray.cpp.new copasi/core/CArray.cpp + touch -r copasi/core/CArray.cpp copasi/core/CArray.cpp.new + mv copasi/core/CArray.cpp.new copasi/core/CArray.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataString.cpp.new copasi/core/CDataString.cpp + touch -r copasi/core/CDataString.cpp copasi/core/CDataString.cpp.new + mv copasi/core/CDataString.cpp.new copasi/core/CDataString.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataArray.cpp.new copasi/core/CDataArray.cpp + touch -r copasi/core/CDataArray.cpp copasi/core/CDataArray.cpp.new + mv copasi/core/CDataArray.cpp.new copasi/core/CDataArray.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CRegisteredCommonName.cpp.new copasi/core/CRegisteredCommonName.cpp + touch -r copasi/core/CRegisteredCommonName.cpp copasi/core/CRegisteredCommonName.cpp.new + mv copasi/core/CRegisteredCommonName.cpp.new copasi/core/CRegisteredCommonName.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataArrayElementReference.cpp.new copasi/core/CDataArrayElementReference.cpp + touch -r copasi/core/CDataArrayElementReference.cpp copasi/core/CDataArrayElementReference.cpp.new + mv copasi/core/CDataArrayElementReference.cpp.new copasi/core/CDataArrayElementReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataObject.cpp.new copasi/core/CDataObject.cpp + touch -r copasi/core/CDataObject.cpp copasi/core/CDataObject.cpp.new + mv copasi/core/CDataObject.cpp.new copasi/core/CDataObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataTimer.cpp.new copasi/core/CDataTimer.cpp + touch -r copasi/core/CDataTimer.cpp copasi/core/CDataTimer.cpp.new + mv copasi/core/CDataTimer.cpp.new copasi/core/CDataTimer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CObjectInterface.cpp.new copasi/core/CObjectInterface.cpp + touch -r copasi/core/CObjectInterface.cpp copasi/core/CObjectInterface.cpp.new + mv copasi/core/CObjectInterface.cpp.new copasi/core/CObjectInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterTextHandler.cpp.new copasi/xml/parser/ParameterTextHandler.cpp + touch -r copasi/xml/parser/ParameterTextHandler.cpp copasi/xml/parser/ParameterTextHandler.cpp.new + mv copasi/xml/parser/ParameterTextHandler.cpp.new copasi/xml/parser/ParameterTextHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StateTemplateHandler.cpp.new copasi/xml/parser/StateTemplateHandler.cpp + touch -r copasi/xml/parser/StateTemplateHandler.cpp copasi/xml/parser/StateTemplateHandler.cpp.new + mv copasi/xml/parser/StateTemplateHandler.cpp.new copasi/xml/parser/StateTemplateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLParser.cpp.new copasi/xml/parser/CXMLParser.cpp + touch -r copasi/xml/parser/CXMLParser.cpp copasi/xml/parser/CXMLParser.cpp.new + mv copasi/xml/parser/CXMLParser.cpp.new copasi/xml/parser/CXMLParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UNKNOWNHandler.cpp.new copasi/xml/parser/UNKNOWNHandler.cpp + touch -r copasi/xml/parser/UNKNOWNHandler.cpp copasi/xml/parser/UNKNOWNHandler.cpp.new + mv copasi/xml/parser/UNKNOWNHandler.cpp.new copasi/xml/parser/UNKNOWNHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LineSegmentHandler.cpp.new copasi/xml/parser/LineSegmentHandler.cpp + touch -r copasi/xml/parser/LineSegmentHandler.cpp copasi/xml/parser/LineSegmentHandler.cpp.new + mv copasi/xml/parser/LineSegmentHandler.cpp.new copasi/xml/parser/LineSegmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfLayoutsHandler.cpp.new copasi/xml/parser/ListOfLayoutsHandler.cpp + touch -r copasi/xml/parser/ListOfLayoutsHandler.cpp copasi/xml/parser/ListOfLayoutsHandler.cpp.new + mv copasi/xml/parser/ListOfLayoutsHandler.cpp.new copasi/xml/parser/ListOfLayoutsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new copasi/xml/parser/UnsupportedAnnotationHandler.cpp + touch -r copasi/xml/parser/UnsupportedAnnotationHandler.cpp copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new + mv copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new copasi/xml/parser/UnsupportedAnnotationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelValueHandler.cpp.new copasi/xml/parser/ModelValueHandler.cpp + touch -r copasi/xml/parser/ModelValueHandler.cpp copasi/xml/parser/ModelValueHandler.cpp.new + mv copasi/xml/parser/ModelValueHandler.cpp.new copasi/xml/parser/ModelValueHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterGroupHandler.cpp.new copasi/xml/parser/ParameterGroupHandler.cpp + touch -r copasi/xml/parser/ParameterGroupHandler.cpp copasi/xml/parser/ParameterGroupHandler.cpp.new + mv copasi/xml/parser/ParameterGroupHandler.cpp.new copasi/xml/parser/ParameterGroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportSectionHandler.cpp.new copasi/xml/parser/ReportSectionHandler.cpp + touch -r copasi/xml/parser/ReportSectionHandler.cpp copasi/xml/parser/ReportSectionHandler.cpp.new + mv copasi/xml/parser/ReportSectionHandler.cpp.new copasi/xml/parser/ReportSectionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLHandlerFactory.cpp.new copasi/xml/parser/CXMLHandlerFactory.cpp + touch -r copasi/xml/parser/CXMLHandlerFactory.cpp copasi/xml/parser/CXMLHandlerFactory.cpp.new + mv copasi/xml/parser/CXMLHandlerFactory.cpp.new copasi/xml/parser/CXMLHandlerFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LineEndingHandler.cpp.new copasi/xml/parser/LineEndingHandler.cpp + touch -r copasi/xml/parser/LineEndingHandler.cpp copasi/xml/parser/LineEndingHandler.cpp.new + mv copasi/xml/parser/LineEndingHandler.cpp.new copasi/xml/parser/LineEndingHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/KineticLawHandler.cpp.new copasi/xml/parser/KineticLawHandler.cpp + touch -r copasi/xml/parser/KineticLawHandler.cpp copasi/xml/parser/KineticLawHandler.cpp.new + mv copasi/xml/parser/KineticLawHandler.cpp.new copasi/xml/parser/KineticLawHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterGroupHandler.cpp.new copasi/xml/parser/ModelParameterGroupHandler.cpp + touch -r copasi/xml/parser/ModelParameterGroupHandler.cpp copasi/xml/parser/ModelParameterGroupHandler.cpp.new + mv copasi/xml/parser/ModelParameterGroupHandler.cpp.new copasi/xml/parser/ModelParameterGroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteHandler.cpp.new copasi/xml/parser/MetaboliteHandler.cpp + touch -r copasi/xml/parser/MetaboliteHandler.cpp copasi/xml/parser/MetaboliteHandler.cpp.new + mv copasi/xml/parser/MetaboliteHandler.cpp.new copasi/xml/parser/MetaboliteHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MiriamAnnotationHandler.cpp.new copasi/xml/parser/MiriamAnnotationHandler.cpp + touch -r copasi/xml/parser/MiriamAnnotationHandler.cpp copasi/xml/parser/MiriamAnnotationHandler.cpp.new + mv copasi/xml/parser/MiriamAnnotationHandler.cpp.new copasi/xml/parser/MiriamAnnotationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderCurveElementHandler.cpp.new copasi/xml/parser/RenderCurveElementHandler.cpp + touch -r copasi/xml/parser/RenderCurveElementHandler.cpp copasi/xml/parser/RenderCurveElementHandler.cpp.new + mv copasi/xml/parser/RenderCurveElementHandler.cpp.new copasi/xml/parser/RenderCurveElementHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterSetHandler.cpp.new copasi/xml/parser/ModelParameterSetHandler.cpp + touch -r copasi/xml/parser/ModelParameterSetHandler.cpp copasi/xml/parser/ModelParameterSetHandler.cpp.new + mv copasi/xml/parser/ModelParameterSetHandler.cpp.new copasi/xml/parser/ModelParameterSetHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SliderHandler.cpp.new copasi/xml/parser/SliderHandler.cpp + touch -r copasi/xml/parser/SliderHandler.cpp copasi/xml/parser/SliderHandler.cpp.new + mv copasi/xml/parser/SliderHandler.cpp.new copasi/xml/parser/SliderHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportTargetHandler.cpp.new copasi/xml/parser/ReportTargetHandler.cpp + touch -r copasi/xml/parser/ReportTargetHandler.cpp copasi/xml/parser/ReportTargetHandler.cpp.new + mv copasi/xml/parser/ReportTargetHandler.cpp.new copasi/xml/parser/ReportTargetHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MethodHandler.cpp.new copasi/xml/parser/MethodHandler.cpp + touch -r copasi/xml/parser/MethodHandler.cpp copasi/xml/parser/MethodHandler.cpp.new + mv copasi/xml/parser/MethodHandler.cpp.new copasi/xml/parser/MethodHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CurveHandler.cpp.new copasi/xml/parser/CurveHandler.cpp + touch -r copasi/xml/parser/CurveHandler.cpp copasi/xml/parser/CurveHandler.cpp.new + mv copasi/xml/parser/CurveHandler.cpp.new copasi/xml/parser/CurveHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CubicBezierHandler.cpp.new copasi/xml/parser/CubicBezierHandler.cpp + touch -r copasi/xml/parser/CubicBezierHandler.cpp copasi/xml/parser/CubicBezierHandler.cpp.new + mv copasi/xml/parser/CubicBezierHandler.cpp.new copasi/xml/parser/CubicBezierHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MathMLHandler.cpp.new copasi/xml/parser/MathMLHandler.cpp + touch -r copasi/xml/parser/MathMLHandler.cpp copasi/xml/parser/MathMLHandler.cpp.new + mv copasi/xml/parser/MathMLHandler.cpp.new copasi/xml/parser/MathMLHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TableHandler.cpp.new copasi/xml/parser/TableHandler.cpp + touch -r copasi/xml/parser/TableHandler.cpp copasi/xml/parser/TableHandler.cpp.new + mv copasi/xml/parser/TableHandler.cpp.new copasi/xml/parser/TableHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CompartmentGlyphHandler.cpp.new copasi/xml/parser/CompartmentGlyphHandler.cpp + touch -r copasi/xml/parser/CompartmentGlyphHandler.cpp copasi/xml/parser/CompartmentGlyphHandler.cpp.new + mv copasi/xml/parser/CompartmentGlyphHandler.cpp.new copasi/xml/parser/CompartmentGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GUIHandler.cpp.new copasi/xml/parser/GUIHandler.cpp + touch -r copasi/xml/parser/GUIHandler.cpp copasi/xml/parser/GUIHandler.cpp.new + mv copasi/xml/parser/GUIHandler.cpp.new copasi/xml/parser/GUIHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PlotItemHandler.cpp.new copasi/xml/parser/PlotItemHandler.cpp + touch -r copasi/xml/parser/PlotItemHandler.cpp copasi/xml/parser/PlotItemHandler.cpp.new + mv copasi/xml/parser/PlotItemHandler.cpp.new copasi/xml/parser/PlotItemHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StateTemplateVariableHandler.cpp.new copasi/xml/parser/StateTemplateVariableHandler.cpp + touch -r copasi/xml/parser/StateTemplateVariableHandler.cpp copasi/xml/parser/StateTemplateVariableHandler.cpp.new + mv copasi/xml/parser/StateTemplateVariableHandler.cpp.new copasi/xml/parser/StateTemplateVariableHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TaskHandler.cpp.new copasi/xml/parser/TaskHandler.cpp + touch -r copasi/xml/parser/TaskHandler.cpp copasi/xml/parser/TaskHandler.cpp.new + mv copasi/xml/parser/TaskHandler.cpp.new copasi/xml/parser/TaskHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderTextHandler.cpp.new copasi/xml/parser/RenderTextHandler.cpp + touch -r copasi/xml/parser/RenderTextHandler.cpp copasi/xml/parser/RenderTextHandler.cpp.new + mv copasi/xml/parser/RenderTextHandler.cpp.new copasi/xml/parser/RenderTextHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterHandler.cpp.new copasi/xml/parser/ParameterHandler.cpp + touch -r copasi/xml/parser/ParameterHandler.cpp copasi/xml/parser/ParameterHandler.cpp.new + mv copasi/xml/parser/ParameterHandler.cpp.new copasi/xml/parser/ParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/DimensionsHandler.cpp.new copasi/xml/parser/DimensionsHandler.cpp + touch -r copasi/xml/parser/DimensionsHandler.cpp copasi/xml/parser/DimensionsHandler.cpp.new + mv copasi/xml/parser/DimensionsHandler.cpp.new copasi/xml/parser/DimensionsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp + touch -r copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new + mv copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GradientStopHandler.cpp.new copasi/xml/parser/GradientStopHandler.cpp + touch -r copasi/xml/parser/GradientStopHandler.cpp copasi/xml/parser/GradientStopHandler.cpp.new + mv copasi/xml/parser/GradientStopHandler.cpp.new copasi/xml/parser/GradientStopHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReactionHandler.cpp.new copasi/xml/parser/ReactionHandler.cpp + touch -r copasi/xml/parser/ReactionHandler.cpp copasi/xml/parser/ReactionHandler.cpp.new + mv copasi/xml/parser/ReactionHandler.cpp.new copasi/xml/parser/ReactionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RadialGradientHandler.cpp.new copasi/xml/parser/RadialGradientHandler.cpp + touch -r copasi/xml/parser/RadialGradientHandler.cpp copasi/xml/parser/RadialGradientHandler.cpp.new + mv copasi/xml/parser/RadialGradientHandler.cpp.new copasi/xml/parser/RadialGradientHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp + touch -r copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new + mv copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PointHandler.cpp.new copasi/xml/parser/PointHandler.cpp + touch -r copasi/xml/parser/PointHandler.cpp copasi/xml/parser/PointHandler.cpp.new + mv copasi/xml/parser/PointHandler.cpp.new copasi/xml/parser/PointHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterDescriptionHandler.cpp.new copasi/xml/parser/ParameterDescriptionHandler.cpp + touch -r copasi/xml/parser/ParameterDescriptionHandler.cpp copasi/xml/parser/ParameterDescriptionHandler.cpp.new + mv copasi/xml/parser/ParameterDescriptionHandler.cpp.new copasi/xml/parser/ParameterDescriptionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ProductHandler.cpp.new copasi/xml/parser/ProductHandler.cpp + touch -r copasi/xml/parser/ProductHandler.cpp copasi/xml/parser/ProductHandler.cpp.new + mv copasi/xml/parser/ProductHandler.cpp.new copasi/xml/parser/ProductHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ColorDefinitionHandler.cpp.new copasi/xml/parser/ColorDefinitionHandler.cpp + touch -r copasi/xml/parser/ColorDefinitionHandler.cpp copasi/xml/parser/ColorDefinitionHandler.cpp.new + mv copasi/xml/parser/ColorDefinitionHandler.cpp.new copasi/xml/parser/ColorDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ChannelSpecHandler.cpp.new copasi/xml/parser/ChannelSpecHandler.cpp + touch -r copasi/xml/parser/ChannelSpecHandler.cpp copasi/xml/parser/ChannelSpecHandler.cpp.new + mv copasi/xml/parser/ChannelSpecHandler.cpp.new copasi/xml/parser/ChannelSpecHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ImageHandler.cpp.new copasi/xml/parser/ImageHandler.cpp + touch -r copasi/xml/parser/ImageHandler.cpp copasi/xml/parser/ImageHandler.cpp.new + mv copasi/xml/parser/ImageHandler.cpp.new copasi/xml/parser/ImageHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CompartmentHandler.cpp.new copasi/xml/parser/CompartmentHandler.cpp + touch -r copasi/xml/parser/CompartmentHandler.cpp copasi/xml/parser/CompartmentHandler.cpp.new + mv copasi/xml/parser/CompartmentHandler.cpp.new copasi/xml/parser/CompartmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TextGlyphHandler.cpp.new copasi/xml/parser/TextGlyphHandler.cpp + touch -r copasi/xml/parser/TextGlyphHandler.cpp copasi/xml/parser/TextGlyphHandler.cpp.new + mv copasi/xml/parser/TextGlyphHandler.cpp.new copasi/xml/parser/TextGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CharacterDataHandler.cpp.new copasi/xml/parser/CharacterDataHandler.cpp + touch -r copasi/xml/parser/CharacterDataHandler.cpp copasi/xml/parser/CharacterDataHandler.cpp.new + mv copasi/xml/parser/CharacterDataHandler.cpp.new copasi/xml/parser/CharacterDataHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/FunctionHandler.cpp.new copasi/xml/parser/FunctionHandler.cpp + touch -r copasi/xml/parser/FunctionHandler.cpp copasi/xml/parser/FunctionHandler.cpp.new + mv copasi/xml/parser/FunctionHandler.cpp.new copasi/xml/parser/FunctionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/COPASIHandler.cpp.new copasi/xml/parser/COPASIHandler.cpp + touch -r copasi/xml/parser/COPASIHandler.cpp copasi/xml/parser/COPASIHandler.cpp.new + mv copasi/xml/parser/COPASIHandler.cpp.new copasi/xml/parser/COPASIHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LinearGradientHandler.cpp.new copasi/xml/parser/LinearGradientHandler.cpp + touch -r copasi/xml/parser/LinearGradientHandler.cpp copasi/xml/parser/LinearGradientHandler.cpp.new + mv copasi/xml/parser/LinearGradientHandler.cpp.new copasi/xml/parser/LinearGradientHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PlotSpecificationHandler.cpp.new copasi/xml/parser/PlotSpecificationHandler.cpp + touch -r copasi/xml/parser/PlotSpecificationHandler.cpp copasi/xml/parser/PlotSpecificationHandler.cpp.new + mv copasi/xml/parser/PlotSpecificationHandler.cpp.new copasi/xml/parser/PlotSpecificationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelHandler.cpp.new copasi/xml/parser/ModelHandler.cpp + touch -r copasi/xml/parser/ModelHandler.cpp copasi/xml/parser/ModelHandler.cpp.new + mv copasi/xml/parser/ModelHandler.cpp.new copasi/xml/parser/ModelHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SubstrateHandler.cpp.new copasi/xml/parser/SubstrateHandler.cpp + touch -r copasi/xml/parser/SubstrateHandler.cpp copasi/xml/parser/SubstrateHandler.cpp.new + mv copasi/xml/parser/SubstrateHandler.cpp.new copasi/xml/parser/SubstrateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CallParameterHandler.cpp.new copasi/xml/parser/CallParameterHandler.cpp + touch -r copasi/xml/parser/CallParameterHandler.cpp copasi/xml/parser/CallParameterHandler.cpp.new + mv copasi/xml/parser/CallParameterHandler.cpp.new copasi/xml/parser/CallParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp + touch -r copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new + mv copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UnitDefinitionHandler.cpp.new copasi/xml/parser/UnitDefinitionHandler.cpp + touch -r copasi/xml/parser/UnitDefinitionHandler.cpp copasi/xml/parser/UnitDefinitionHandler.cpp.new + mv copasi/xml/parser/UnitDefinitionHandler.cpp.new copasi/xml/parser/UnitDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ObjectHandler.cpp.new copasi/xml/parser/ObjectHandler.cpp + touch -r copasi/xml/parser/ObjectHandler.cpp copasi/xml/parser/ObjectHandler.cpp.new + mv copasi/xml/parser/ObjectHandler.cpp.new copasi/xml/parser/ObjectHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderInformationHandler.cpp.new copasi/xml/parser/RenderInformationHandler.cpp + touch -r copasi/xml/parser/RenderInformationHandler.cpp copasi/xml/parser/RenderInformationHandler.cpp.new + mv copasi/xml/parser/RenderInformationHandler.cpp.new copasi/xml/parser/RenderInformationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLParserData.cpp.new copasi/xml/parser/CXMLParserData.cpp + touch -r copasi/xml/parser/CXMLParserData.cpp copasi/xml/parser/CXMLParserData.cpp.new + mv copasi/xml/parser/CXMLParserData.cpp.new copasi/xml/parser/CXMLParserData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfHandler.cpp.new copasi/xml/parser/ListOfHandler.cpp + touch -r copasi/xml/parser/ListOfHandler.cpp copasi/xml/parser/ListOfHandler.cpp.new + mv copasi/xml/parser/ListOfHandler.cpp.new copasi/xml/parser/ListOfHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SBMLMapHandler.cpp.new copasi/xml/parser/SBMLMapHandler.cpp + touch -r copasi/xml/parser/SBMLMapHandler.cpp copasi/xml/parser/SBMLMapHandler.cpp.new + mv copasi/xml/parser/SBMLMapHandler.cpp.new copasi/xml/parser/SBMLMapHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ConstantHandler.cpp.new copasi/xml/parser/ConstantHandler.cpp + touch -r copasi/xml/parser/ConstantHandler.cpp copasi/xml/parser/ConstantHandler.cpp.new + mv copasi/xml/parser/ConstantHandler.cpp.new copasi/xml/parser/ConstantHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CommentHandler.cpp.new copasi/xml/parser/CommentHandler.cpp + touch -r copasi/xml/parser/CommentHandler.cpp copasi/xml/parser/CommentHandler.cpp.new + mv copasi/xml/parser/CommentHandler.cpp.new copasi/xml/parser/CommentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteGlyphHandler.cpp.new copasi/xml/parser/MetaboliteGlyphHandler.cpp + touch -r copasi/xml/parser/MetaboliteGlyphHandler.cpp copasi/xml/parser/MetaboliteGlyphHandler.cpp.new + mv copasi/xml/parser/MetaboliteGlyphHandler.cpp.new copasi/xml/parser/MetaboliteGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SourceParameterHandler.cpp.new copasi/xml/parser/SourceParameterHandler.cpp + touch -r copasi/xml/parser/SourceParameterHandler.cpp copasi/xml/parser/SourceParameterHandler.cpp.new + mv copasi/xml/parser/SourceParameterHandler.cpp.new copasi/xml/parser/SourceParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterHandler.cpp.new copasi/xml/parser/ModelParameterHandler.cpp + touch -r copasi/xml/parser/ModelParameterHandler.cpp copasi/xml/parser/ModelParameterHandler.cpp.new + mv copasi/xml/parser/ModelParameterHandler.cpp.new copasi/xml/parser/ModelParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModifierHandler.cpp.new copasi/xml/parser/ModifierHandler.cpp + touch -r copasi/xml/parser/ModifierHandler.cpp copasi/xml/parser/ModifierHandler.cpp.new + mv copasi/xml/parser/ModifierHandler.cpp.new copasi/xml/parser/ModifierHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/EllipseHandler.cpp.new copasi/xml/parser/EllipseHandler.cpp + touch -r copasi/xml/parser/EllipseHandler.cpp copasi/xml/parser/EllipseHandler.cpp.new + mv copasi/xml/parser/EllipseHandler.cpp.new copasi/xml/parser/EllipseHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/AssignmentHandler.cpp.new copasi/xml/parser/AssignmentHandler.cpp + touch -r copasi/xml/parser/AssignmentHandler.cpp copasi/xml/parser/AssignmentHandler.cpp.new + mv copasi/xml/parser/AssignmentHandler.cpp.new copasi/xml/parser/AssignmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GroupHandler.cpp.new copasi/xml/parser/GroupHandler.cpp + touch -r copasi/xml/parser/GroupHandler.cpp copasi/xml/parser/GroupHandler.cpp.new + mv copasi/xml/parser/GroupHandler.cpp.new copasi/xml/parser/GroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportDefinitionHandler.cpp.new copasi/xml/parser/ReportDefinitionHandler.cpp + touch -r copasi/xml/parser/ReportDefinitionHandler.cpp copasi/xml/parser/ReportDefinitionHandler.cpp.new + mv copasi/xml/parser/ReportDefinitionHandler.cpp.new copasi/xml/parser/ReportDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PolygonHandler.cpp.new copasi/xml/parser/PolygonHandler.cpp + touch -r copasi/xml/parser/PolygonHandler.cpp copasi/xml/parser/PolygonHandler.cpp.new + mv copasi/xml/parser/PolygonHandler.cpp.new copasi/xml/parser/PolygonHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LayoutHandler.cpp.new copasi/xml/parser/LayoutHandler.cpp + touch -r copasi/xml/parser/LayoutHandler.cpp copasi/xml/parser/LayoutHandler.cpp.new + mv copasi/xml/parser/LayoutHandler.cpp.new copasi/xml/parser/LayoutHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/BoundingBoxHandler.cpp.new copasi/xml/parser/BoundingBoxHandler.cpp + touch -r copasi/xml/parser/BoundingBoxHandler.cpp copasi/xml/parser/BoundingBoxHandler.cpp.new + mv copasi/xml/parser/BoundingBoxHandler.cpp.new copasi/xml/parser/BoundingBoxHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReactionGlyphHandler.cpp.new copasi/xml/parser/ReactionGlyphHandler.cpp + touch -r copasi/xml/parser/ReactionGlyphHandler.cpp copasi/xml/parser/ReactionGlyphHandler.cpp.new + mv copasi/xml/parser/ReactionGlyphHandler.cpp.new copasi/xml/parser/ReactionGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderCurveHandler.cpp.new copasi/xml/parser/RenderCurveHandler.cpp + touch -r copasi/xml/parser/RenderCurveHandler.cpp copasi/xml/parser/RenderCurveHandler.cpp.new + mv copasi/xml/parser/RenderCurveHandler.cpp.new copasi/xml/parser/RenderCurveHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/InitialStateHandler.cpp.new copasi/xml/parser/InitialStateHandler.cpp + touch -r copasi/xml/parser/InitialStateHandler.cpp copasi/xml/parser/InitialStateHandler.cpp.new + mv copasi/xml/parser/InitialStateHandler.cpp.new copasi/xml/parser/InitialStateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLHandler.cpp.new copasi/xml/parser/CXMLHandler.cpp + touch -r copasi/xml/parser/CXMLHandler.cpp copasi/xml/parser/CXMLHandler.cpp.new + mv copasi/xml/parser/CXMLHandler.cpp.new copasi/xml/parser/CXMLHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StyleHandler.cpp.new copasi/xml/parser/StyleHandler.cpp + touch -r copasi/xml/parser/StyleHandler.cpp copasi/xml/parser/StyleHandler.cpp.new + mv copasi/xml/parser/StyleHandler.cpp.new copasi/xml/parser/StyleHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RectangleHandler.cpp.new copasi/xml/parser/RectangleHandler.cpp + touch -r copasi/xml/parser/RectangleHandler.cpp copasi/xml/parser/RectangleHandler.cpp.new + mv copasi/xml/parser/RectangleHandler.cpp.new copasi/xml/parser/RectangleHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/EventHandler.cpp.new copasi/xml/parser/EventHandler.cpp + touch -r copasi/xml/parser/EventHandler.cpp copasi/xml/parser/EventHandler.cpp.new + mv copasi/xml/parser/EventHandler.cpp.new copasi/xml/parser/EventHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new copasi/xml/parser/ListOfCurveSegmentsHandler.cpp + touch -r copasi/xml/parser/ListOfCurveSegmentsHandler.cpp copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new + mv copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new copasi/xml/parser/ListOfCurveSegmentsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CCopasiXMLInterface.cpp.new copasi/xml/CCopasiXMLInterface.cpp + touch -r copasi/xml/CCopasiXMLInterface.cpp copasi/xml/CCopasiXMLInterface.cpp.new + mv copasi/xml/CCopasiXMLInterface.cpp.new copasi/xml/CCopasiXMLInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CCopasiXML.cpp.new copasi/xml/CCopasiXML.cpp + touch -r copasi/xml/CCopasiXML.cpp copasi/xml/CCopasiXML.cpp.new + mv copasi/xml/CCopasiXML.cpp.new copasi/xml/CCopasiXML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CFixLocalReactionParameters.cpp.new copasi/xml/CFixLocalReactionParameters.cpp + touch -r copasi/xml/CFixLocalReactionParameters.cpp copasi/xml/CFixLocalReactionParameters.cpp.new + mv copasi/xml/CFixLocalReactionParameters.cpp.new copasi/xml/CFixLocalReactionParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CExpat.cpp.new copasi/xml/CExpat.cpp + touch -r copasi/xml/CExpat.cpp copasi/xml/CExpat.cpp.new + mv copasi/xml/CExpat.cpp.new copasi/xml/CExpat.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tex/CStructureParser.cpp.new copasi/tex/CStructureParser.cpp + touch -r copasi/tex/CStructureParser.cpp copasi/tex/CStructureParser.cpp.new + mv copasi/tex/CStructureParser.cpp.new copasi/tex/CStructureParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tex/CMathMLToTeX.cpp.new copasi/tex/CMathMLToTeX.cpp + touch -r copasi/tex/CMathMLToTeX.cpp copasi/tex/CMathMLToTeX.cpp.new + mv copasi/tex/CMathMLToTeX.cpp.new copasi/tex/CMathMLToTeX.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoData.cpp.new copasi/undo/CUndoData.cpp + touch -r copasi/undo/CUndoData.cpp copasi/undo/CUndoData.cpp.new + mv copasi/undo/CUndoData.cpp.new copasi/undo/CUndoData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CData.cpp.new copasi/undo/CData.cpp + touch -r copasi/undo/CData.cpp copasi/undo/CData.cpp.new + mv copasi/undo/CData.cpp.new copasi/undo/CData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoStack.cpp.new copasi/undo/CUndoStack.cpp + touch -r copasi/undo/CUndoStack.cpp copasi/undo/CUndoStack.cpp.new + mv copasi/undo/CUndoStack.cpp.new copasi/undo/CUndoStack.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CDataValue.cpp.new copasi/undo/CDataValue.cpp + touch -r copasi/undo/CDataValue.cpp copasi/undo/CDataValue.cpp.new + mv copasi/undo/CDataValue.cpp.new copasi/undo/CDataValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSRES.cpp.new copasi/optimization/COptMethodSRES.cpp + touch -r copasi/optimization/COptMethodSRES.cpp copasi/optimization/COptMethodSRES.cpp.new + mv copasi/optimization/COptMethodSRES.cpp.new copasi/optimization/COptMethodSRES.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSA.cpp.new copasi/optimization/COptMethodSA.cpp + touch -r copasi/optimization/COptMethodSA.cpp copasi/optimization/COptMethodSA.cpp.new + mv copasi/optimization/COptMethodSA.cpp.new copasi/optimization/COptMethodSA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodPraxis.cpp.new copasi/optimization/COptMethodPraxis.cpp + touch -r copasi/optimization/COptMethodPraxis.cpp copasi/optimization/COptMethodPraxis.cpp.new + mv copasi/optimization/COptMethodPraxis.cpp.new copasi/optimization/COptMethodPraxis.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodHookeJeeves.cpp.new copasi/optimization/COptMethodHookeJeeves.cpp + touch -r copasi/optimization/COptMethodHookeJeeves.cpp copasi/optimization/COptMethodHookeJeeves.cpp.new + mv copasi/optimization/COptMethodHookeJeeves.cpp.new copasi/optimization/COptMethodHookeJeeves.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodPS.cpp.new copasi/optimization/COptMethodPS.cpp + touch -r copasi/optimization/COptMethodPS.cpp copasi/optimization/COptMethodPS.cpp.new + mv copasi/optimization/COptMethodPS.cpp.new copasi/optimization/COptMethodPS.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CRealProblem.cpp.new copasi/optimization/CRealProblem.cpp + touch -r copasi/optimization/CRealProblem.cpp copasi/optimization/CRealProblem.cpp.new + mv copasi/optimization/CRealProblem.cpp.new copasi/optimization/CRealProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodEP.cpp.new copasi/optimization/COptMethodEP.cpp + touch -r copasi/optimization/COptMethodEP.cpp copasi/optimization/COptMethodEP.cpp.new + mv copasi/optimization/COptMethodEP.cpp.new copasi/optimization/COptMethodEP.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodNelderMead.cpp.new copasi/optimization/COptMethodNelderMead.cpp + touch -r copasi/optimization/COptMethodNelderMead.cpp copasi/optimization/COptMethodNelderMead.cpp.new + mv copasi/optimization/COptMethodNelderMead.cpp.new copasi/optimization/COptMethodNelderMead.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CPraxis.cpp.new copasi/optimization/CPraxis.cpp + touch -r copasi/optimization/CPraxis.cpp copasi/optimization/CPraxis.cpp.new + mv copasi/optimization/CPraxis.cpp.new copasi/optimization/CPraxis.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodDE.cpp.new copasi/optimization/COptMethodDE.cpp + touch -r copasi/optimization/COptMethodDE.cpp copasi/optimization/COptMethodDE.cpp.new + mv copasi/optimization/COptMethodDE.cpp.new copasi/optimization/COptMethodDE.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptProblem.cpp.new copasi/optimization/COptProblem.cpp + touch -r copasi/optimization/COptProblem.cpp copasi/optimization/COptProblem.cpp.new + mv copasi/optimization/COptProblem.cpp.new copasi/optimization/COptProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSS.cpp.new copasi/optimization/COptMethodSS.cpp + touch -r copasi/optimization/COptMethodSS.cpp copasi/optimization/COptMethodSS.cpp.new + mv copasi/optimization/COptMethodSS.cpp.new copasi/optimization/COptMethodSS.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLog.cpp.new copasi/optimization/COptLog.cpp + touch -r copasi/optimization/COptLog.cpp copasi/optimization/COptLog.cpp.new + mv copasi/optimization/COptLog.cpp.new copasi/optimization/COptLog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSteepestDescent.cpp.new copasi/optimization/COptMethodSteepestDescent.cpp + touch -r copasi/optimization/COptMethodSteepestDescent.cpp copasi/optimization/COptMethodSteepestDescent.cpp.new + mv copasi/optimization/COptMethodSteepestDescent.cpp.new copasi/optimization/COptMethodSteepestDescent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodGASR.cpp.new copasi/optimization/COptMethodGASR.cpp + touch -r copasi/optimization/COptMethodGASR.cpp copasi/optimization/COptMethodGASR.cpp.new + mv copasi/optimization/COptMethodGASR.cpp.new copasi/optimization/COptMethodGASR.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodTruncatedNewton.cpp.new copasi/optimization/COptMethodTruncatedNewton.cpp + touch -r copasi/optimization/COptMethodTruncatedNewton.cpp copasi/optimization/COptMethodTruncatedNewton.cpp.new + mv copasi/optimization/COptMethodTruncatedNewton.cpp.new copasi/optimization/COptMethodTruncatedNewton.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLogItem.cpp.new copasi/optimization/COptLogItem.cpp + touch -r copasi/optimization/COptLogItem.cpp copasi/optimization/COptLogItem.cpp.new + mv copasi/optimization/COptLogItem.cpp.new copasi/optimization/COptLogItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptItem.cpp.new copasi/optimization/COptItem.cpp + touch -r copasi/optimization/COptItem.cpp copasi/optimization/COptItem.cpp.new + mv copasi/optimization/COptItem.cpp.new copasi/optimization/COptItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CRandomSearch.cpp.new copasi/optimization/CRandomSearch.cpp + touch -r copasi/optimization/CRandomSearch.cpp copasi/optimization/CRandomSearch.cpp.new + mv copasi/optimization/CRandomSearch.cpp.new copasi/optimization/CRandomSearch.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodStatistics.cpp.new copasi/optimization/COptMethodStatistics.cpp + touch -r copasi/optimization/COptMethodStatistics.cpp copasi/optimization/COptMethodStatistics.cpp.new + mv copasi/optimization/COptMethodStatistics.cpp.new copasi/optimization/COptMethodStatistics.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodLevenbergMarquardt.cpp.new copasi/optimization/COptMethodLevenbergMarquardt.cpp + touch -r copasi/optimization/COptMethodLevenbergMarquardt.cpp copasi/optimization/COptMethodLevenbergMarquardt.cpp.new + mv copasi/optimization/COptMethodLevenbergMarquardt.cpp.new copasi/optimization/COptMethodLevenbergMarquardt.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodGA.cpp.new copasi/optimization/COptMethodGA.cpp + touch -r copasi/optimization/COptMethodGA.cpp copasi/optimization/COptMethodGA.cpp.new + mv copasi/optimization/COptMethodGA.cpp.new copasi/optimization/COptMethodGA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptTask.cpp.new copasi/optimization/COptTask.cpp + touch -r copasi/optimization/COptTask.cpp copasi/optimization/COptTask.cpp.new + mv copasi/optimization/COptTask.cpp.new copasi/optimization/COptTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethod.cpp.new copasi/optimization/COptMethod.cpp + touch -r copasi/optimization/COptMethod.cpp copasi/optimization/COptMethod.cpp.new + mv copasi/optimization/COptMethod.cpp.new copasi/optimization/COptMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/FminBrent.cpp.new copasi/optimization/FminBrent.cpp + touch -r copasi/optimization/FminBrent.cpp copasi/optimization/FminBrent.cpp.new + mv copasi/optimization/FminBrent.cpp.new copasi/optimization/FminBrent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodCoranaWalk.cpp.new copasi/optimization/COptMethodCoranaWalk.cpp + touch -r copasi/optimization/COptMethodCoranaWalk.cpp copasi/optimization/COptMethodCoranaWalk.cpp.new + mv copasi/optimization/COptMethodCoranaWalk.cpp.new copasi/optimization/COptMethodCoranaWalk.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptPopulationMethod.cpp.new copasi/optimization/COptPopulationMethod.cpp + touch -r copasi/optimization/COptPopulationMethod.cpp copasi/optimization/COptPopulationMethod.cpp.new + mv copasi/optimization/COptPopulationMethod.cpp.new copasi/optimization/COptPopulationMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CTruncatedNewton.cpp.new copasi/optimization/CTruncatedNewton.cpp + touch -r copasi/optimization/CTruncatedNewton.cpp copasi/optimization/CTruncatedNewton.cpp.new + mv copasi/optimization/CTruncatedNewton.cpp.new copasi/optimization/CTruncatedNewton.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQRoundedRect.cpp.new copasi/qlayout/CQRoundedRect.cpp + touch -r copasi/qlayout/CQRoundedRect.cpp copasi/qlayout/CQRoundedRect.cpp.new + mv copasi/qlayout/CQRoundedRect.cpp.new copasi/qlayout/CQRoundedRect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQStyledGraphicsItem.cpp.new copasi/qlayout/CQStyledGraphicsItem.cpp + touch -r copasi/qlayout/CQStyledGraphicsItem.cpp copasi/qlayout/CQStyledGraphicsItem.cpp.new + mv copasi/qlayout/CQStyledGraphicsItem.cpp.new copasi/qlayout/CQStyledGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiGraphicsItem.cpp.new copasi/qlayout/CQCopasiGraphicsItem.cpp + touch -r copasi/qlayout/CQCopasiGraphicsItem.cpp copasi/qlayout/CQCopasiGraphicsItem.cpp.new + mv copasi/qlayout/CQCopasiGraphicsItem.cpp.new copasi/qlayout/CQCopasiGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLayoutView.cpp.new copasi/qlayout/CQLayoutView.cpp + touch -r copasi/qlayout/CQLayoutView.cpp copasi/qlayout/CQLayoutView.cpp.new + mv copasi/qlayout/CQLayoutView.cpp.new copasi/qlayout/CQLayoutView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQEffectDescription.cpp.new copasi/qlayout/CQEffectDescription.cpp + touch -r copasi/qlayout/CQEffectDescription.cpp copasi/qlayout/CQEffectDescription.cpp.new + mv copasi/qlayout/CQEffectDescription.cpp.new copasi/qlayout/CQEffectDescription.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationSettingsEditor.cpp.new copasi/qlayout/CQAnimationSettingsEditor.cpp + touch -r copasi/qlayout/CQAnimationSettingsEditor.cpp copasi/qlayout/CQAnimationSettingsEditor.cpp.new + mv copasi/qlayout/CQAnimationSettingsEditor.cpp.new copasi/qlayout/CQAnimationSettingsEditor.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLabelGraphicsItem.cpp.new copasi/qlayout/CQLabelGraphicsItem.cpp + touch -r copasi/qlayout/CQLabelGraphicsItem.cpp copasi/qlayout/CQLabelGraphicsItem.cpp.new + mv copasi/qlayout/CQLabelGraphicsItem.cpp.new copasi/qlayout/CQLabelGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQRenderConverter.cpp.new copasi/qlayout/CQRenderConverter.cpp + touch -r copasi/qlayout/CQRenderConverter.cpp copasi/qlayout/CQRenderConverter.cpp.new + mv copasi/qlayout/CQRenderConverter.cpp.new copasi/qlayout/CQRenderConverter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQConnectionGraphicsItem.cpp.new copasi/qlayout/CQConnectionGraphicsItem.cpp + touch -r copasi/qlayout/CQConnectionGraphicsItem.cpp copasi/qlayout/CQConnectionGraphicsItem.cpp.new + mv copasi/qlayout/CQConnectionGraphicsItem.cpp.new copasi/qlayout/CQConnectionGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationWindow.cpp.new copasi/qlayout/CQAnimationWindow.cpp + touch -r copasi/qlayout/CQAnimationWindow.cpp copasi/qlayout/CQAnimationWindow.cpp.new + mv copasi/qlayout/CQAnimationWindow.cpp.new copasi/qlayout/CQAnimationWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationControls.cpp.new copasi/qlayout/CQAnimationControls.cpp + touch -r copasi/qlayout/CQAnimationControls.cpp copasi/qlayout/CQAnimationControls.cpp.new + mv copasi/qlayout/CQAnimationControls.cpp.new copasi/qlayout/CQAnimationControls.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiEffect.cpp.new copasi/qlayout/CQCopasiEffect.cpp + touch -r copasi/qlayout/CQCopasiEffect.cpp copasi/qlayout/CQCopasiEffect.cpp.new + mv copasi/qlayout/CQCopasiEffect.cpp.new copasi/qlayout/CQCopasiEffect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiAnimation.cpp.new copasi/qlayout/CQCopasiAnimation.cpp + touch -r copasi/qlayout/CQCopasiAnimation.cpp copasi/qlayout/CQCopasiAnimation.cpp.new + mv copasi/qlayout/CQCopasiAnimation.cpp.new copasi/qlayout/CQCopasiAnimation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQEffectDescriptionEdit.cpp.new copasi/qlayout/CQEffectDescriptionEdit.cpp + touch -r copasi/qlayout/CQEffectDescriptionEdit.cpp copasi/qlayout/CQEffectDescriptionEdit.cpp.new + mv copasi/qlayout/CQEffectDescriptionEdit.cpp.new copasi/qlayout/CQEffectDescriptionEdit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLayoutScene.cpp.new copasi/qlayout/CQLayoutScene.cpp + touch -r copasi/qlayout/CQLayoutScene.cpp copasi/qlayout/CQLayoutScene.cpp.new + mv copasi/qlayout/CQLayoutScene.cpp.new copasi/qlayout/CQLayoutScene.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQZoomableView.cpp.new copasi/qlayout/CQZoomableView.cpp + touch -r copasi/qlayout/CQZoomableView.cpp copasi/qlayout/CQZoomableView.cpp.new + mv copasi/qlayout/CQZoomableView.cpp.new copasi/qlayout/CQZoomableView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalItem.cpp.new copasi/test2/CNormalItem.cpp + touch -r copasi/test2/CNormalItem.cpp copasi/test2/CNormalItem.cpp.new + mv copasi/test2/CNormalItem.cpp.new copasi/test2/CNormalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalProduct.cpp.new copasi/test2/CNormalProduct.cpp + touch -r copasi/test2/CNormalProduct.cpp copasi/test2/CNormalProduct.cpp.new + mv copasi/test2/CNormalProduct.cpp.new copasi/test2/CNormalProduct.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalSum.cpp.new copasi/test2/CNormalSum.cpp + touch -r copasi/test2/CNormalSum.cpp copasi/test2/CNormalSum.cpp.new + mv copasi/test2/CNormalSum.cpp.new copasi/test2/CNormalSum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalTranslation.cpp.new copasi/test2/CNormalTranslation.cpp + touch -r copasi/test2/CNormalTranslation.cpp copasi/test2/CNormalTranslation.cpp.new + mv copasi/test2/CNormalTranslation.cpp.new copasi/test2/CNormalTranslation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/test.cpp.new copasi/test2/test.cpp + touch -r copasi/test2/test.cpp copasi/test2/test.cpp.new + mv copasi/test2/test.cpp.new copasi/test2/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalLcm.cpp.new copasi/test2/CNormalLcm.cpp + touch -r copasi/test2/CNormalLcm.cpp copasi/test2/CNormalLcm.cpp.new + mv copasi/test2/CNormalLcm.cpp.new copasi/test2/CNormalLcm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalItemPower.cpp.new copasi/test2/CNormalItemPower.cpp + touch -r copasi/test2/CNormalItemPower.cpp copasi/test2/CNormalItemPower.cpp.new + mv copasi/test2/CNormalItemPower.cpp.new copasi/test2/CNormalItemPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalFraction.cpp.new copasi/test2/CNormalFraction.cpp + touch -r copasi/test2/CNormalFraction.cpp copasi/test2/CNormalFraction.cpp.new + mv copasi/test2/CNormalFraction.cpp.new copasi/test2/CNormalFraction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiSBW/SBWTranslator.cpp.new copasi/CopasiSBW/SBWTranslator.cpp + touch -r copasi/CopasiSBW/SBWTranslator.cpp copasi/CopasiSBW/SBWTranslator.cpp.new + mv copasi/CopasiSBW/SBWTranslator.cpp.new copasi/CopasiSBW/SBWTranslator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/SEDMLUtils.cpp.new copasi/sedml/SEDMLUtils.cpp + touch -r copasi/sedml/SEDMLUtils.cpp copasi/sedml/SEDMLUtils.cpp.new + mv copasi/sedml/SEDMLUtils.cpp.new copasi/sedml/SEDMLUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/SEDMLImporter.cpp.new copasi/sedml/SEDMLImporter.cpp + touch -r copasi/sedml/SEDMLImporter.cpp copasi/sedml/SEDMLImporter.cpp.new + mv copasi/sedml/SEDMLImporter.cpp.new copasi/sedml/SEDMLImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/CSEDMLExporter.cpp.new copasi/sedml/CSEDMLExporter.cpp + touch -r copasi/sedml/CSEDMLExporter.cpp copasi/sedml/CSEDMLExporter.cpp.new + mv copasi/sedml/CSEDMLExporter.cpp.new copasi/sedml/CSEDMLExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new copasi/elementaryFluxModes/CEFMAlgorithm.cpp + touch -r copasi/elementaryFluxModes/CEFMAlgorithm.cpp copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new + mv copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new copasi/elementaryFluxModes/CEFMAlgorithm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CStepMatrix.cpp.new copasi/elementaryFluxModes/CStepMatrix.cpp + touch -r copasi/elementaryFluxModes/CStepMatrix.cpp copasi/elementaryFluxModes/CStepMatrix.cpp.new + mv copasi/elementaryFluxModes/CStepMatrix.cpp.new copasi/elementaryFluxModes/CStepMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CTableauMatrix.cpp.new copasi/elementaryFluxModes/CTableauMatrix.cpp + touch -r copasi/elementaryFluxModes/CTableauMatrix.cpp copasi/elementaryFluxModes/CTableauMatrix.cpp.new + mv copasi/elementaryFluxModes/CTableauMatrix.cpp.new copasi/elementaryFluxModes/CTableauMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternMethod.cpp.new copasi/elementaryFluxModes/CBitPatternMethod.cpp + touch -r copasi/elementaryFluxModes/CBitPatternMethod.cpp copasi/elementaryFluxModes/CBitPatternMethod.cpp.new + mv copasi/elementaryFluxModes/CBitPatternMethod.cpp.new copasi/elementaryFluxModes/CBitPatternMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CTableauLine.cpp.new copasi/elementaryFluxModes/CTableauLine.cpp + touch -r copasi/elementaryFluxModes/CTableauLine.cpp copasi/elementaryFluxModes/CTableauLine.cpp.new + mv copasi/elementaryFluxModes/CTableauLine.cpp.new copasi/elementaryFluxModes/CTableauLine.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CSSAMethod.cpp.new copasi/elementaryFluxModes/CSSAMethod.cpp + touch -r copasi/elementaryFluxModes/CSSAMethod.cpp copasi/elementaryFluxModes/CSSAMethod.cpp.new + mv copasi/elementaryFluxModes/CSSAMethod.cpp.new copasi/elementaryFluxModes/CSSAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTree.cpp.new copasi/elementaryFluxModes/CBitPatternTree.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTree.cpp copasi/elementaryFluxModes/CBitPatternTree.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTree.cpp.new copasi/elementaryFluxModes/CBitPatternTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new copasi/elementaryFluxModes/CStepMatrixColumn.cpp + touch -r copasi/elementaryFluxModes/CStepMatrixColumn.cpp copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new + mv copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new copasi/elementaryFluxModes/CStepMatrixColumn.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CFluxScore.cpp.new copasi/elementaryFluxModes/CFluxScore.cpp + touch -r copasi/elementaryFluxModes/CFluxScore.cpp copasi/elementaryFluxModes/CFluxScore.cpp.new + mv copasi/elementaryFluxModes/CFluxScore.cpp.new copasi/elementaryFluxModes/CFluxScore.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CZeroSet.cpp.new copasi/elementaryFluxModes/CZeroSet.cpp + touch -r copasi/elementaryFluxModes/CZeroSet.cpp copasi/elementaryFluxModes/CZeroSet.cpp.new + mv copasi/elementaryFluxModes/CZeroSet.cpp.new copasi/elementaryFluxModes/CZeroSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMMethod.cpp.new copasi/elementaryFluxModes/CEFMMethod.cpp + touch -r copasi/elementaryFluxModes/CEFMMethod.cpp copasi/elementaryFluxModes/CEFMMethod.cpp.new + mv copasi/elementaryFluxModes/CEFMMethod.cpp.new copasi/elementaryFluxModes/CEFMMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new copasi/elementaryFluxModes/CBitPatternTreeNode.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTreeNode.cpp copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new copasi/elementaryFluxModes/CBitPatternTreeNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CFluxMode.cpp.new copasi/elementaryFluxModes/CFluxMode.cpp + touch -r copasi/elementaryFluxModes/CFluxMode.cpp copasi/elementaryFluxModes/CFluxMode.cpp.new + mv copasi/elementaryFluxModes/CFluxMode.cpp.new copasi/elementaryFluxModes/CFluxMode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMProblem.cpp.new copasi/elementaryFluxModes/CEFMProblem.cpp + touch -r copasi/elementaryFluxModes/CEFMProblem.cpp copasi/elementaryFluxModes/CEFMProblem.cpp.new + mv copasi/elementaryFluxModes/CEFMProblem.cpp.new copasi/elementaryFluxModes/CEFMProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMTask.cpp.new copasi/elementaryFluxModes/CEFMTask.cpp + touch -r copasi/elementaryFluxModes/CEFMTask.cpp copasi/elementaryFluxModes/CEFMTask.cpp.new + mv copasi/elementaryFluxModes/CEFMTask.cpp.new copasi/elementaryFluxModes/CEFMTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CLsodaMethod.cpp.new copasi/trajectory/CLsodaMethod.cpp + touch -r copasi/trajectory/CLsodaMethod.cpp copasi/trajectory/CLsodaMethod.cpp.new + mv copasi/trajectory/CLsodaMethod.cpp.new copasi/trajectory/CLsodaMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryTask.cpp.new copasi/trajectory/CTrajectoryTask.cpp + touch -r copasi/trajectory/CTrajectoryTask.cpp copasi/trajectory/CTrajectoryTask.cpp.new + mv copasi/trajectory/CTrajectoryTask.cpp.new copasi/trajectory/CTrajectoryTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridNextReactionRKMethod.cpp.new copasi/trajectory/CHybridNextReactionRKMethod.cpp + touch -r copasi/trajectory/CHybridNextReactionRKMethod.cpp copasi/trajectory/CHybridNextReactionRKMethod.cpp.new + mv copasi/trajectory/CHybridNextReactionRKMethod.cpp.new copasi/trajectory/CHybridNextReactionRKMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new copasi/trajectory/CHybridNextReactionLSODAMethod.cpp + touch -r copasi/trajectory/CHybridNextReactionLSODAMethod.cpp copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new + mv copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new copasi/trajectory/CHybridNextReactionLSODAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochNextReactionMethod.cpp.new copasi/trajectory/CStochNextReactionMethod.cpp + touch -r copasi/trajectory/CStochNextReactionMethod.cpp copasi/trajectory/CStochNextReactionMethod.cpp.new + mv copasi/trajectory/CStochNextReactionMethod.cpp.new copasi/trajectory/CStochNextReactionMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new copasi/trajectory/CStochasticRungeKuttaRI5.cpp + touch -r copasi/trajectory/CStochasticRungeKuttaRI5.cpp copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new + mv copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new copasi/trajectory/CStochasticRungeKuttaRI5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridMethodODE45.cpp.new copasi/trajectory/CHybridMethodODE45.cpp + touch -r copasi/trajectory/CHybridMethodODE45.cpp copasi/trajectory/CHybridMethodODE45.cpp.new + mv copasi/trajectory/CHybridMethodODE45.cpp.new copasi/trajectory/CHybridMethodODE45.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryProblem.cpp.new copasi/trajectory/CTrajectoryProblem.cpp + touch -r copasi/trajectory/CTrajectoryProblem.cpp copasi/trajectory/CTrajectoryProblem.cpp.new + mv copasi/trajectory/CTrajectoryProblem.cpp.new copasi/trajectory/CTrajectoryProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryMethod.cpp.new copasi/trajectory/CTrajectoryMethod.cpp + touch -r copasi/trajectory/CTrajectoryMethod.cpp copasi/trajectory/CTrajectoryMethod.cpp.new + mv copasi/trajectory/CTrajectoryMethod.cpp.new copasi/trajectory/CTrajectoryMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTauLeapMethod.cpp.new copasi/trajectory/CTauLeapMethod.cpp + touch -r copasi/trajectory/CTauLeapMethod.cpp copasi/trajectory/CTauLeapMethod.cpp.new + mv copasi/trajectory/CTauLeapMethod.cpp.new copasi/trajectory/CTauLeapMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRungeKutta.cpp.new copasi/trajectory/CRungeKutta.cpp + touch -r copasi/trajectory/CRungeKutta.cpp copasi/trajectory/CRungeKutta.cpp.new + mv copasi/trajectory/CRungeKutta.cpp.new copasi/trajectory/CRungeKutta.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochMethod.cpp.new copasi/trajectory/CStochMethod.cpp + touch -r copasi/trajectory/CStochMethod.cpp copasi/trajectory/CStochMethod.cpp.new + mv copasi/trajectory/CStochMethod.cpp.new copasi/trajectory/CStochMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRootFinder.cpp.new copasi/trajectory/CRootFinder.cpp + touch -r copasi/trajectory/CRootFinder.cpp copasi/trajectory/CRootFinder.cpp.new + mv copasi/trajectory/CRootFinder.cpp.new copasi/trajectory/CRootFinder.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp + touch -r copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new + mv copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CLsodaMethod2.cpp.new copasi/trajectory/CLsodaMethod2.cpp + touch -r copasi/trajectory/CLsodaMethod2.cpp copasi/trajectory/CLsodaMethod2.cpp.new + mv copasi/trajectory/CLsodaMethod2.cpp.new copasi/trajectory/CLsodaMethod2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajAdaptiveSA.cpp.new copasi/trajectory/CTrajAdaptiveSA.cpp + touch -r copasi/trajectory/CTrajAdaptiveSA.cpp copasi/trajectory/CTrajAdaptiveSA.cpp.new + mv copasi/trajectory/CTrajAdaptiveSA.cpp.new copasi/trajectory/CTrajAdaptiveSA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridMethod.cpp.new copasi/trajectory/CHybridMethod.cpp + touch -r copasi/trajectory/CHybridMethod.cpp copasi/trajectory/CHybridMethod.cpp.new + mv copasi/trajectory/CHybridMethod.cpp.new copasi/trajectory/CHybridMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTimeSeries.cpp.new copasi/trajectory/CTimeSeries.cpp + touch -r copasi/trajectory/CTimeSeries.cpp copasi/trajectory/CTimeSeries.cpp.new + mv copasi/trajectory/CTimeSeries.cpp.new copasi/trajectory/CTimeSeries.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochDirectMethod.cpp.new copasi/trajectory/CStochDirectMethod.cpp + touch -r copasi/trajectory/CStochDirectMethod.cpp copasi/trajectory/CStochDirectMethod.cpp.new + mv copasi/trajectory/CStochDirectMethod.cpp.new copasi/trajectory/CStochDirectMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/pvmtest/pvmtest.cpp.new copasi/pvmtest/pvmtest.cpp + touch -r copasi/pvmtest/pvmtest.cpp copasi/pvmtest/pvmtest.cpp.new + mv copasi/pvmtest/pvmtest.cpp.new copasi/pvmtest/pvmtest.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseML.cpp.new copasi/miase/CMiaseML.cpp + touch -r copasi/miase/CMiaseML.cpp copasi/miase/CMiaseML.cpp.new + mv copasi/miase/CMiaseML.cpp.new copasi/miase/CMiaseML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseTask.cpp.new copasi/miase/CMiaseTask.cpp + touch -r copasi/miase/CMiaseTask.cpp copasi/miase/CMiaseTask.cpp.new + mv copasi/miase/CMiaseTask.cpp.new copasi/miase/CMiaseTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseBase.cpp.new copasi/miase/CMiaseBase.cpp + touch -r copasi/miase/CMiaseBase.cpp copasi/miase/CMiaseBase.cpp.new + mv copasi/miase/CMiaseBase.cpp.new copasi/miase/CMiaseBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseParser.cpp.new copasi/miase/CMiaseParser.cpp + touch -r copasi/miase/CMiaseParser.cpp copasi/miase/CMiaseParser.cpp.new + mv copasi/miase/CMiaseParser.cpp.new copasi/miase/CMiaseParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseOutput.cpp.new copasi/miase/CMiaseOutput.cpp + touch -r copasi/miase/CMiaseOutput.cpp copasi/miase/CMiaseOutput.cpp.new + mv copasi/miase/CMiaseOutput.cpp.new copasi/miase/CMiaseOutput.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseModel.cpp.new copasi/miase/CMiaseModel.cpp + touch -r copasi/miase/CMiaseModel.cpp copasi/miase/CMiaseModel.cpp.new + mv copasi/miase/CMiaseModel.cpp.new copasi/miase/CMiaseModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseSimulation.cpp.new copasi/miase/CMiaseSimulation.cpp + touch -r copasi/miase/CMiaseSimulation.cpp copasi/miase/CMiaseSimulation.cpp.new + mv copasi/miase/CMiaseSimulation.cpp.new copasi/miase/CMiaseSimulation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CArrow.cpp.new copasi/layoutUI/CArrow.cpp + touch -r copasi/layoutUI/CArrow.cpp copasi/layoutUI/CArrow.cpp.new + mv copasi/layoutUI/CArrow.cpp.new copasi/layoutUI/CArrow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQLayoutMainWindow.cpp.new copasi/layoutUI/CQLayoutMainWindow.cpp + touch -r copasi/layoutUI/CQLayoutMainWindow.cpp copasi/layoutUI/CQLayoutMainWindow.cpp.new + mv copasi/layoutUI/CQLayoutMainWindow.cpp.new copasi/layoutUI/CQLayoutMainWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQFontRenderer.cpp.new copasi/layoutUI/CQFontRenderer.cpp + touch -r copasi/layoutUI/CQFontRenderer.cpp copasi/layoutUI/CQFontRenderer.cpp.new + mv copasi/layoutUI/CQFontRenderer.cpp.new copasi/layoutUI/CQFontRenderer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CCompartmentGraphNode.cpp.new copasi/layoutUI/CCompartmentGraphNode.cpp + touch -r copasi/layoutUI/CCompartmentGraphNode.cpp copasi/layoutUI/CCompartmentGraphNode.cpp.new + mv copasi/layoutUI/CCompartmentGraphNode.cpp.new copasi/layoutUI/CCompartmentGraphNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLNetworkPainter.cpp.new copasi/layoutUI/CQGLNetworkPainter.cpp + touch -r copasi/layoutUI/CQGLNetworkPainter.cpp copasi/layoutUI/CQGLNetworkPainter.cpp.new + mv copasi/layoutUI/CQGLNetworkPainter.cpp.new copasi/layoutUI/CQGLNetworkPainter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new copasi/layoutUI/CQSpringLayoutParameterWindow.cpp + touch -r copasi/layoutUI/CQSpringLayoutParameterWindow.cpp copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new + mv copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new copasi/layoutUI/CQSpringLayoutParameterWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CLabel.cpp.new copasi/layoutUI/CLabel.cpp + touch -r copasi/layoutUI/CLabel.cpp copasi/layoutUI/CLabel.cpp.new + mv copasi/layoutUI/CLabel.cpp.new copasi/layoutUI/CLabel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQQtImageTexturizer.cpp.new copasi/layoutUI/CQQtImageTexturizer.cpp + touch -r copasi/layoutUI/CQQtImageTexturizer.cpp copasi/layoutUI/CQQtImageTexturizer.cpp.new + mv copasi/layoutUI/CQQtImageTexturizer.cpp.new copasi/layoutUI/CQQtImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CDataEntity.cpp.new copasi/layoutUI/CDataEntity.cpp + touch -r copasi/layoutUI/CDataEntity.cpp copasi/layoutUI/CDataEntity.cpp.new + mv copasi/layoutUI/CDataEntity.cpp.new copasi/layoutUI/CDataEntity.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CSimSummaryInfo.cpp.new copasi/layoutUI/CSimSummaryInfo.cpp + touch -r copasi/layoutUI/CSimSummaryInfo.cpp copasi/layoutUI/CSimSummaryInfo.cpp.new + mv copasi/layoutUI/CSimSummaryInfo.cpp.new copasi/layoutUI/CSimSummaryInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQLayoutThread.cpp.new copasi/layoutUI/CQLayoutThread.cpp + touch -r copasi/layoutUI/CQLayoutThread.cpp copasi/layoutUI/CQLayoutThread.cpp.new + mv copasi/layoutUI/CQLayoutThread.cpp.new copasi/layoutUI/CQLayoutThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQCurrentValueTable.cpp.new copasi/layoutUI/CQCurrentValueTable.cpp + touch -r copasi/layoutUI/CQCurrentValueTable.cpp copasi/layoutUI/CQCurrentValueTable.cpp.new + mv copasi/layoutUI/CQCurrentValueTable.cpp.new copasi/layoutUI/CQCurrentValueTable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQNewMainWindow.cpp.new copasi/layoutUI/CQNewMainWindow.cpp + touch -r copasi/layoutUI/CQNewMainWindow.cpp copasi/layoutUI/CQNewMainWindow.cpp.new + mv copasi/layoutUI/CQNewMainWindow.cpp.new copasi/layoutUI/CQNewMainWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLLayoutPainter.cpp.new copasi/layoutUI/CQGLLayoutPainter.cpp + touch -r copasi/layoutUI/CQGLLayoutPainter.cpp copasi/layoutUI/CQGLLayoutPainter.cpp.new + mv copasi/layoutUI/CQGLLayoutPainter.cpp.new copasi/layoutUI/CQGLLayoutPainter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLLayoutViewer.cpp.new copasi/layoutUI/CQGLLayoutViewer.cpp + touch -r copasi/layoutUI/CQGLLayoutViewer.cpp copasi/layoutUI/CQGLLayoutViewer.cpp.new + mv copasi/layoutUI/CQGLLayoutViewer.cpp.new copasi/layoutUI/CQGLLayoutViewer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/NodeSizePanel.cpp.new copasi/layoutUI/NodeSizePanel.cpp + touch -r copasi/layoutUI/NodeSizePanel.cpp copasi/layoutUI/NodeSizePanel.cpp.new + mv copasi/layoutUI/NodeSizePanel.cpp.new copasi/layoutUI/NodeSizePanel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLViewport.cpp.new copasi/layoutUI/CQGLViewport.cpp + touch -r copasi/layoutUI/CQGLViewport.cpp copasi/layoutUI/CQGLViewport.cpp.new + mv copasi/layoutUI/CQGLViewport.cpp.new copasi/layoutUI/CQGLViewport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQPlayerControlWidget.cpp.new copasi/layoutUI/CQPlayerControlWidget.cpp + touch -r copasi/layoutUI/CQPlayerControlWidget.cpp copasi/layoutUI/CQPlayerControlWidget.cpp.new + mv copasi/layoutUI/CQPlayerControlWidget.cpp.new copasi/layoutUI/CQPlayerControlWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQAutolayoutWizard.cpp.new copasi/layoutUI/CQAutolayoutWizard.cpp + touch -r copasi/layoutUI/CQAutolayoutWizard.cpp copasi/layoutUI/CQAutolayoutWizard.cpp.new + mv copasi/layoutUI/CQAutolayoutWizard.cpp.new copasi/layoutUI/CQAutolayoutWizard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CGraphCurve.cpp.new copasi/layoutUI/CGraphCurve.cpp + touch -r copasi/layoutUI/CGraphCurve.cpp copasi/layoutUI/CGraphCurve.cpp.new + mv copasi/layoutUI/CGraphCurve.cpp.new copasi/layoutUI/CGraphCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/RGTextureSpec.cpp.new copasi/layoutUI/RGTextureSpec.cpp + touch -r copasi/layoutUI/RGTextureSpec.cpp copasi/layoutUI/RGTextureSpec.cpp.new + mv copasi/layoutUI/RGTextureSpec.cpp.new copasi/layoutUI/RGTextureSpec.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/BezierCurve.cpp.new copasi/layoutUI/BezierCurve.cpp + touch -r copasi/layoutUI/BezierCurve.cpp copasi/layoutUI/BezierCurve.cpp.new + mv copasi/layoutUI/BezierCurve.cpp.new copasi/layoutUI/BezierCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CGraphNode.cpp.new copasi/layoutUI/CGraphNode.cpp + touch -r copasi/layoutUI/CGraphNode.cpp copasi/layoutUI/CGraphNode.cpp.new + mv copasi/layoutUI/CGraphNode.cpp.new copasi/layoutUI/CGraphNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/FontChooser.cpp.new copasi/layoutUI/FontChooser.cpp + touch -r copasi/layoutUI/FontChooser.cpp copasi/layoutUI/FontChooser.cpp.new + mv copasi/layoutUI/FontChooser.cpp.new copasi/layoutUI/FontChooser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new copasi/layoutUI/CQScreenshotOptionsDialog.cpp + touch -r copasi/layoutUI/CQScreenshotOptionsDialog.cpp copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new + mv copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new copasi/layoutUI/CQScreenshotOptionsDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CVisParameters.cpp.new copasi/layoutUI/CVisParameters.cpp + touch -r copasi/layoutUI/CVisParameters.cpp copasi/layoutUI/CVisParameters.cpp.new + mv copasi/layoutUI/CVisParameters.cpp.new copasi/layoutUI/CVisParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/ParaPanel.cpp.new copasi/layoutUI/ParaPanel.cpp + touch -r copasi/layoutUI/ParaPanel.cpp copasi/layoutUI/ParaPanel.cpp.new + mv copasi/layoutUI/ParaPanel.cpp.new copasi/layoutUI/ParaPanel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapTask.cpp.new copasi/lyap/CLyapTask.cpp + touch -r copasi/lyap/CLyapTask.cpp copasi/lyap/CLyapTask.cpp.new + mv copasi/lyap/CLyapTask.cpp.new copasi/lyap/CLyapTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapMethod.cpp.new copasi/lyap/CLyapMethod.cpp + touch -r copasi/lyap/CLyapMethod.cpp copasi/lyap/CLyapMethod.cpp.new + mv copasi/lyap/CLyapMethod.cpp.new copasi/lyap/CLyapMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapWolfMethod.cpp.new copasi/lyap/CLyapWolfMethod.cpp + touch -r copasi/lyap/CLyapWolfMethod.cpp copasi/lyap/CLyapWolfMethod.cpp.new + mv copasi/lyap/CLyapWolfMethod.cpp.new copasi/lyap/CLyapWolfMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapProblem.cpp.new copasi/lyap/CLyapProblem.cpp + touch -r copasi/lyap/CLyapProblem.cpp copasi/lyap/CLyapProblem.cpp.new + mv copasi/lyap/CLyapProblem.cpp.new copasi/lyap/CLyapProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/wizard/wizard.cpp.new copasi/wizard/wizard.cpp + touch -r copasi/wizard/wizard.cpp copasi/wizard/wizard.cpp.new + mv copasi/wizard/wizard.cpp.new copasi/wizard/wizard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/output/COutputHandler.cpp.new copasi/output/COutputHandler.cpp + touch -r copasi/output/COutputHandler.cpp copasi/output/COutputHandler.cpp.new + mv copasi/output/COutputHandler.cpp.new copasi/output/COutputHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp + touch -r copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new + mv copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQCreatorDM.cpp.new copasi/MIRIAMUI/CQCreatorDM.cpp + touch -r copasi/MIRIAMUI/CQCreatorDM.cpp copasi/MIRIAMUI/CQCreatorDM.cpp.new + mv copasi/MIRIAMUI/CQCreatorDM.cpp.new copasi/MIRIAMUI/CQCreatorDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new copasi/MIRIAMUI/CQRDFTreeViewItem.cpp + touch -r copasi/MIRIAMUI/CQRDFTreeViewItem.cpp copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new + mv copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new copasi/MIRIAMUI/CQRDFTreeViewItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQMiriamWidget.cpp.new copasi/MIRIAMUI/CQMiriamWidget.cpp + touch -r copasi/MIRIAMUI/CQMiriamWidget.cpp copasi/MIRIAMUI/CQMiriamWidget.cpp.new + mv copasi/MIRIAMUI/CQMiriamWidget.cpp.new copasi/MIRIAMUI/CQMiriamWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQRDFTreeView.cpp.new copasi/MIRIAMUI/CQRDFTreeView.cpp + touch -r copasi/MIRIAMUI/CQRDFTreeView.cpp copasi/MIRIAMUI/CQRDFTreeView.cpp.new + mv copasi/MIRIAMUI/CQRDFTreeView.cpp.new copasi/MIRIAMUI/CQRDFTreeView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQModifiedDM.cpp.new copasi/MIRIAMUI/CQModifiedDM.cpp + touch -r copasi/MIRIAMUI/CQModifiedDM.cpp copasi/MIRIAMUI/CQModifiedDM.cpp.new + mv copasi/MIRIAMUI/CQModifiedDM.cpp.new copasi/MIRIAMUI/CQModifiedDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQReferenceDM.cpp.new copasi/MIRIAMUI/CQReferenceDM.cpp + touch -r copasi/MIRIAMUI/CQReferenceDM.cpp copasi/MIRIAMUI/CQReferenceDM.cpp.new + mv copasi/MIRIAMUI/CQReferenceDM.cpp.new copasi/MIRIAMUI/CQReferenceDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new copasi/compareExpressions/ConvertToCEvaluationNode.cpp + touch -r copasi/compareExpressions/ConvertToCEvaluationNode.cpp copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new + mv copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new copasi/compareExpressions/ConvertToCEvaluationNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalItem.cpp.new copasi/compareExpressions/CNormalItem.cpp + touch -r copasi/compareExpressions/CNormalItem.cpp copasi/compareExpressions/CNormalItem.cpp.new + mv copasi/compareExpressions/CNormalItem.cpp.new copasi/compareExpressions/CNormalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalProduct.cpp.new copasi/compareExpressions/CNormalProduct.cpp + touch -r copasi/compareExpressions/CNormalProduct.cpp copasi/compareExpressions/CNormalProduct.cpp.new + mv copasi/compareExpressions/CNormalProduct.cpp.new copasi/compareExpressions/CNormalProduct.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/stresstest/stress_test.cpp.new copasi/compareExpressions/stresstest/stress_test.cpp + touch -r copasi/compareExpressions/stresstest/stress_test.cpp copasi/compareExpressions/stresstest/stress_test.cpp.new + mv copasi/compareExpressions/stresstest/stress_test.cpp.new copasi/compareExpressions/stresstest/stress_test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalSum.cpp.new copasi/compareExpressions/CNormalSum.cpp + touch -r copasi/compareExpressions/CNormalSum.cpp copasi/compareExpressions/CNormalSum.cpp.new + mv copasi/compareExpressions/CNormalSum.cpp.new copasi/compareExpressions/CNormalSum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalChoiceLogical.cpp.new copasi/compareExpressions/CNormalChoiceLogical.cpp + touch -r copasi/compareExpressions/CNormalChoiceLogical.cpp copasi/compareExpressions/CNormalChoiceLogical.cpp.new + mv copasi/compareExpressions/CNormalChoiceLogical.cpp.new copasi/compareExpressions/CNormalChoiceLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalChoice.cpp.new copasi/compareExpressions/CNormalChoice.cpp + touch -r copasi/compareExpressions/CNormalChoice.cpp copasi/compareExpressions/CNormalChoice.cpp.new + mv copasi/compareExpressions/CNormalChoice.cpp.new copasi/compareExpressions/CNormalChoice.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalTranslation.cpp.new copasi/compareExpressions/CNormalTranslation.cpp + touch -r copasi/compareExpressions/CNormalTranslation.cpp copasi/compareExpressions/CNormalTranslation.cpp.new + mv copasi/compareExpressions/CNormalTranslation.cpp.new copasi/compareExpressions/CNormalTranslation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLogicalItem.cpp.new copasi/compareExpressions/CNormalLogicalItem.cpp + touch -r copasi/compareExpressions/CNormalLogicalItem.cpp copasi/compareExpressions/CNormalLogicalItem.cpp.new + mv copasi/compareExpressions/CNormalLogicalItem.cpp.new copasi/compareExpressions/CNormalLogicalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalBase.cpp.new copasi/compareExpressions/CNormalBase.cpp + touch -r copasi/compareExpressions/CNormalBase.cpp copasi/compareExpressions/CNormalBase.cpp.new + mv copasi/compareExpressions/CNormalBase.cpp.new copasi/compareExpressions/CNormalBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new copasi/compareExpressions/unittests/test_biomodels217_expression.cpp + touch -r copasi/compareExpressions/unittests/test_biomodels217_expression.cpp copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new + mv copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new copasi/compareExpressions/unittests/test_biomodels217_expression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new copasi/compareExpressions/unittests/test_depth_first_iterator.cpp + touch -r copasi/compareExpressions/unittests/test_depth_first_iterator.cpp copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new + mv copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new copasi/compareExpressions/unittests/test_depth_first_iterator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_node_conversion.cpp.new copasi/compareExpressions/unittests/test_node_conversion.cpp + touch -r copasi/compareExpressions/unittests/test_node_conversion.cpp copasi/compareExpressions/unittests/test_node_conversion.cpp.new + mv copasi/compareExpressions/unittests/test_node_conversion.cpp.new copasi/compareExpressions/unittests/test_node_conversion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_cnormallogical.cpp.new copasi/compareExpressions/unittests/test_cnormallogical.cpp + touch -r copasi/compareExpressions/unittests/test_cnormallogical.cpp copasi/compareExpressions/unittests/test_cnormallogical.cpp.new + mv copasi/compareExpressions/unittests/test_cnormallogical.cpp.new copasi/compareExpressions/unittests/test_cnormallogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_simplify.cpp.new copasi/compareExpressions/unittests/test_simplify.cpp + touch -r copasi/compareExpressions/unittests/test_simplify.cpp copasi/compareExpressions/unittests/test_simplify.cpp.new + mv copasi/compareExpressions/unittests/test_simplify.cpp.new copasi/compareExpressions/unittests/test_simplify.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test.cpp.new copasi/compareExpressions/unittests/test.cpp + touch -r copasi/compareExpressions/unittests/test.cpp copasi/compareExpressions/unittests/test.cpp.new + mv copasi/compareExpressions/unittests/test.cpp.new copasi/compareExpressions/unittests/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_compare_utilities.cpp.new copasi/compareExpressions/unittests/test_compare_utilities.cpp + touch -r copasi/compareExpressions/unittests/test_compare_utilities.cpp copasi/compareExpressions/unittests/test_compare_utilities.cpp.new + mv copasi/compareExpressions/unittests/test_compare_utilities.cpp.new copasi/compareExpressions/unittests/test_compare_utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_expression_comparison.cpp.new copasi/compareExpressions/unittests/test_expression_comparison.cpp + touch -r copasi/compareExpressions/unittests/test_expression_comparison.cpp copasi/compareExpressions/unittests/test_expression_comparison.cpp.new + mv copasi/compareExpressions/unittests/test_expression_comparison.cpp.new copasi/compareExpressions/unittests/test_expression_comparison.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_normalform.cpp.new copasi/compareExpressions/unittests/test_normalform.cpp + touch -r copasi/compareExpressions/unittests/test_normalform.cpp copasi/compareExpressions/unittests/test_normalform.cpp.new + mv copasi/compareExpressions/unittests/test_normalform.cpp.new copasi/compareExpressions/unittests/test_normalform.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLcm.cpp.new copasi/compareExpressions/CNormalLcm.cpp + touch -r copasi/compareExpressions/CNormalLcm.cpp copasi/compareExpressions/CNormalLcm.cpp.new + mv copasi/compareExpressions/CNormalLcm.cpp.new copasi/compareExpressions/CNormalLcm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalCall.cpp.new copasi/compareExpressions/CNormalCall.cpp + touch -r copasi/compareExpressions/CNormalCall.cpp copasi/compareExpressions/CNormalCall.cpp.new + mv copasi/compareExpressions/CNormalCall.cpp.new copasi/compareExpressions/CNormalCall.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalFunction.cpp.new copasi/compareExpressions/CNormalFunction.cpp + touch -r copasi/compareExpressions/CNormalFunction.cpp copasi/compareExpressions/CNormalFunction.cpp.new + mv copasi/compareExpressions/CNormalFunction.cpp.new copasi/compareExpressions/CNormalFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLogical.cpp.new copasi/compareExpressions/CNormalLogical.cpp + touch -r copasi/compareExpressions/CNormalLogical.cpp copasi/compareExpressions/CNormalLogical.cpp.new + mv copasi/compareExpressions/CNormalLogical.cpp.new copasi/compareExpressions/CNormalLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalItemPower.cpp.new copasi/compareExpressions/CNormalItemPower.cpp + touch -r copasi/compareExpressions/CNormalItemPower.cpp copasi/compareExpressions/CNormalItemPower.cpp.new + mv copasi/compareExpressions/CNormalItemPower.cpp.new copasi/compareExpressions/CNormalItemPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/compare_utilities.cpp.new copasi/compareExpressions/compare_utilities.cpp + touch -r copasi/compareExpressions/compare_utilities.cpp copasi/compareExpressions/compare_utilities.cpp.new + mv copasi/compareExpressions/compare_utilities.cpp.new copasi/compareExpressions/compare_utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new copasi/compareExpressions/CEvaluationNodeNormalizer.cpp + touch -r copasi/compareExpressions/CEvaluationNodeNormalizer.cpp copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new + mv copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new copasi/compareExpressions/CEvaluationNodeNormalizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalGeneralPower.cpp.new copasi/compareExpressions/CNormalGeneralPower.cpp + touch -r copasi/compareExpressions/CNormalGeneralPower.cpp copasi/compareExpressions/CNormalGeneralPower.cpp.new + mv copasi/compareExpressions/CNormalGeneralPower.cpp.new copasi/compareExpressions/CNormalGeneralPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalFraction.cpp.new copasi/compareExpressions/CNormalFraction.cpp + touch -r copasi/compareExpressions/CNormalFraction.cpp copasi/compareExpressions/CNormalFraction.cpp.new + mv copasi/compareExpressions/CNormalFraction.cpp.new copasi/compareExpressions/CNormalFraction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/CLocaleString.cpp.new copasi/commandline/CLocaleString.cpp + touch -r copasi/commandline/CLocaleString.cpp copasi/commandline/CLocaleString.cpp.new + mv copasi/commandline/CLocaleString.cpp.new copasi/commandline/CLocaleString.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/CConfigurationFile.cpp.new copasi/commandline/CConfigurationFile.cpp + touch -r copasi/commandline/CConfigurationFile.cpp copasi/commandline/CConfigurationFile.cpp.new + mv copasi/commandline/CConfigurationFile.cpp.new copasi/commandline/CConfigurationFile.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/COptions.cpp.new copasi/commandline/COptions.cpp + touch -r copasi/commandline/COptions.cpp copasi/commandline/COptions.cpp.new + mv copasi/commandline/COptions.cpp.new copasi/commandline/COptions.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/COptionParser.cpp.new copasi/commandline/COptionParser.cpp + touch -r copasi/commandline/COptionParser.cpp copasi/commandline/COptionParser.cpp.new + mv copasi/commandline/COptionParser.cpp.new copasi/commandline/COptionParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationTask.cpp.new copasi/oscillation/COscillationTask.cpp + touch -r copasi/oscillation/COscillationTask.cpp copasi/oscillation/COscillationTask.cpp.new + mv copasi/oscillation/COscillationTask.cpp.new copasi/oscillation/COscillationTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationMethod.cpp.new copasi/oscillation/COscillationMethod.cpp + touch -r copasi/oscillation/COscillationMethod.cpp copasi/oscillation/COscillationMethod.cpp.new + mv copasi/oscillation/COscillationMethod.cpp.new copasi/oscillation/COscillationMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationProblem.cpp.new copasi/oscillation/COscillationProblem.cpp + touch -r copasi/oscillation/COscillationProblem.cpp copasi/oscillation/COscillationProblem.cpp.new + mv copasi/oscillation/COscillationProblem.cpp.new copasi/oscillation/COscillationProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationMethodIntegrate.cpp.new copasi/oscillation/COscillationMethodIntegrate.cpp + touch -r copasi/oscillation/COscillationMethodIntegrate.cpp copasi/oscillation/COscillationMethodIntegrate.cpp.new + mv copasi/oscillation/COscillationMethodIntegrate.cpp.new copasi/oscillation/COscillationMethodIntegrate.cpp + echo 'Patch #0 (COPASI-fix_install_libpaths.patch):' Patch #0 (COPASI-fix_install_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeLists.txt patching file copasi/bindings/csharp/CMakeLists.txt Hunk #2 succeeded at 185 (offset 2 lines). patching file copasi/bindings/perl/CMakeLists.txt patching file copasi/bindings/python/CMakeLists.txt patching file copasi/bindings/java/CMakeLists.txt patching file copasi/bindings/octave/CMakeLists.txt + echo 'Patch #4 (COPASI-fix_exe_permissions.patch):' Patch #4 (COPASI-fix_exe_permissions.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file copasi/CopasiSE/CMakeLists.txt patching file copasi/CopasiUI/CMakeLists.txt + echo 'Patch #1 (COPASI-find_QWT5-QTMML-SBW.patch):' Patch #1 (COPASI-find_QWT5-QTMML-SBW.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeModules/FindQwtQt4.cmake patching file CMakeModules/FindQtMmlQt4.cmake patching file CMakeModules/FindSBW.cmake + echo 'Patch #6 (COPASI-bug2625.patch):' Patch #6 (COPASI-bug2625.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file CMakeLists.txt patching file ChooseQtVersion.cmake + echo 'Patch #7 (COPASI-qt5_fix.patch):' Patch #7 (COPASI-qt5_fix.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file copasi/UI/CScanContainerWidget.cpp patching file copasi/layoutUI/CQScreenshotOptionsDialog.cpp patching file copasi/wizard/wizard.cpp + sed -e 's|@@libdir@@|/usr/lib64|g' -i CMakeModules/FindQwtQt4.cmake + echo 'Patch #5 (COPASI-set_QWTPLOT3D_QT5.patch):' Patch #5 (COPASI-set_QWTPLOT3D_QT5.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeModules/FindQwtplot3dQt4.cmake + sed -e 's|@@qtplot3d_includedir@@|/usr/include/qt5/qwtplot3d-qt5|g' -i CMakeModules/FindQwtplot3dQt4.cmake + sed -e 's|@@qtplot3d_libdir@@|/usr/lib64|g' -i CMakeModules/FindQwtplot3dQt4.cmake + sed -e 's|@@_libmml_includedir@@|/usr/include/qt5/libmml-qt5|g' -i CMakeModules/FindQtMmlQt4.cmake + sed -e 's|@@_libmml_libdir@@|/usr/lib64|g' -i CMakeModules/FindQtMmlQt4.cmake + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nUvn3A + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + mkdir -p build + pushd build ~/build/BUILD/COPASI-Build-184/build ~/build/BUILD/COPASI-Build-184 + export 'CXXFLAGS=-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP' + CXXFLAGS='-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP' + export LIBBLAS=libopenblas.so + LIBBLAS=libopenblas.so + export INCBLAS=/usr/include/openblas + INCBLAS=/usr/include/openblas + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCOPASI_OVERRIDE_VERSION:STRING=4.23.184 -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython2.7.so -DENABLE_PERL:BOOL=ON -DENABLE_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DENABLE_CSHARP:BOOL=ON -DBUILD_CS_EXAMPLES:BOOL=OFF -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DSELECT_QT=Qt5 -DQT_QMAKE_EXECUTABLE:FILEPATH=/usr/bin/qmake-qt5 -DQWT_VERSION_STRING:STRING=6.1.3 -DQWT_LIBRARY:FILEPATH=/usr/lib64/libqwt-qt5.so -DQWT_INCLUDE_DIR:PATH=/usr/include/qt5/qwt -DBUILD_GUI:BOOL=ON -DBUILD_COPASISBW:BOOL=ON --DENABLE_MML:BOOL=ON -DENABLE_USE_SBMLUNIT=ON '-DCMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -pthread' '-DCMAKE_EXE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now' -DMML_INCLUDE_DIR:PATH=/usr/include/qt5/libmml-qt5 -DMML_LIBRARY:FILEPATH=/usr/lib64/libmml.so -DENABLE_SBW_INTEGRATION=ON -DBUILD_CXX_EXAMPLES=ON -DENABLE_COPASI_BANDED_GRAPH:BOOL=ON -DENABLE_COPASI_SEDML:BOOL=ON -DENABLE_COPASI_NONLIN_DYN_OSCILLATION:BOOL=ON -DENABLE_COPASI_EXTUNIT:BOOL=ON -DBLAS_blas_LIBRARY:FILEPATH=/usr/lib64/libopenblas.so -DLAPACK_lapack_LIBRARY:FILEPATH=/usr/lib64/ -DCLAPACK_INCLUDE_DIR:PATH=/usr/include/openblas -DENABLE_FLEX_BISON:BOOL=ON -DENABLE_COPASI_PARAMETERFITTING_RESIDUAL_SCALING:BOOL=ON -DENABLE_WITH_MERGEMODEL:BOOL=ON -DENABLE_USE_MATH_CONTAINER:BOOL=ON -DLIBSBML_INCLUDE_DIR:PATH=/usr/include/sbml -DLIBSBML_SHARED:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DF2C_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DENABLE_GPROF:BOOL=OFF -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DENABLE_FLEX_BISON:BOOL=ON -DBISON_EXECUTABLE:FILEPATH=/usr/bin/bison -DPREFER_STATIC:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCombine-static_DIR:PATH=/usr/lib64/cmake .. -- The C compiler identification is GNU 8.1.1 -- The CXX compiler identification is GNU 8.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- -- Found COMBINE: Combine-static -- Found FLEX: /usr/bin/flex (found version "2.6.1") -- Found BISON: /usr/bin/bison (found version "3.0.4") -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Looking for cheev_ WARNING: Target "cmTC_e4841" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. -- Looking for cheev_ - found -- Found CLAPACK: /usr/lib64;/usr/lib64/libopenblas.so -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- -lexpat -- Found Expat: /lib64/libexpat.so (found version "2.2.5") -- Found Raptor: /lib64/libraptor.so;-lm;-lcurl;-lxml2;-lz;-llzma;-lm;-ldl;-lxslt;-lxml2;-lm (found version "1.4.21") -- Looking for sbml -- Found LIBSBML: sbml -- Found LIBSEDML: /lib64/libsedml.so -- Found OpenGL: /usr/lib64/libOpenGL.so -- Using Qt5 -- Found QWT: /usr/lib64/libqwt-qt5.so -- Found QWTPLOT3D: /lib64/libqwtplot3d-qt5.so -- Found MML: /usr/lib64/libmml.so -- Found SBW: /lib64/libSBW.so -- Found SWIG: /usr/bin/swig (found version "3.0.12") -- Found C# Compiler: /usr/bin/mcs -- Found PythonInterp: /usr/bin/python2 (found version "2.7.15") -- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.15") -- Found Perl: /usr/bin/perl (found version "5.26.2") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.26.2") -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- ----------------------------------------------------------- Building COPASI 4.23.184 (Release) Source Dir = /builddir/build/BUILD/COPASI-Build-184 Binary Dir = /builddir/build/BUILD/COPASI-Build-184/build Install Prefix = /usr Dependencies: Vendor = Generic LAPACK Libs = /usr/lib64;/usr/lib64/libopenblas.so LAPACK LDFLAGS = Expat Libs = /lib64/libexpat.so Expat include = /usr/include Raptor Libs = /lib64/libraptor.so;-lm;-lcurl;-lxml2;-lz;-llzma;-lm;-ldl;-lxslt;-lxml2;-lm Raptor include = /usr/include libSBML lib = /usr/lib64/libsbml.so libSBML include = /usr/include/sbml Qt lib = Qt5::Concurrent;Qt5::Core;Qt5::Gui;Qt5::Widgets;Qt5::Network;Qt5::OpenGL;Qt5::PrintSupport;Qt5::Svg;Qt5::Xml Qt include = /usr/include/qt5/;/usr/include/qt5/QtConcurrent;/usr/include/qt5/QtCore;/usr/lib64/qt5/.//mkspecs/linux-g++;/usr/include/qt5/QtGui;/usr/include;/usr/include/qt5/QtWidgets;/usr/include/qt5/QtNetwork;/usr/include/qt5/QtOpenGL;/usr/include/qt5/QtPrintSupport;/usr/include/qt5/QtSvg;/usr/include/qt5/QtXml Qt version = 5.11.0 QWT lib = /usr/lib64/libqwt-qt5.so QWT include = /usr/include/qt5/qwt QWT version = 6.1.3 (0x60103) qwtplot3d lib = /lib64/libqwtplot3d-qt5.so qwtplot3d include = /usr/include/qt5/qwtplot3d-qt5 qtmml lib = /usr/lib64/libmml.so qtmml include = /usr/include/qt5/libmml-qt5 SBW lib = /lib64/libSBW.so SBW include = /usr/include libSEDML lib = /lib64/libsedml.so libSEDML include = /usr/include Options: COPASI_EXTUNIT = ON SBW integration = ON SBML Unit = ON Model Merging = ON SEDML support = ON Combine Archive support = ON SDE support = ON GPROF support = OFF UNDO framework = ON Versioning framework = OFF Provenance framework = OFF Analytics Task = OFF Additional Defines = COPASI_PARAMETERFITTING_RESIDUAL_SCALING;COPASI_BANDED_GRAPH;COPASI_NONLIN_DYN_OSCILLATION;COPASI_EXTUNIT;WITH_MERGEMODEL;WITH_PE_EVENT_CREATION;WITH_COMBINE_ARCHIVE;WITH_SDE_SUPPORT;HAVE_F2C_H;HAVE_CLAPACK_H;COPASI_SEDML;Linux;HAVE_MML;COPASI_SBW_INTEGRATION;LINUX;USE_SBMLUNIT;COPASI_SEDML;COPASI_UNDO Language Bindings: SWIG = /usr/bin/swig .NET Bindings = ON Java Bindings = OFF Python Bindings = ON Perl Bindings = ON Octave Bindings = OFF R Bindings = ON Building: COPASI SE = ON COPASI UI = ON C++ Examples = ON SBML TestRunner = OFF Franks TestRunner = OFF Semantic Testsuite = OFF Stochastic Testsuite = OFF Steady State TestRunner = OFF MCA TestRunner = OFF ----------------------------------------------------------- -- Configuring done WARNING: Target "libCOPASISE-static" requests linking to directory "/usr/lib64". 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CBiologicalDescription.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CConstants.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CMIRIAMResource.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp: In member function 'bool CDataModel::importSEDML(const string&, CProcessReport*, const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:1674:20: warning: unused variable 'trajTask' [-Wunused-variable] CTrajectoryTask *trajTask = NULL; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp: In member function 'bool CDataModel::exportSEDML(const string&, bool, int, int, bool, bool, CProcessReport*)': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:1879:16: warning: unused variable 'pOrigSEDMLDocument' [-Wunused-variable] SedDocument* pOrigSEDMLDocument = NULL; ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp: In member function 'void CDataModel::pushData()': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:2449:8: warning: variable 'condition' set but not used [-Wunused-but-set-variable] bool condition = true; ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:21: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CModified.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CModelMIRIAMInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFGraphConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFGraph.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFSubject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFTriplet.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFPredicate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 0%] Swig C# source cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/cmake -E remove_directory /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/csharp-files cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/cmake -E make_directory /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/csharp-files cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/swig -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/../swig/ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/../../ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp -I/builddir/build/BUILD/COPASI-Build-184 -c++ -csharp -namespace org.COPASI -DSWIG_CSHARP_NO_IMCLASS_STATIC_CONSTRUCTOR -DLIBSBML_CPP_NAMESPACE_USE -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSEDML_CPP_NAMESPACE_USE -DLIBSEDML_CPP_NAMESPACE_BEGIN -DLIBSEDML_CPP_NAMESPACE_END -dllimport copasics -DUSE_CLAPACK -outdir /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/csharp-files -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/csharp.i cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/../common/patch-wrapper.cmake -- Patching C++ wrapper make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFWriter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFWriter.cpp: In member function 'char* CRDFWriter::write(const CRDFGraph*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFWriter.cpp:90:8: warning: variable 'success' set but not used [-Wunused-but-set-variable] bool success = true; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getName(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:149:9: warning: the compiler can assume that the address of '_getNameReturn' will never be NULL [-Waddress] if (!&_getNameReturn) ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:149:9: warning: the compiler can assume that the address of '_getNameReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocation(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:224:9: warning: the compiler can assume that the address of '_getLocationReturn' will never be NULL [-Waddress] if (!&_getLocationReturn) ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:224:9: warning: the compiler can assume that the address of '_getLocationReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getURI(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:299:9: warning: the compiler can assume that the address of '_getURIReturn' will never be NULL [-Waddress] if (!&_getURIReturn) ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:299:9: warning: the compiler can assume that the address of '_getURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataResources(std::__cxx11::string, ns2__getDataResourcesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:372:9: warning: the compiler can assume that the address of '_param_1' will never be NULL [-Waddress] if (!&_param_1) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:372:9: warning: the compiler can assume that the address of '_param_1' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesInfo(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:444:9: warning: the compiler can assume that the address of 'getServicesInfoReturn' will never be NULL [-Waddress] if (!&getServicesInfoReturn) ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:444:9: warning: the compiler can assume that the address of 'getServicesInfoReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:517:9: warning: the compiler can assume that the address of 'getServicesVersionReturn' will never be NULL [-Waddress] if (!&getServicesVersionReturn) ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:517:9: warning: the compiler can assume that the address of 'getServicesVersionReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getJavaLibraryVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:590:9: warning: the compiler can assume that the address of 'getJavaLibraryVersionReturn' will never be NULL [-Waddress] if (!&getJavaLibraryVersionReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:590:9: warning: the compiler can assume that the address of 'getJavaLibraryVersionReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:664:9: warning: the compiler can assume that the address of '_getDataTypeURIReturn' will never be NULL [-Waddress] if (!&_getDataTypeURIReturn) ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:664:9: warning: the compiler can assume that the address of '_getDataTypeURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURIs(std::__cxx11::string, ns2__getDataTypeURIsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:737:9: warning: the compiler can assume that the address of '_param_2' will never be NULL [-Waddress] if (!&_param_2) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:737:9: warning: the compiler can assume that the address of '_param_2' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeDef(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:810:9: warning: the compiler can assume that the address of '_getDataTypeDefReturn' will never be NULL [-Waddress] if (!&_getDataTypeDefReturn) ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:810:9: warning: the compiler can assume that the address of '_getDataTypeDefReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:884:9: warning: the compiler can assume that the address of '_param_3' will never be NULL [-Waddress] if (!&_param_3) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:884:9: warning: the compiler can assume that the address of '_param_3' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations_(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse_&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:957:9: warning: the compiler can assume that the address of '_param_4' will never be NULL [-Waddress] if (!&_param_4) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:957:9: warning: the compiler can assume that the address of '_param_4' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::isDeprecated(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1030:9: warning: the compiler can assume that the address of '_isDeprecatedReturn' will never be NULL [-Waddress] if (!&_isDeprecatedReturn) ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1030:9: warning: the compiler can assume that the address of '_isDeprecatedReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getOfficialDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1104:9: warning: the compiler can assume that the address of '_getOfficialDataTypeURIReturn' will never be NULL [-Waddress] if (!&_getOfficialDataTypeURIReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1104:9: warning: the compiler can assume that the address of '_getOfficialDataTypeURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getMiriamURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1178:9: warning: the compiler can assume that the address of '_getMiriamURIReturn' will never be NULL [-Waddress] if (!&_getMiriamURIReturn) ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1178:9: warning: the compiler can assume that the address of '_getMiriamURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypePattern(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1252:9: warning: the compiler can assume that the address of '_getDataTypePatternReturn' will never be NULL [-Waddress] if (!&_getDataTypePatternReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1252:9: warning: the compiler can assume that the address of '_getDataTypePatternReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInfo(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1326:9: warning: the compiler can assume that the address of '_getResourceInfoReturn' will never be NULL [-Waddress] if (!&_getResourceInfoReturn) ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1326:9: warning: the compiler can assume that the address of '_getResourceInfoReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInstitution(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1400:9: warning: the compiler can assume that the address of '_getResourceInstitutionReturn' will never be NULL [-Waddress] if (!&_getResourceInstitutionReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1400:9: warning: the compiler can assume that the address of '_getResourceInstitutionReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceLocation(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1474:9: warning: the compiler can assume that the address of '_getResourceLocationReturn' will never be NULL [-Waddress] if (!&_getResourceLocationReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1474:9: warning: the compiler can assume that the address of '_getResourceLocationReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeSynonyms(std::__cxx11::string, ns2__getDataTypeSynonymsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1547:9: warning: the compiler can assume that the address of '_param_5' will never be NULL [-Waddress] if (!&_param_5) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1547:9: warning: the compiler can assume that the address of '_param_5' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getNames(std::__cxx11::string, ns2__getNamesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1619:9: warning: the compiler can assume that the address of '_param_6' will never be NULL [-Waddress] if (!&_param_6) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1619:9: warning: the compiler can assume that the address of '_param_6' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesName(ns2__getDataTypesNameResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1690:9: warning: the compiler can assume that the address of '_param_7' will never be NULL [-Waddress] if (!&_param_7) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServimake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' cesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1690:9: warning: the compiler can assume that the address of '_param_7' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesId(ns2__getDataTypesIdResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1761:9: warning: the compiler can assume that the address of '_param_8' will never be NULL [-Waddress] if (!&_param_8) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1761:9: warning: the compiler can assume that the address of '_param_8' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::checkRegExp(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1835:9: warning: the compiler can assume that the address of '_checkRegExpReturn' will never be NULL [-Waddress] if (!&_checkRegExpReturn) ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1835:9: warning: the compiler can assume that the address of '_checkRegExpReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesName(ns2__getDataTypesNameResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1690:3: warning: nonnull argument '_param_7' compared to NULL [-Wnonnull-compare] if (!&_param_7) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesId(ns2__getDataTypesIdResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1761:3: warning: nonnull argument '_param_8' compared to NULL [-Wnonnull-compare] if (!&_param_8) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getName(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:149:3: warning: nonnull argument '_getNameReturn' compared to NULL [-Wnonnull-compare] if (!&_getNameReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocation(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:224:3: warning: nonnull argument '_getLocationReturn' compared to NULL [-Wnonnull-compare] if (!&_getLocationReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getURI(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:299:3: warning: nonnull argument '_getURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataResources(std::__cxx11::string, ns2__getDataResourcesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:372:3: warning: nonnull argument '_param_1' compared to NULL [-Wnonnull-compare] if (!&_param_1) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesInfo(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:444:3: warning: nonnull argument 'getServicesInfoReturn' compared to NULL [-Wnonnull-compare] if (!&getServicesInfoReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:517:3: warning: nonnull argument 'getServicesVersionReturn' compared to NULL [-Wnonnull-compare] if (!&getServicesVersionReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getJavaLibraryVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:590:3: warning: nonnull argument 'getJavaLibraryVersionReturn' compared to NULL [-Wnonnull-compare] if (!&getJavaLibraryVersionReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:664:3: warning: nonnull argument '_getDataTypeURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getDataTypeURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURIs(std::__cxx11::string, ns2__getDataTypeURIsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:737:3: warning: nonnull argument '_param_2' compared to NULL [-Wnonnull-compare] if (!&_param_2) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeDef(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:810:3: warning: nonnull argument '_getDataTypeDefReturn' compared to NULL [-Wnonnull-compare] if (!&_getDataTypeDefReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:884:3: warning: nonnull argument '_param_3' compared to NULL [-Wnonnull-compare] if (!&_param_3) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations_(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse_&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:957:3: warning: nonnull argument '_param_4' compared to NULL [-Wnonnull-compare] if (!&_param_4) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::isDeprecated(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1030:3: warning: nonnull argument '_isDeprecatedReturn' compared to NULL [-Wnonnull-compare] if (!&_isDeprecatedReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getOfficialDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1104:3: warning: nonnull argument '_getOfficialDataTypeURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getOfficialDataTypeURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getMiriamURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1178:3: warning: nonnull argument '_getMiriamURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getMiriamURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypePattern(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1252:3: warning: nonnull argument '_getDataTypePatternReturn' compared to NULL [-Wnonnull-compare] if (!&_getDataTypePatternReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInfo(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1326:3: warning: nonnull argument '_getResourceInfoReturn' compared to NULL [-Wnonnull-compare] if (!&_getResourceInfoReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInstitution(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1400:3: warning: nonnull argument '_getResourceInstitutionReturn' compared to NULL [-Wnonnull-compare] if (!&_getResourceInstitutionReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceLocation(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1474:3: warning: nonnull argument '_getResourceLocationReturn' compared to NULL [-Wnonnull-compare] if (!&_getResourceLocationReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeSynonyms(std::__cxx11::string, ns2__getDataTypeSynonymsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1547:3: warning: nonnull argument '_param_5' compared to NULL [-Wnonnull-compare] if (!&_param_5) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getNames(std::__cxx11::string, ns2__getNamesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1619:3: warning: nonnull argument '_param_6' compared to NULL [-Wnonnull-compare] if (!&_param_6) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::checkRegExp(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1835:3: warning: nonnull argument '_checkRegExpReturn' compared to NULL [-Wnonnull-compare] if (!&_checkRegExpReturn) ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapC.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapC.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp: In function 'ArrayOf_USCORExsd_USCOREstring* soap_in_ArrayOf_USCORExsd_USCOREstring(soap*, const char*, ArrayOf_USCORExsd_USCOREstring*, const char*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp:2260:48: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'std::__cxx11::string' {aka 'class std::__cxx11::basic_string'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(p, &q, sizeof(std::string)); ^ In file included from /usr/include/c++/8/string:52, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:511, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapStub.h:41, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapH.h:23, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp:23: /usr/include/c++/8/bits/basic_string.h:77:11: note: 'std::__cxx11::string' {aka 'class std::__cxx11::basic_string'} declared here class basic_string ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CArray.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CCommonName.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 1%] Build csharp files cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/cmake -DCSHARP_EXTRA_ARGS="" -DCSHARP_COMPILER="/usr/bin/mcs" -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/compile-native-files.cmake -- Patched CTaskEnum.cs -- Patched CModelEntity.cs -- Patched CDataArray.cs -- Patched CCore.cs Compilation succeeded - 3 warning(s) make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' Creating: copasicsP.dll csharp-files/CEvent.cs(47,23): warning CS0414: The private field `org.COPASI.CEvent.expressionReference' is assigned but its value is never used csharp-files/CEventAssignment.cs(47,23): warning CS0414: The private field `org.COPASI.CEventAssignment.expressionReference' is assigned but its value is never used csharp-files/CModelEntity.cs(47,23): warning CS0414: The private field `org.COPASI.CModelEntity.expressionReference' is assigned but its value is never used make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Built target binding_csharp_managed_lib make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/stdsoap2.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/stdsoap2.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'int fsend(soap*, const char*, size_t)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:592:63: warning: passing argument 3 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, NULL, &fd, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:737:61: warning: passing argument 3 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, NULL, &fd, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'size_t frecv(soap*, char*, size_t)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:1075:55: warning: passing argument 2 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, &fd, NULL, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:1196:49: warning: passing argument 2 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, &fd, NULL, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'int soap_accept(soap*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:5865:55: warning: passing argument 2 to restrict-qualified parameter aliases with arguments 3, 4 [-Wrestrict] r = select((int)soap->master + 1, &fd, &fd, &fd, &timeout); ^~~ ~~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'const char* soap_set_validation_fault(soap*, const char*, const char*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:18802:29: warning: '%s' directive writing up to 1023 bytes into a region of size 978 [-Wformat-overflow=] sprintf(soap->msgbuf, "Validation constraint violation: %s%s in element <%s>", s, t ? t : SOAP_STR_EOS, soap->tag); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:861, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:503, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 48 or more bytes (assuming 1071) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'void soap_set_fault(soap*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:18891:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] sprintf(soap->msgbuf, "Method '%s' not implemented: method name or namespace not recognized", soap->tag); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:861, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:503, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 67 and 1090 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:18864:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1003 [-Wformat-overflow=] sprintf(soap->msgbuf, "The data in element '%s' must be understood but cannot be handled", soap->tag); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:861, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:503, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 64 and 1087 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:504, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: In function 'char* strcat(char*, const char*)', inlined from 'int http_parse(soap*)' at /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:17148:19: /usr/include/bits/string_fortified.h:128:33: warning: 'char* __builtin___strcat_chk(char*, const char*, long unsigned int)' accessing 1025 or more bytes at offsets 99744 and 100768 may overlap 1 byte at offset 100768 [-Wrestrict] return __builtin___strcat_chk (__dest, __src, __bos (__dest)); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArrayElementReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataArrayElementReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataArrayElementReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataArray.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataString.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataContainer.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataContainer.cpp: In member function 'void CDataContainer::CObjectMap::objectRenamed(CDataObject*, const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataContainer.cpp:309:16: warning: unused variable 'success' [-Wunused-variable] bool success = (itMap->second.erase(pObject) > 0); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataTimer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:14: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h: In constructor 'CDataObject::CDataObject()': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:269:13: warning: 'CDataObject::mPrerequisits' will be initialized after [-Wreorder] ObjectSet mPrerequisits; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:265:33: warning: 'std::set CDataObject::mReferencedValidities' [-Wreorder] std::set< const CValidity * > mReferencedValidities; ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:26:1: warning: when initialized here [-Wreorder] CDataObject::CDataObject(): ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:14: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h: In constructor 'CDataObject::CDataObject(const string&, const CDataContainer*, const string&, const CFlags&)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:269:13: warning: 'CDataObject::mPrerequisits' will be initialized after [-Wreorder] ObjectSet mPrerequisits; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:265:33: warning: 'std::set CDataObject::mReferencedValidities' [-Wreorder] std::set< const CValidity * > mReferencedValidities; ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:40:1: warning: when initialized here [-Wreorder] CDataObject::CDataObject(const std::string & name, ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:14: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h: In constructor 'CDataObject::CDataObject(const CDataObject&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:269:13: warning: 'CDataObject::mPrerequisits' will be initialized after [-Wreorder] ObjectSet mPrerequisits; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:265:33: warning: 'std::set CDataObject::mReferencedValidities' [-Wreorder] std::set< const CValidity * > mReferencedValidities; ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:76:1: warning: when initialized here [-Wreorder] CDataObject::CDataObject(const CDataObject & src, ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CObjectInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRegisteredCommonName.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CLocaleString.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 0%] Swig R source cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/swig -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../swig/ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../../ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R -I/builddir/build/BUILD/COPASI-Build-184 -c++ -r -DLIBSBML_CPP_NAMESPACE_USE -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSEDML_CPP_NAMESPACE_USE -DLIBSEDML_CPP_NAMESPACE_BEGIN -DLIBSEDML_CPP_NAMESPACE_END -DUSE_CLAPACK -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/R.i cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -DSRC_DIR=/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R -DFILENAME="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.R" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/patch-swig-file.cmake -- Patched COPASI.R cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../common/patch-wrapper.cmake -- Patching C++ wrapper make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptionParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.h: In constructor 'CRootContainer::CRootContainer(const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.h:75:23: warning: 'CRootContainer::mpUnitDefinitionList' will be initialized after [-Wreorder] CUnitDefinitionDB * mpUnitDefinitionList; ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.h:73:23: warning: 'CConfigurationFile* CRootContainer::mpConfiguration' [-Wreorder] CConfigurationFile* mpConfiguration; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.cpp:38:1: warning: when initialized here [-Wreorder] CRootContainer::CRootContainer(const bool & withGUI): ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:22: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h: In constructor 'CConfigurationFile::CConfigurationFile(const string&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:478:10: warning: 'CConfigurationFile::mpValidateUnits' will be initialized after [-Wreorder] bool * mpValidateUnits; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:467:27: warning: 'CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity' [-Wreorder] CCopasiParameterGroup * mpDisplayIssueSeverity; ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:109:1: warning: when initialized here [-Wreorder] CConfigurationFile::CConfigurationFile(const std::string & name, ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:22: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h: In constructor 'CConfigurationFile::CConfigurationFile(const CConfigurationFile&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:478:10: warning: 'CConfigurationFile::mpValidateUnits' will be initialized after [-Wreorder] bool * mpValidateUnits; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:467:27: warning: 'CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity' [-Wreorder] CCopasiParameterGroup * mpDisplayIssueSeverity; ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:139:1: warning: when initialized here [-Wreorder] CConfigurationFile::CConfigurationFile(const CConfigurationFile & src, ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:23: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalCall.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalChoice.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.cpp:50: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalChoiceLogical.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: 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copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalFraction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalGeneralPower.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas 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CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalItemPower.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. 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/builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework 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Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalProduct.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalProduct.cpp: In copy constructor 'CNormalProduct::CNormalProduct(const CNormalProduct&)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalProduct.cpp:68:12: warning: unused variable 'result' [-Wunused-variable] bool result = this->mItemPowers.insert(pDestItemPower).second; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp: In copy constructor 'CNormalSum::CNormalSum(const CNormalSum&)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp:91:12: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = mProducts.insert(new CNormalProduct(*pTmpProduct)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp:100:12: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = mFractions.insert(new CNormalFraction(**it2)).second; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:29: /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySetOfSets(const CNormalLogical::TemplateSetOfSets&, CNormalLogical::TemplateSetOfSets&) [with TYPE = CNormalChoiceLogical]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:39:45: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = target.insert(std::make_pair(tmpSet, it->second)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySetOfSets(const CNormalLogical::TemplateSetOfSets&, CNormalLogical::TemplateSetOfSets&) [with TYPE = CNormalLogicalItem]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:41:45: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable 'tmpRes' [-Wunused-variable] /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalChoiceLogical]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:216:38: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalLogicalItem]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:494:43: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:54: /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalChoiceLogical]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2632:64: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalLogicalItem]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2642:65: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionProblem.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionProblem.cpp: In function 'std::ostream& operator<<(std::ostream&, const CCrossSectionProblem&)': /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionProblem.cpp:90:21: warning: unused variable 'pDataModel' [-Wunused-variable] const CDataModel* pDataModel = o.getObjectDataModel(); ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/compare_utilities.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/compare_utilities.cpp: In function 'bool contains_necessary_mass_action_elements(const CDataVector&, const CNormalProduct*, const CModel*)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/compare_utilities.cpp:1226:25: warning: unused variable 'pDatamodel' [-Wunused-variable] const CDataModel* pDatamodel = dynamic_cast(pModel->getObjectParent()); ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp: In static member function 'static CNormalFraction* CNormalTranslation::normAndSimplifyReptdly(const CEvaluationNode*, unsigned int)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp:170:20: warning: unused variable 'pFraction' [-Wunused-variable] CNormalFraction* pFraction = dynamic_cast(base0); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp: In static member function 'static CEvaluationNode* CNormalTranslation::newCancel(const CEvaluationNode*)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp:4071:34: warning: unused variable 'pChild2' [-Wunused-variable] const CEvaluationNode* pChild2 = dynamic_cast(pChild1->getSibling()); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o cd 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationParser_yacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CDerive.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CDerive.cpp: In static member function 'static CEvaluationNode* CDerive::deriveBranch(const CEvaluationNode*, const CDataObject*, std::vector&, const CEvaluationTree*, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CDerive.cpp:495:25: warning: unused variable 'tmpFunction' [-Wunused-variable] const CFunction * tmpFunction = dynamic_cast(pENCall->getCalledTree()); ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationLexer_lex.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp: In member function 'virtual ASTNode* CEvaluationNodeConstant::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeChoice.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeCall.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeDelay.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNode.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNode.cpp: In member function 'bool CEvaluationNode::operator<(const CEvaluationNode&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNode.cpp:841:10: warning: enumeration value 'UNIT' not handled in switch [-Wswitch] switch (mainType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In constructor 'CEvaluationNodeLogical::CEvaluationNodeLogical(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In member function 'virtual CIssue CEvaluationNodeLogical::compile(const CEvaluationTree*)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SIN' not handled in switch [-Wsmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' witch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In member function 'virtual CValidatedUnit CEvaluationNodeLogical::getUnit(const CMathContainer&, const std::vector&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In member function 'virtual CValidatedUnit CEvaluationNodeLogical::setUnit(const CMathContainer&, const std::map&, std::map&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In static member function 'static CEvaluationNode* CEvaluationNodeLogical::fromAST(const ASTNode*, const std::vector&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp: In constructor 'CEvaluationNodeNumber::CEvaluationNodeNumber(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp: In member function 'virtual ASTNode* CEvaluationNodeNumber::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp: In member function 'virtual ASTNode* CEvaluationNodeFunction::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp: In member function 'virtual std::__cxx11::string CEvaluationNodeFunction::getMMLString(const std::vector >&, bool, const std::vector > >&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In constructor 'CEvaluationNodeObject::CEvaluationNodeObject(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'virtual CIssue CEvaluationNodeObject::compile(const CEvaluationTree*)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'virtual const Data& CEvaluationNodeObject::getData() const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'virtual std::__cxx11::string CEvaluationNodeObject::getInfix(const std::vector >&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'void CEvaluationNodeObject::setObjectValuePtr(double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp: In constructor 'CEvaluationNodeStructure::CEvaluationNodeStructure(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeWhiteSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeVariable.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CExpression.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CExpression.cpp: In member function 'void CExpression::initObjects()': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CExpression.cpp:56:22: warning: unused variable 'pObject' [-Wunused-variable] CObjectInterface * pObject = ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp: In member function 'virtual ASTNode* CEvaluationNodeOperator::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp: In member function 'virtual std::__cxx11::string CEvaluationNodeOperator::getMMLString(const std::vector >&, bool, const std::vector > >&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' asi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp: In member function 'bool CEvaluationTree::setTree(const ASTNode&, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:627:24: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (TargetType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:611:20: warning: unused variable 'pErrorNode' [-Wunused-variable] CEvaluationNode *pErrorNode = NULL; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp: In static member function 'static CEvaluationNode* CEvaluationTree::fromAST(const ASTNode*, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_QUALIFIER_BVAR' not handled in switch [-Wswitch] switch (itNode->getType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_QUALIFIER_LOGBASE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_QUALIFIER_DEGREE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_SEMANTICS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_CONSTRUCTOR_PIECE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_CONSTRUCTOR_OTHERWISE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_QUOTIENT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_RATE_OF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_REM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_LOGICAL_IMPLIES' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_CSYMBOL_FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_ORIGINATES_IN_PACKAGE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionAnalyzer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLDefaultStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLEllipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLImageTexturizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLImage.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGroup.cpp: In member function 'RenderGroup* CLGroup::toSBML(unsigned int, unsigned int) const': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGroup.cpp:884:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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'/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalRenderInformation.cpp: In member function 'LocalRenderInformation* CLLocalRenderInformation::toSBML(unsigned int, unsigned int) const': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalRenderInformation.cpp:159:11: warning: unused variable 'result' [-Wunused-variable] int result = pLRI->addStyle(pStyle); ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLPolygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderFlattener.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderInformationBase.cpp: In member function 'void CLRenderInformationBase::addSBMLAttributes(RenderInformationBase*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderInformationBase.cpp:423:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLText.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLayoutRenderer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLUnresolvedReferenceException.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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/builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLayoutEngine.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLayoutState.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/utility_classes.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/layout/SBMLDocumentLoader.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layout/SBMLDocumentLoader.cpp: In static member function 'static CLayout* SBMLDocumentLoader::createLayout(const Layout&, const std::map, std::__cxx11::basic_string >&, std::map, std::__cxx11::basic_string >&, const std::map, std::__cxx11::basic_string >&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/SBMLDocumentLoader.cpp:267:10: warning: unused variable 'count' [-Wunused-variable] size_t count = idToKeyMap.size() + globalIdToKeyMap.size(); ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CListOfLayouts.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAMethod.cpp: In member function 'int CLNAMethod::calculateCovarianceMatrixReduced()': /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAMethod.cpp:298:21: warning: unused variable 'pJacobian' [-Wunused-variable] const C_FLOAT64 * pJacobian = mJacobianReduced.array(); ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lyap/CLyapProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyNodeIterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEnum.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp: In member function 'std::__cxx11::string CMathDependencyGraph::getDOTNodeId(const CObjectInterface*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'Noise' not handled in switch [-Wswitch] switch (pMathObject->getValueType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'ParticleNoise' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'DelayValue' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'DelayLag' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'TransitionTime' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:15: /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h: In copy constructor 'CMathEventQueue::CAction::CAction(const CMathEventQueue::CAction&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:187:23: warning: 'CMathEventQueue::CAction::mpPriority' will be initialized after [-Wreorder] const C_FLOAT64 * mpPriority; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:182:26: warning: 'CVector CMathEventQueue::CAction::mValues' [-Wreorder] CVector< C_FLOAT64 > mValues; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:71:1: warning: when initialized here [-Wreorder] CMathEventQueue::CAction::CAction(const CAction & src): ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp: In constructor 'CMathEventQueue::CAction::CAction(CMathEvent*, CMathEventQueue*)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:89:10: warning: enumeration value 'Stop' not handled in switch [-Wswitch] switch (pEvent->getType()) ^ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:15: /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h: In constructor 'CMathEventQueue::CAction::CAction(const CVector&, CMathEvent*, CMathEventQueue*)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:187:23: warning: 'CMathEventQueue::CAction::mpPriority' will be initialized after [-Wreorder] const C_FLOAT64 * mpPriority; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:182:26: warning: 'CVector CMathEventQueue::CAction::mValues' [-Wreorder] CVector< C_FLOAT64 > mValues; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:102:1: warning: when initialized here [-Wreorder] CMathEventQueue::CAction::CAction(const CVector< C_FLOAT64 > & values, ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp: In member function 'virtual CIssue CMathExpression::compile()': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch ((*it)->subType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp: In static member function 'static CEvaluationNode* CMathEvent::CTrigger::compileLE(const CEvaluationNode*, const std::vector&, const CMath::Variables&, CMathEvent::CTrigger::CRootProcessor*&, CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (pTriggerNode->subType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathUpdateSequence.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqParser_yacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqParser_lex.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:13: /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.h: In copy constructor 'CMathContainer::CMathContainer(const CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.h:1104:37: warning: 'CMathContainer::mRandom' will be initialized after [-Wreorder] CDataObjectReference< C_FLOAT64 > mRandom; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.h:1103:23: warning: 'const CDataObject* CMathContainer::mpQuantity2NumberFactor' [-Wreorder] const CDataObject * mpQuantity2NumberFactor; ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:411:1: warning: when initialized here [-Wreorder] CMathContainer::CMathContainer(const CMathContainer & src): ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp: In member function 'void CMathContainer::createSynchronizeInitialValuesSequence()': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:2370:20: warning: enumeration value 'Undefined' not handled in switch [-Wswitch] switch (pObject->getSimulationType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp: In member function 'void CMathContainer::createApplyInitialValuesSequence()': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:2502:20: warning: enumeration value 'Undefined' not handled in switch [-Wswitch] switch (pObject->getSimulationType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::compile(CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:603:10: warning: enumeration value 'DelayValue' not handled in switch [-Wswitch] switch (mValueType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:603:10: warning: enumeration value 'DelayLag' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::compileInitialValue(CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:709:28: warning: unused variable 'pComparment' [-Wunused-variable] const CCompartment * pComparment = pSpecies->getCompartment(); ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::createIntensiveValueExpression(const CMetab*, CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1686:22: warning: unused variable 'pNumber' [-Wunused-variable] CObjectInterface * pNumber = NULL; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1687:22: warning: unused variable 'pCompartment' [-Wunused-variable] CObjectInterface * pCompartment = NULL; ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::createExtensiveValueExpression(const CMetab*, CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1721:22: warning: variable 'pIntensiveValue' set but not used [-Wunused-but-set-variable] CObjectInterface * pIntensiveValue = NULL; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1722:22: warning: variable 'pCompartment' set but not used [-Wunused-but-set-variable] CObjectInterface * pCompartment = NULL; ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEq.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi 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handled in switch [-Wswitch] switch (undoData.getType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMetab.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMMLOutput.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMMLOutput.cpp: In static member function 'static void CMMLOutput::writeDifferentialEquations(std::ostream&, CModel*, bool, bool, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMMLOutput.cpp:279:8: warning: variable 'hasContents' set but not used [-Wunused-but-set-variable] bool hasContents = false; ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o cd 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelAnalyzer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelMerging.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelMerging.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelMerging.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelMerging.cpp: In member function 'void CModelMerging::simpleCall(std::vector >&, std::vector >&)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelMerging.cpp:979:48: warning: 'metab1' may be used uninitialized in this function [-Wmaybe-uninitialized] metab1->getObjectName().c_str(), metab->getObjectName().c_str()); ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelExpansion.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelParameterGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelParameterSet.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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member function 'void CMoiety::initObjects()': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMoiety.cpp:117:17: warning: unused variable 'pObject' [-Wunused-variable] CDataObject * pObject = addObjectReference("Amount", mIAmount, CDataObject::ValueDbl); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.h:28, from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:32: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h: In constructor 'CModelEntity::CModelEntity(const string&, const CDataContainer*, const string&, const CFlags&)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:458:20: warning: 'CModelEntity::mpModel' will be initialized after [-Wreorder] mutable CModel * mpModel; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:439:15: warning: 'std::__cxx11::string CModelEntity::mUnitExpression' [-Wreorder] std::string mUnitExpression; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:127:1: warning: when initialized here [-Wreorder] CModelEntity::CModelEntity(const std::string & name, ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.h:28, from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:32: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h: In constructor 'CModelEntity::CModelEntity(const CModelEntity&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:458:20: warning: 'CModelEntity::mpModel' will be initialized after [-Wreorder] mutable CModel * mpModel; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:439:15: warning: 'std::__cxx11::string CModelEntity::mUnitExpression' [-Wreorder] std::string mUnitExpression; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:153:1: warning: when initialized here [-Wreorder] CModelEntity::CModelEntity(const CModelEntity & src, ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:2355: warning: ignoring #pragma region [-Wunknown-pragmas] #pragma region //find_experiment /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:2405: warning: ignoring #pragma endregion [-Wunknown-pragmas] #pragma endregion //find_experiment /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp: In member function 'bool CModel::handleUnusedMetabolites()': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:749:23: warning: variable 'pStoiEnd' set but not used [-Wunused-but-set-variable] C_FLOAT64 * pStoi, *pStoiEnd, *pRowEnd; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp: In function 'const CObjectInterface* getDependentOrNull(const std::map&, int)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:2343:22: warning: comparison of integer expressions of different signedness: 'const long unsigned int' and 'int' [-Wsign-compare] if (it->second == index) return it->first; ~~~~~~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CObjectLists.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CState.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReactionInterface.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReactionInterface.cpp: In member function 'std::__cxx11::string CReactionInterface::getEffectiveKineticLawUnit() const': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReactionInterface.cpp:1423:10: warning: enumeration value 'Default' not handled in switch [-Wswitch] switch (getEffectiveKineticLawUnitType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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/builddir/build/BUILD/COPASI-Build-184/copasi/model/CReaction.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReaction.cpp: In member function 'CIssue CReaction::compile()': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReaction.cpp:704:107: warning: operation on 'Role' may be undefined [-Wsequence-point] CFunctionParameter::Role Role = i == 1 ? CFunctionParameter::Role::SUBSTRATE : Role = CFunctionParameter::Role::PRODUCT; ~~~~~^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dfnorm.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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'/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dprja.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o cd 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dsolsy.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/drcheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dstoda.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodCoranaWalk.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodLevenbergMarquardt.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodLevenbergMarquardt.cpp: In member function 'virtual bool COptMethodLevenbergMarquardt::optimise()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodLevenbergMarquardt.cpp:126:28: warning: variable 'nrhs' set but not used [-Wunused-but-set-variable] C_INT dim, starts, info, nrhs; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPraxis.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPS.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPS.cpp: In member function 'bool COptMethodPS::reachedStdDeviation()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPS.cpp:434:15: warning: unused variable 'pEnd' [-Wunused-variable] C_FLOAT64 * pEnd = pValue + mPopulationSize; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSA.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSRES.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodStatistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodStatistics.cpp: In member function 'virtual bool COptMethodStatistics::optimise()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodStatistics.cpp:88:8: warning: variable 'Continue' set but not used [-Wunused-but-set-variable] bool Continue = true; ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp: In member function 'bool COptMethodSS::combination()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp:838:13: warning: variable 'la' set but not used [-Wunused-but-set-variable] C_FLOAT64 la; // for orders of magnitude ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp:845:22: warning: variable 'xprval' set but not used [-Wunused-but-set-variable] C_FLOAT64 xnewval, xprval; // to hold temp value of "parent" in go-beyond strategy ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptPopulationMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodTruncatedNewton.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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/builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In member function 'int CTruncatedNewton::lmqn_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, int*, int*, int*, double*, double*, double*, double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:443:13: warning: variable 'fold' set but not used [-Wunused-but-set-variable] C_FLOAT64 fold, oldf; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:447:9: warning: variable 'lhyr' set but not used [-Wunused-but-set-variable] C_INT lhyr; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:457:27: warning: variable 'fstop' set but not used [-Wunused-but-set-variable] C_FLOAT64 gnorm, ftest, fstop, pnorm, rteps, xnorm; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In member function 'int CTruncatedNewton::lmqnbc_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, double*, double*, int*, int*, int*, int*, double*, double*, double*, double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:842:13: warning: variable 'fold' set but not used [-Wunused-but-set-variable] C_FLOAT64 fold, oldf; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:847:9: warning: variable 'lhyr' set but not used [-Wunused-but-set-variable] C_INT lhyr; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:858:13: warning: variable 'fstop' set but not used [-Wunused-but-set-variable] C_FLOAT64 fstop, pnorm, rteps, xnorm; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In function 'int lsout_(int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:13: warning: variable 'ybnd' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:19: warning: variable 'ya' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:23: warning: variable 'yb' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:27: warning: variable 'yu' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:31: warning: variable 'yw' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In function 'int initp3_(double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2551:13: warning: variable 'cond' set but not used [-Wunused-but-set-variable] C_FLOAT64 cond; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/output/COutputHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperimentFileInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperimentObjectMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION 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-I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperiment.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperiment.cpp: In member function 'double CExperiment::getErrorMeanSD(const CObjectInterface*, const double&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperiment.cpp:1626:20: warning: unused variable 'pScale' [-Wunused-variable] const C_FLOAT64 *pScale = mScale.array() + it->second; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plot/CPlotItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/randomGenerator/CPermutation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/randomGenerator/Cmt19937.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/randomGenerator/CRandom.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CKeyFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CFitProblem.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CFitProblem.cpp: In member function 'virtual void CFitProblem::updateContainer(const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CFitProblem.cpp:1108:17: warning: variable 'pExp' set but not used [-Wunused-but-set-variable] CExperiment * pExp = NULL; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReport.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReport.cpp: In member function 'virtual void CReport::output(const COutputInterface::Activity&)': /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReport.cpp:118:10: warning: enumeration value 'MONITORING' not handled in switch [-Wswitch] switch (activity) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportBody.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.cpp:30: /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.h: In constructor 'CReportDefinition::CReportDefinition(const CReportDefinition&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.h:63:20: warning: 'CReportDefinition::mPrecision' will be initialized after [-Wreorder] unsigned C_INT32 mPrecision; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.h:55:38: warning: 'std::vector CReportDefinition::mHeaderVector' [-Wreorder] std::vector mHeaderVector; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.cpp:87:1: warning: when initialized here [-Wreorder] CReportDefinition::CReportDefinition(const CReportDefinition & src, ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinitionVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/ConverterASTNode.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/ConverterASTNode.cpp: In member function 'void ConverterASTNode::setChildren(List*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/ConverterASTNode.cpp:47:20: warning: unused variable 'size' [-Wunused-variable] unsigned int size = mFunction->getNumChildren(); ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/COutputAssistant.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/CSBMLunitInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/Expression2PresentationMML.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In function 'void addSymbolComponentToUnitDefinition(UnitDefinition*, CUnit::SymbolComponent&, const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:3591:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] if (unitKind != C_INVALID_INDEX) /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:3596:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] if (unitKind == C_INVALID_INDEX) /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In function 'void addInitialAssignmentsToModel(SBMLDocument*, std::map, Parameter*>&, const CDataModel&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:3936:11: warning: unused variable 'result' [-Wunused-variable] int result = doc->getModel()->addParameter(param); ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In member function 'bool CSBMLExporter::createSBMLDocument(CDataModel&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:4265:15: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In static member function 'static XMLNode* CSBMLExporter::createSBMLNotes(const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:8684:31: warning: unused variable 'tmp' [-Wunused-variable] int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", prefix); ^~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:8750:27: warning: unused variable 'tmp' [-Wunused-variable] int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", ""); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/Expression2PresentationMMLUnits.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp: In member function 'void SBMLImporter::replaceAmountReferences(ConverterASTNode*, Model*, double, std::map&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp:5053:43: warning: variable 'pSpecies' set but not used [-Wunused-but-set-variable] ASTNode *pAvogadro = NULL, *pSpecies = NULL; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp: In member function 'void SBMLImporter::applyConversionFactors()': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp:10882:25: warning: variable 'pE' set but not used [-Wunused-but-set-variable] const CChemEqElement* pE = NULL; ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanMethod.cpp: In member function 'virtual void CScanItemRandom::step()': /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanMethod.cpp:321:22: warning: 'Value' may be used uninitialized in this function [-Wmaybe-uninitialized] *mpObjectValue = Value; ~~~~~~~~~~~~~~~^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensTask.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensTask.cpp: In member function 'virtual bool CSensTask::process(const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensTask.cpp:106:17: warning: unused variable 'pProblem' [-Wunused-variable] CSensProblem* pProblem = ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp: In static member function 'static void CSensProblem::copySensItemToParameterGroup(const CSensItem*, CCopasiParameterGroup*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:161:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!pg) return; if (!si) return; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:161:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!pg) return; if (!si) return; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp: In static member function 'static void CSensProblem::copyParameterGroupToSensItem(const CCopasiParameterGroup*, CSensItem*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:174:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!pg) return; if (!si) return; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:174:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!pg) return; if (!si) return; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCATask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp: In member function 'void CMCAMethod::calculateUnscaledElasticities(double)': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:220:32: warning: unused variable 'TransientDependencies' [-Wunused-variable] const CMathDependencyGraph & TransientDependencies = mpContainer->getTransientDependencies(); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:223:17: warning: unused variable 'pParticleFluxObjectEnd' [-Wunused-variable] CMathObject * pParticleFluxObjectEnd = pParticleFluxObject + numReacs; ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:225:17: warning: unused variable 'pSpeciesObjectEnd' [-Wunused-variable] CMathObject * pSpeciesObjectEnd = pSpeciesObjectStart + numMetabs; ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp: In member function 'bool CMCAMethod::scaleMCA(const bool&, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:426:10: warning: unused variable 'numReacs' [-Wunused-variable] size_t numReacs = mpContainer->getParticleFluxes().size(); ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static REACTION_TYPE CCellDesignerImporter::reactionTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:4866:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static MODIFICATION_LINK_TYPE CCellDesignerImporter::modificationLinkTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:4954:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static MODIFICATION_TYPE CCellDesignerImporter::modificationTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:5022:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static SPECIES_MODIFICATION_TYPE CCellDesignerImporter::speciesModificationTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:10901:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CSteadyStateMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'void CNewtonMethod::cleanup()': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:129:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (mIpiv) delete [] mIpiv; mIpiv = NULL; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:129:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (mIpiv) delete [] mIpiv; mIpiv = NULL; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'double CNewtonMethod::targetFunction()': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:615:13: warning: unused variable 'Number2Quantity' [-Wunused-variable] C_FLOAT64 Number2Quantity = mpContainer->getModel().getNumber2QuantityFactor(); ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'virtual bool CNewtonMethod::initialize(const CSteadyStateProblem*)': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:690:23: warning: variable 'pTrajectoryMethod' set but not used [-Wunused-but-set-variable] CTrajectoryMethod * pTrajectoryMethod = NULL; ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'size_t CNewtonMethod::solveAxEqB(const CMatrix&, CVector&, const CVectorCore&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:1027:17: warning: unused variable 'Number2Quantity' [-Wunused-variable] C_FLOAT64 Number2Quantity = mpContainer->getModel().getNumber2QuantityFactor(); ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX 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-c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CSteadyStateTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:60: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h: In constructor 'CHybridMethodODE45::CHybridMethodODE45(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:354:26: warning: 'CHybridMethodODE45::mSpeciesRateUpdateSequence' will be initialized after [-Wreorder] CCore::CUpdateSequence mSpeciesRateUpdateSequence; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:323:31: warning: 'CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus' [-Wreorder] CRungeKutta::RKMethodStatus mRKMethodStatus; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:78:1: warning: when initialized here [-Wreorder] CHybridMethodODE45::CHybridMethodODE45(const CDataContainer * pParent, ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:60: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h: In constructor 'CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:354:26: warning: 'CHybridMethodODE45::mSpeciesRateUpdateSequence' will be initialized after [-Wreorder] CCore::CUpdateSequence mSpeciesRateUpdateSequence; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:323:31: warning: 'CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus' [-Wreorder] CRungeKutta::RKMethodStatus mRKMethodStatus; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:136:1: warning: when initialized here [-Wreorder] CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45 & src, ^~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionRKMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionRKMethod.cpp: In member function 'virtual void CHybridNextReactionRKMethod::integrateDeterministicPart(double)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionRKMethod.cpp:88:22: warning: unused variable 'react' [-Wunused-variable] CHybridStochFlag * react = NULL; ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethod.cpp: In member function 'void CHybridMethod::calculateDerivative(CVectorCore&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethod.cpp:323:11: warning: unused variable 'bal' [-Wunused-variable] C_INT32 bal = 0; ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRootFinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. 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/builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h: In constructor 'CLsodaMethod2::CLsodaMethod2(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:247:9: warning: 'CLsodaMethod2::mNumRoots' will be initialized after [-Wreorder] C_INT mNumRoots; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:187:13: warning: 'double CLsodaMethod2::mTime' [-Wreorder] C_FLOAT64 mTime; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:23:1: warning: when initialized here [-Wreorder] CLsodaMethod2::CLsodaMethod2(const CDataContainer * pParent, ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h: In constructor 'CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:247:9: warning: 'CLsodaMethod2::mNumRoots' will be initialized after [-Wreorder] C_INT mNumRoots; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:187:13: warning: 'double CLsodaMethod2::mTime' [-Wreorder] C_FLOAT64 mTime; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:56:1: warning: when initialized here [-Wreorder] CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2 & src, ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp: In member function 'virtual CTrajectoryMethod::Status CLsodaMethod2::step(const double&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:145:13: warning: unused variable 'StartTime' [-Wunused-variable] C_FLOAT64 StartTime = mTime; ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. 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/builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp: In member function 'void CRungeKutta::doOneStep()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:426:10: warning: unused variable 's' [-Wunused-variable] size_t s = mStage - 1; ^ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp: In member function 'void CRungeKutta::setInitialStepSize()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:705:13: warning: unused variable 'absT' [-Wunused-variable] C_FLOAT64 absT = fabs(mTLeft); ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp: In member function 'void CRungeKutta::checkRoots()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:797:15: warning: unused variable 'pLeftRoots' [-Wunused-variable] C_FLOAT64 * pLeftRoots = mRootValuesLeft; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:800:15: warning: unused variable 'pRightRoots' [-Wunused-variable] C_FLOAT64 * pRightRoots = mRootValueRight; ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTauLeapMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTauLeapMethod.cpp: In member function 'bool CTauLeapMethod::updateSystem()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTauLeapMethod.cpp:360:21: warning: unused variable 'pKEnd' [-Wunused-variable] const C_FLOAT64 * pKEnd = pK + mNumReactions; ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochasticRungeKuttaRI5.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochasticRungeKuttaRI5.cpp: In member function 'void CStochasticRungeKuttaRI5::generateRandomNumbers()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:456:15: warning: unused variable 'pRandomMatrix' [-Wunused-variable] C_FLOAT64 * pRandomMatrix = mRandomIMatrix.array(); ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTimeSeries.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTimeSeries.cpp: In member function 'virtual bool CTimeSeries::compile(CObjectInterface::ContainerList)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTimeSeries.cpp:176:14: warning: enumeration value 'Undefined' not handled in switch [-Wswitch] switch (pObject->getSimulationType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:29: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h: In constructor 'CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: 'CTrajAdaptiveSA::mNumReactionSpecies' will be initialized after [-Wreorder] size_t mNumReactionSpecies; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: 'unsigned int CTrajAdaptiveSA::mMaxSteps' [-Wreorder] unsigned C_INT32 mMaxSteps; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:39:1: warning: when initialized here [-Wreorder] CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer * pParent, ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:29: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h: In constructor 'CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: 'CTrajAdaptiveSA::mNumReactionSpecies' will be initialized after [-Wreorder] size_t mNumReactionSpecies; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: 'unsigned int CTrajAdaptiveSA::mMaxSteps' [-Wreorder] unsigned C_INT32 mMaxSteps; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:65:1: warning: when initialized here [-Wreorder] CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA & src, ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:33: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h: In constructor 'CTrajectoryProblem::CTrajectoryProblem(const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:188:10: warning: 'CTrajectoryProblem::mpAutomaticStepSize' will be initialized after [-Wreorder] bool * mpAutomaticStepSize; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:183:15: warning: 'double* CTrajectoryProblem::mpDuration' [-Wreorder] C_FLOAT64 * mpDuration; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:42:1: warning: when initialized here [-Wreorder] CTrajectoryProblem::CTrajectoryProblem(const CDataContainer * pParent): ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:33: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h: In constructor 'CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:188:10: warning: 'CTrajectoryProblem::mpAutomaticStepSize' will be initialized after [-Wreorder] bool * mpAutomaticStepSize; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:183:15: warning: 'double* CTrajectoryProblem::mpDuration' [-Wreorder] C_FLOAT64 * mpDuration; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:63:1: warning: when initialized here [-Wreorder] CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem & src, ^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp: In member function 'virtual void CTrajectoryMethodDsaLsodar::start()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:495:3: warning: 'pUpdateSequence' may be used uninitialized in this function [-Wmaybe-uninitialized] for (; pReaction != pReactionEnd; ++pReaction, ++pUpdateSequence, ++pPropensityObject, ++pAmu) ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporterBM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporterXPPAUT.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporterC.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::mat_anal_mod_space(int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:402:9: warning: variable 'fast' set but not used [-Wunused-but-set-variable] C_INT fast; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::mat_anal_fast_space(int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:460:9: warning: variable 'fast' set but not used [-Wunused-but-set-variable] C_INT fast; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::mat_anal_fast_space_thomas(int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:518:9: warning: variable 'fast' set but not used [-Wunused-but-set-variable] C_INT fast; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::sylvester(int, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:1640:9: warning: variable 'flag_sylvester' set but not used [-Wunused-but-set-variable] C_INT flag_sylvester; ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'virtual void CILDMModifiedMethod::step(const double&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:112:9: warning: variable 'flag_jacob' set but not used [-Wunused-but-set-variable] C_INT flag_jacob; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:174:9: warning: variable 'flag_deufl' set but not used [-Wunused-but-set-variable] C_INT flag_deufl; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:219:9: warning: variable 'flag_schur' set but not used [-Wunused-but-set-variable] C_INT flag_schur; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'void CILDMModifiedMethod::deuflhard_metab(int&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:503:9: warning: variable 'flag_deufl' set but not used [-Wunused-but-set-variable] C_INT flag_deufl; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'void CILDMModifiedMethod::newton_new(int*, int&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:615:25: warning: variable 'flag_newton' set but not used [-Wunused-but-set-variable] C_INT nrhs, ok, fast, flag_newton; ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'void CILDMModifiedMethod::newton_for_timestep(int, double&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:843:27: warning: variable 'flag_newton' set but not used [-Wunused-but-set-variable] C_INT i, iter, itermax, flag_newton; ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp: In member function 'virtual void CILDMMethod::step(const double&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:103:9: warning: variable 'flag_jacob' set but not used [-Wunused-but-set-variable] C_INT flag_jacob; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:218:9: warning: variable 'flag_schur' set but not used [-Wunused-but-set-variable] C_INT flag_schur; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp: In member function 'void CILDMMethod::deuflhard(int&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:881:9: warning: variable 'flag_deufl' set but not used [-Wunused-but-set-variable] C_INT flag_deufl; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:1024:13: warning: variable 'max1' set but not used [-Wunused-but-set-variable] C_FLOAT64 max1; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSATask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp: In member function 'int CCSPMethod::isBlockDiagonal(int&, int&, CMatrix&, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:15: warning: variable 'imax' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:21: warning: variable 'jmax' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:27: warning: variable 'imaxl' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:34: warning: variable 'jmaxl' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CDataValue.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CDataValue.cpp: In member function 'void CDataValue::assignData(const CDataValue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CDataValue.cpp:424:10: warning: enumeration value 'DATA_VALUES' not handled in switch [-Wswitch] switch (rhs.mType) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoStack.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBaseUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBrent.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBrent.cpp: In static member function 'static bool CBrent::findRoot(double, double, CBrent::Eval*, double*, double*, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBrent.cpp:72:44: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] (!mflag && fabs(s - b) >= fabs(c - d) / 2.0) || ~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser_yacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiException.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In constructor 'CUndoData::CUndoData(const CUndoData::Type&, const CDataObject*, const size_t&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:49:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::addProperty(const string&, const CDataValue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:113:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::addProperty(const string&, const CDataValue&, const CDataValue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:142:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::isSetProperty(const string&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:181:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::appendData(const CData&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:204:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::appendData(const CData&, const CData&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:226:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::apply(const CDataModel&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:293:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::undo(const CDataModel&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:315:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'std::__cxx11::string CUndoData::getObjectDisplayName() const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:357:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:374:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'std::__cxx11::string CUndoData::getObjectType() const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:402:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::operator<(const CUndoData&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:421:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:459:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'const CData& CUndoData::getData(const bool&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:605:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser_lex.cpp CUnitParser_lex.cpp: In member function 'int CUnitParser::yy_get_next_buffer()': CUnitParser_lex.cpp:1320:44: warning: comparison of integer expressions of different signedness: 'int' and 'yy_size_t' {aka 'long unsigned int'} [-Wsign-compare] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMessage.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMessage.cpp:34: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const bool]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp: In static member function 'static CCopasiMethod* CCopasiMethod::createMethod(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'RandomSearchMaster' not handled in switch [-Wswitch] switch (methodType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'HybridGASA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'LSODA2' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'analyticsMethod' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiParameterGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CDependencyGraph.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp:30: /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.h: In constructor 'CCopasiTask::CCopasiTask()': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.h:489:24: warning: 'CCopasiTask::mInitialState' will be initialized after [-Wreorder] CVector< C_FLOAT64 > mInitialState; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.h:483:20: warning: 'CMathContainer* CCopasiTask::mpContainer' [-Wreorder] CMathContainer * mpContainer; ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp:91:1: warning: when initialized here [-Wreorder] CCopasiTask::CCopasiTask(): ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp: In member function 'virtual void CCopasiTask::separate(const COutputInterface::Activity&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp:449:12: warning: enumeration value 'MONITORING' not handled in switch [-Wswitch] switch (activity) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CIndexedPriorityQueue.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CProcessReport.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CLinkMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CSlider.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CTableCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.h: In constructor 'CUnitParserBase::CUnitParserBase()': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.h:81:20: warning: 'CUnitParserBase::mPosition' will be initialized after [-Wreorder] unsigned C_INT32 mPosition; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.h:80:10: warning: 'CUnit* CUnitParserBase::mpUnit' [-Wreorder] CUnit *mpUnit; ^~~~~~ 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp: In member function 'void CValidity::add(const CIssue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp:267:10: warning: enumeration value 'Success' not handled in switch [-Wswitch] switch (issue.getSeverity()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp: In member function 'void CValidity::remove(const CIssue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp:306:10: warning: enumeration value 'Success' not handled in switch [-Wswitch] switch (issue.getSeverity()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CopasiTime.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp: In function 'std::__cxx11::string ISODateTime(tm*)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp:43:20: warning: '%.02d' directive writing between 2 and 11 bytes into a region of size between 8 and 18 [-Wformat-overflow=] sprintf(str, "%d-%.02d-%.02d %.02d:%.02d:%.02d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp:43:20: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:861, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6361, from /usr/include/c++/8/string:52, from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp:23: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 72 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/CExpat.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp: In member function 'CXMLHandler* CXMLHandlerFactory::createHandler(const CXMLHandler::Type&)': /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'AFTER' not handled in switch [-Wswitch] switch (type) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'BasePoint1' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'BasePoint2' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Body' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'CurveSegment' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'DelayExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'End' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Expression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Footer' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Header' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'InitialExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'MathML' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'NoiseExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Position' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'PriorityExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Problem' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Start' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Text' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'TriggerExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Unit' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/COPASIHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLParserData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CallParameterHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CharacterDataHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/GUIHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/GroupHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/MetaboliteHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModelParameterGroupHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/PlotItemHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/PointHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RectangleHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RenderCurveElementHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RenderInformationHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o cd 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RenderTextHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ReportDefinitionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/SBMLMapHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/TextGlyphHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/UnitDefinitionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/UnsupportedAnnotationHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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/builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp: In member function 'void CSEDMLExporter::createSEDMLDocument(CDataModel&, std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp:169:17: warning: unused variable 'pModel' [-Wunused-variable] const CModel* pModel = dataModel.getModel(); ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp:170:28: warning: unused variable 'plotDef' [-Wunused-variable] COutputDefinitionVector *plotDef = dataModel.getPlotDefinitionList(); ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp: In member function 'std::__cxx11::string CSEDMLExporter::createSteadyStateTask(CDataModel&, const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp:380:23: warning: unused variable 'tProblem' [-Wunused-variable] CTrajectoryProblem* tProblem = static_cast(pTask->getProblem()); ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp: In member function 'void SEDMLImporter::readListOfPlotsFromSedMLOutput(COutputDefinitionVector*, CModel*, SedDocument*, std::map&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp:268:41: warning: unused variable 'copasiMap' [-Wunused-variable] std::map& copasiMap = pModel->getObjectDataModel()->getCopasi2SBMLMap(); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp:270:28: warning: unused variable 'pReports' [-Wunused-variable] CReportDefinitionVector* pReports = mpDataModel->getReportDefinitionList(); ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp: In member function 'CModel* SEDMLImporter::importFirstSBMLModel(CProcessReport*, SBMLDocument*&, std::map&, CListOfLayouts*&, CDataModel*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp:956:12: warning: unused variable 'valueChanged' [-Wunused-variable] bool valueChanged = false; ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Built target libCOPASISE-core make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi /builddir/build/BUILD/COPASI-Build-184/build/copasi/CMakeFiles/libCOPASISE-static.dir/DependInfo.cmake --color= Scanning dependencies of target libCOPASISE-static make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Linking CXX static library libCOPASISE.a cd 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'/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/bindings/cpp_examples/example1/CMakeFiles/example1.dir/example1.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example1 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example1.dir/example1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1/example1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Generating barChart/ui_CQBaseWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o 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/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/FontChooser.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/bindings/cpp_examples/assignParameterSet/CMakeFiles/assignParameterSet.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/assignParameterSet && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/assignParameterSet.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/main.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/main.cpp:71:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] bool result = false; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Building CXX object copasi/bindings/cpp_examples/calculateSolutionStatistic/CMakeFiles/calculateSolutionStatistic.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/calculateSolutionStatistic && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/calculateSolutionStatistic.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp:128:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] bool result = false; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Generating layoutUI/ui_NodeSizePanel.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/ui_NodeSizePanel.h /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/NodeSizePanel.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating layoutUI/ui_ParaPanel.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/ui_ParaPanel.h /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/ParaPanel.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating MIRIAMUI/ui_CQMiriamWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/ui_CQMiriamWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQMiriamWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating MIRIAMUI/ui_CQRDFTreeView.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/ui_CQRDFTreeView.h /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQRDFTreeView.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating plotUI/ui_BandedGraphWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/ui_BandedGraphWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/BandedGraphWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating plotUI/ui_CQPlotSubwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/ui_CQPlotSubwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQPlotSubwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating plotUI/ui_CQSpectogramWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/ui_CQSpectogramWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQSpectogramWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating plotUI/ui_HistoWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/ui_HistoWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/HistoWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating plotUI/ui_PlotSubwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/ui_PlotSubwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/PlotSubwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating plotUI/ui_curve2dwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/ui_curve2dwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/curve2dwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CBrowseModelVersionDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CBrowseModelVersionDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CBrowseModelVersionDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CCreateModelVersionDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CCreateModelVersionDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CCreateModelVersionDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CEntityProvenanceDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CEntityProvenanceDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CLNAResultSubwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CLNAResultSubwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CLNAResultSubwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CMCAResultSubwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CMCAResultSubwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CMCAResultSubwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CProvenanceDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CProvenanceDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 30%] Generating UI/ui_CQAnalyticsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQAnalyticsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQAnalyticsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQArrayAnnotationsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQArrayAnnotationsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQArrayAnnotationsWidget.ui /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQArrayAnnotationsWidget.ui: Warning: The name 'gridLayout' (QGridLayout) is already in use, defaulting to 'gridLayout1'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQBrowserPane.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQBrowserPane.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQBrowserPane.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQCheckModelWindow.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQCheckModelWindow.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCheckModelWindow.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQCompartment.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQCompartment.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartment.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQCompartmentCopyOptions.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQCompartmentCopyOptions.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentCopyOptions.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQCompartmentsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQCompartmentsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQCrossSectionTaskWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQCrossSectionTaskWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCrossSectionTaskWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQDependenciesWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQDependenciesWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependenciesWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQDependencyDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQDependencyDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQDependencyWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQDependencyWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQDifferentialEquations.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQDifferentialEquations.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDifferentialEquations.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQEFMListWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQEFMListWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMListWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQEFMResultWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQEFMResultWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMResultWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQEFMWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQEFMWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 31%] Generating UI/ui_CQEventWidget1.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQEventWidget1.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEventWidget1.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQEventsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQEventsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEventsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQExpandModelData.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQExpandModelData.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExpandModelData.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQExperimentData.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQExperimentData.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentData.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQExperimentSelection.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQExperimentSelection.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentSelection.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQExpressionMmlStackedWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQExpressionMmlStackedWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExpressionMmlStackedWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQFittingItemWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQFittingItemWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingItemWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQFittingResult.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQFittingResult.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQFittingResultTab1.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQFittingResultTab1.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResultTab1.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQFittingWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQFittingWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQFunctionsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQFunctionsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFunctionsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQGlobalQuantitiesWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQGlobalQuantitiesWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQGlobalQuantitiesWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQLNAWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQLNAWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLNAWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQLayoutsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQLayoutsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLayoutsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQLyapResultWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQLyapResultWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLyapResultWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQLyapWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQLyapWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLyapWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 32%] Generating UI/ui_CQMCAWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMCAWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMCAWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQMathMatrixWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMathMatrixWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMathMatrixWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQMatrixDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMatrixDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMatrixDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQMergingData.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMergingData.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMergingData.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQModelValue.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQModelValue.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQModelWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQModelWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQMoietiesTaskResult.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMoietiesTaskResult.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMoietiesTaskResult.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQMoietiesTaskWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMoietiesTaskWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMoietiesTaskWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQMultipleSelectionDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQMultipleSelectionDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMultipleSelectionDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQNameSelectionDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQNameSelectionDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQNameSelectionDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQNotes.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQNotes.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQNotes.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQOptimizationResult.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQOptimizationResult.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationResult.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQOptimizationWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQOptimizationWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQOscillationTaskWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQOscillationTaskWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOscillationTaskWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQParameterEstimationResult.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQParameterEstimationResult.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterEstimationResult.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 33%] Generating UI/ui_CQParameterOverviewWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQParameterOverviewWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterOverviewWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQParameterSetWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQParameterSetWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterSetWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQParameterSetsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQParameterSetsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterSetsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQParametersWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQParametersWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParametersWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQPlotsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQPlotsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPlotsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQPreferenceDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQPreferenceDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPreferenceDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQProgressDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQProgressDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQProgressItem.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQProgressItem.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressItem.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQProgressItemBar.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQProgressItemBar.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressItemBar.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQProgressItemText.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQProgressItemText.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressItemText.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQReactionsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQReactionsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReactionsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQReportDefinition.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQReportDefinition.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportDefinition.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQReportDefinitionSelect.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQReportDefinitionSelect.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportDefinitionSelect.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQReportsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQReportsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQScrolledDependenciesWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQScrolledDependenciesWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQScrolledDependenciesWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQSensResultWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQSensResultWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSensResultWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 34%] Generating UI/ui_CQSpeciesDetail.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQSpeciesDetail.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSpeciesDetail.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQSpeciesWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQSpeciesWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSpeciesWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQSplashWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQSplashWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSplashWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQStartValueReset.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQStartValueReset.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQStartValueReset.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQSteadyStateResult.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQSteadyStateResult.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSteadyStateResult.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTSSAResultSubWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTSSAResultSubWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTSSAResultSubWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTSSAWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTSSAWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTSSAWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTabWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTabWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTabWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTaskBtnWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTaskBtnWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskBtnWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTaskHeaderWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTaskHeaderWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskHeaderWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTaskMethodWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTaskMethodWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskMethodWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTextDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTextDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTextDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTimeSeriesWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTimeSeriesWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTimeSeriesWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQTrajectoryWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQTrajectoryWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTrajectoryWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQUndoHistoryDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQUndoHistoryDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoHistoryDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 35%] Generating UI/ui_CQUnitDetail.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQUnitDetail.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUnitDetail.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CQUnitsWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQUnitsWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUnitsWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CQUpdateAvogadro.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CQUpdateAvogadro.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUpdateAvogadro.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CScanWidgetRandom.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CScanWidgetRandom.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetRandom.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CScanWidgetRepeat.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CScanWidgetRepeat.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetRepeat.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CScanWidgetScan.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CScanWidgetScan.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetScan.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CScanWidgetTask.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CScanWidgetTask.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetTask.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_CUpDownSubwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_CUpDownSubwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CUpDownSubwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_DefaultplotDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_DefaultplotDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DefaultplotDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_FunctionWidget1.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_FunctionWidget1.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/FunctionWidget1.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_ReactionsWidget1.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_ReactionsWidget1.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ReactionsWidget1.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_SensitivitiesWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_SensitivitiesWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SensitivitiesWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_SliderDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_SliderDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SliderDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_SliderSettingsDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_SliderSettingsDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SliderSettingsDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_StateSubwidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_StateSubwidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 36%] Generating UI/ui_SteadyStateWidget.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_SteadyStateWidget.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SteadyStateWidget.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating UI/ui_objectdebug.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/ui_objectdebug.h /builddir/build/BUILD/COPASI-Build-184/copasi/UI/objectdebug.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating wizard/ui_wizard.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard/ui_wizard.h /builddir/build/BUILD/COPASI-Build-184/copasi/wizard/wizard.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating qlayout/ui_CQAnimationControls.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/ui_CQAnimationControls.h /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQAnimationControls.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating qlayout/ui_CQAnimationSettingsEditor.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/ui_CQAnimationSettingsEditor.h /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQAnimationSettingsEditor.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating qlayout/ui_CQAnimationWindow.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/ui_CQAnimationWindow.h /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQAnimationWindow.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating qlayout/ui_CQEffectDescriptionEdit.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/ui_CQEffectDescriptionEdit.h /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQEffectDescriptionEdit.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating undoUI/ui_CQUndoDialog.h cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI/ui_CQUndoDialog.h /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDialog.ui make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating qrc_copasi.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/lib64/qt5/bin/rcc --name copasi --output /builddir/build/BUILD/COPASI-Build-184/build/copasi/qrc_copasi.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/resourcesUI/copasi.qrc make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating barChart/moc_CQBaseWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_CQBaseWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating barChart/moc_qwt3dBars.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dBars.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dBars.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating barChart/moc_qwt3dColor.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dColor.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dColor.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating barChart/moc_qwt3dPlot.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dPlot.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating barChart/moc_qwt3dScale.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dScale.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dScale.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating layoutUI/moc_BezierCurve.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_BezierCurve.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/BezierCurve.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating layoutUI/moc_CArrow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CArrow.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CArrow.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 37%] Generating layoutUI/moc_CCompartmentGraphNode.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CCompartmentGraphNode.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CCompartmentGraphNode.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CDataEntity.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CDataEntity.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CDataEntity.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CGraphCurve.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CGraphCurve.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CGraphCurve.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CGraphNode.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CGraphNode.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CGraphNode.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CLabel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CLabel.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CLabel.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQAutolayoutWizard.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQAutolayoutWizard.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQCurrentValueTable.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQCurrentValueTable.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQFontRenderer.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQFontRenderer.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQFontRenderer.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQGLLayoutPainter.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQGLLayoutPainter.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQGLLayoutViewer.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQGLLayoutViewer.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQGLNetworkPainter.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQGLNetworkPainter.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQGLViewport.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQGLViewport.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQLayoutMainWindow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQLayoutMainWindow.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQLayoutThread.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQLayoutThread.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQNewMainWindow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQNewMainWindow.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Linking CXX executable assignParameterSet cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/assignParameterSet && /usr/bin/cmake -E cmake_link_script CMakeFiles/assignParameterSet.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/assignParameterSet.dir/main.cpp.o -o assignParameterSet -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Generating layoutUI/moc_CQPlayerControlWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQPlayerControlWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 38%] Built target assignParameterSet make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/build.make copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Linking CXX executable example1 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example1 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example1.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example1.dir/example1.cpp.o -o example1 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 39%] Built target example1 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/build.make copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 39%] Generating layoutUI/moc_CQQtImageTexturizer.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQQtImageTexturizer.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQQtImageTexturizer.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example10 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/DependInfo.cmake --color= Scanning dependencies of target example10 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/build.make copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 39%] Generating layoutUI/moc_CQScreenshotOptionsDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQScreenshotOptionsDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example2 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example2 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/DependInfo.cmake --color= Scanning dependencies of target example2 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/build.make copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_CQSpringLayoutParameterWindow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQSpringLayoutParameterWindow.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_CSimSummaryInfo.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CSimSummaryInfo.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CSimSummaryInfo.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_CVisParameters.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CVisParameters.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CVisParameters.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_FontChooser.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_FontChooser.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_NodeSizePanel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_NodeSizePanel.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_ParaPanel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_ParaPanel.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating layoutUI/moc_RGTextureSpec.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_RGTextureSpec.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/RGTextureSpec.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQCreatorDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQCreatorDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQMiriamWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQMiriamWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQModifiedDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQModifiedDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQRDFTreeView.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQRDFTreeView.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQRDFTreeViewItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQRDFTreeViewItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQRDFTreeViewItem.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Generating MIRIAMUI/moc_CQReferenceDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQReferenceDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_BandedGraphWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_BandedGraphWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_C2DCurveData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_C2DCurveData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/C2DCurveData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 29%] Linking CXX executable calculateSolutionStatistic cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/calculateSolutionStatistic && /usr/bin/cmake -E cmake_link_script CMakeFiles/calculateSolutionStatistic.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/calculateSolutionStatistic.dir/main.cpp.o -o calculateSolutionStatistic -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_C2DPlotCurve.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_C2DPlotCurve.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/C2DPlotCurve.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Built target calculateSolutionStatistic make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/build.make copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example3 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example3 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/DependInfo.cmake --color= Scanning dependencies of target example3 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/build.make copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CBandedGraphData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CBandedGraphData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CBandedGraphData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Building CXX object copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/example2.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example2 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example2/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example2/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example2 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example2.dir/example2.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example2/example2.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CHistoCurveData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CHistoCurveData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CHistoCurveData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CLinearColorMap.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CLinearColorMap.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CLinearColorMap.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_COutputHandlerPlot.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_COutputHandlerPlot.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/COutputHandlerPlot.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 40%] Building CXX object copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/example10.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example10 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example10.dir/example10.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/example10.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/example10.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/example10.cpp:209:27: warning: unused variable 'pSSMethod' [-Wunused-variable] CSteadyStateMethod* pSSMethod = dynamic_cast(pSSTask->getMethod()); ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CPlotSpectogram.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CPlotSpectogram.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CPlotSpectogram.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CQPlotColors.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQPlotColors.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQPlotColors.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CQPlotEditWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQPlotEditWidget.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQPlotEditWidget.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CQPlotSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQPlotSubwidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CQSpectogramWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQSpectogramWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CSpectorgramData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CSpectorgramData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CSpectorgramData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_CopasiPlot.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CopasiPlot.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Generating plotUI/moc_HistoWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_HistoWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating plotUI/moc_curve2dwidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_curve2dwidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating plotUI/moc_plotwindow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_plotwindow.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating plotUI/moc_scrollbar.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_scrollbar.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating plotUI/moc_scrollzoomer.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_scrollzoomer.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating tex/moc_CMathMLToTeX.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/tex && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex/moc_CMathMLToTeX.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/tex/CMathMLToTeX.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating tex/moc_CStructureParser.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/tex && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex/moc_CStructureParser.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/tex/CStructureParser.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_AboutDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_AboutDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CBrowseModelVersionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CBrowseModelVersionDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CColorScale.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CColorScale.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CColorScale.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CCopasiPlotSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CCopasiPlotSelectionDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CCopasiSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CCopasiSelectionDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CCopasiSelectionWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CCopasiSelectionWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CCreateModelVersionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CCreateModelVersionDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CEntityProvenanceDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CEntityProvenanceDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CLNAResultSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CLNAResultSubwidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 42%] Generating UI/moc_CLNAResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CLNAResultWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CMCAResultSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CMCAResultSubwidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CMCAResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CMCAResultWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CProgressBar.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CProgressBar.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CProvenanceDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CProvenanceDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQAnalyticsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQAnalyticsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQArrayAnnotationsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQArrayAnnotationsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQArrayAnnotationsWidgetDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQArrayAnnotationsWidgetDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQBaseDataModel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQBaseDataModel.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Building CXX object copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/example3.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example3 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example3/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example3/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example3 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example3.dir/example3.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example3/example3.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQBrowserPane.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQBrowserPane.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQBrowserPaneDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQBrowserPaneDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQCheckModelWindow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCheckModelWindow.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQComboDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQComboDelegate.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQCompartment.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartment.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQCompartmentCopyOptions.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartmentCopyOptions.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Generating UI/moc_CQCompartmentDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartmentDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQCompartmentsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartmentsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQCopasiApplication.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCopasiApplication.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQCrossSectionTaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCrossSectionTaskWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQDateTimeEditDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDateTimeEditDelegate.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQDependenciesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDependenciesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQDependencyDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDependencyDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQDependencyWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDependencyWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQDifferentialEquations.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDifferentialEquations.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEFMListWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMListWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEFMNetReactionDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMNetReactionDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEFMReactionDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMReactionDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEFMResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMResultWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEFMSpeciesDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMSpeciesDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEFMWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEventDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEventDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 44%] Generating UI/moc_CQEventWidget1.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEventWidget1.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQEventsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEventsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQExpandModelData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExpandModelData.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQExperimentData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExperimentData.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQExperimentSelection.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExperimentSelection.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQExpressionMmlStackedWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQExpressionWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExpressionWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFittingItemWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFittingItemWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFittingResult.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFittingResult.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFittingResultTab1.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFittingResultTab1.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFittingWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFittingWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFluxModeDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFluxModeDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFunctionDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFunctionDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQFunctionsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFunctionsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQGlobalQuantitiesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQGlobalQuantitiesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 45%] Generating UI/moc_CQGlobalQuantityDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQGlobalQuantityDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQLNAWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLNAWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQLayoutsDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLayoutsDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQLayoutsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLayoutsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQLyapResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLyapResultWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQLyapWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLyapWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMCAWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMCAWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMathMatrixWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMathMatrixWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMatrixDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMatrixDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMergingData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMergingData.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMessageBox.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMessageBox.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMmlScrollView.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMmlScrollView.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQModelValue.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQModelValue.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQModelWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQModelWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMoietiesTaskResult.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMoietiesTaskResult.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMoietiesTaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMoietiesTaskWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 46%] Generating UI/moc_CQMultipleSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMultipleSelectionDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQNameSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQNameSelectionDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQNotes.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQNotes.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQOptPopulation.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQOptPopulation.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQOptimizationResult.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQOptimizationResult.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQOptimizationWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQOptimizationWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQOscillationTaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQOscillationTaskWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterEstimationResult.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterEstimationResult.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterGroupDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterGroupDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterGroupView.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterGroupView.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterOverviewDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterOverviewDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterOverviewWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterOverviewWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterResultItemModel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterResultItemModel.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterResultItemModel.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterSetsDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterSetsDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQParameterSetsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterSetsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 47%] Generating UI/moc_CQPlotDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPlotDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQPlotsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPlotsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQPreferenceDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPreferenceDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQProgressDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQProgressItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressItem.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQProgressItemBar.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressItemBar.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQProgressItemText.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressItemText.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQPushButtonDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPushButtonDelegate.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReactionDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReactionDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReactionsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReactionsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReportDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReportDefinition.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportDefinition.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReportDefinitionSelect.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportDefinitionSelect.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReportListItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportListItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportListItem.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQReportsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 48%] Generating UI/moc_CQSBMLFileDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSBMLFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSBMLFileDialog.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSEDMLFileDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSEDMLFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSEDMLFileDialog.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQScrolledDependenciesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQScrolledDependenciesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSensResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSensResultWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSimpleSelectionTree.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSimpleSelectionTree.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSortFilterProxyModel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSortFilterProxyModel.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSortFilterProxyModel.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSpecieDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpecieDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSpeciesDetail.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpeciesDetail.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSpeciesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpeciesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSpinBoxDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpinBoxDelegate.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSplashWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSplashWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQStartValueReset.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQStartValueReset.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQSteadyStateResult.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSteadyStateResult.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQTSSAResultSubWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSAResultSubWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQTSSAResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSAResultWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQTSSATimeScaleWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSATimeScaleWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 49%] Generating UI/moc_CQTSSAWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSAWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTabWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTabWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTableView.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTableView.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTaskBtnWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskBtnWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTaskHeaderWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskHeaderWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTaskMethodWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskMethodWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTaskThread.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskThread.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTextDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTextDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQThread.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQThread.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Linking CXX executable example10 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example10 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example10.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example10.dir/example10.cpp.o -o example10 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTimeSeriesDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTimeSeriesDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 41%] Linking CXX executable example2 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example2.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example2.dir/example2.cpp.o -o example2 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTimeSeriesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTimeSeriesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Built target example2 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/build.make copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQTrajectoryWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTrajectoryWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQUndoHistoryDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUndoHistoryDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Built target example10 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build.make copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQUndoTester.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUndoTester.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQUnitDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUnitDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 50%] Generating UI/moc_CQUnitDetail.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUnitDetail.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CQUnitsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUnitsWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CQUpdateAvogadro.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUpdateAvogadro.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CQUpdatesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUpdatesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CQValidator.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQValidator.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQValidator.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example5 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/DependInfo.cmake --color= Scanning dependencies of target example5 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build.make copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CQValidatorUnit.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQValidatorUnit.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CScanContainerWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanContainerWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CScanItemData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanItemData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanItemData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CScanWidgetRandom.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetRandom.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 43%] Linking CXX executable example3 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example3.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example3.dir/example3.cpp.o -o example3 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example4 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example4 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/DependInfo.cmake --color= Scanning dependencies of target example4 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Built target example3 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/build.make copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/depend /usr/bin/make -f copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/build.make copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CScanWidgetRepeat.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetRepeat.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CScanWidgetScan.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetScan.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example6 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/DependInfo.cmake --color= Scanning dependencies of target example6 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/build.make copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CScanWidgetTask.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetTask.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CUpDownSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CUpDownSubwidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CWindowInterface.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CWindowInterface.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_ChemEqValidator.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ChemEqValidator.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ChemEqValidator.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CopasiFileDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CopasiFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CopasiFileDialog.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Generating UI/moc_CopasiGuiTypes.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CopasiGuiTypes.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CopasiGuiTypes.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_CopasiSlider.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CopasiSlider.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_DataModel.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_DataModel.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModel.txt.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_DataModelGUI.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_DataModelGUI.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_DefaultplotDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_DefaultplotDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_FunctionWidget1.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_FunctionWidget1.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_MyLineEdit.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_MyLineEdit.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_ObjectBrowserDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ObjectBrowserDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_ObjectBrowserItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ObjectBrowserItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ObjectBrowserItem.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_ObjectBrowserWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ObjectBrowserWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_ReactionsWidget1.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ReactionsWidget1.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_ScanWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ScanWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_SensWidgetComboBox.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SensWidgetComboBox.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_SensitivitiesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SensitivitiesWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_SliderDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SliderDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Building CXX object copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/example4.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example4 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example4/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example4/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example4 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example4.dir/example4.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example4/example4.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Building CXX object copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/example5.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example5 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example5.dir/example5.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 51%] Building CXX object copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/example6.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example6 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example6.dir/example6.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/example6.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp: In function 'int main()': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp:238:10: warning: unused variable 'bestValue' [-Wunused-variable] double bestValue = pOptProblem->getSolutionValue(); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp:243:10: warning: unused variable 'solution' [-Wunused-variable] double solution = pOptProblem->getSolutionVariables()[0]; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/example6.cpp: In function 'int main()': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/example6.cpp:276:15: warning: unused variable 'pFitMethod' [-Wunused-variable] COptMethod* pFitMethod = dynamic_cast(pFitTask->getMethod()); ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Generating UI/moc_SliderSettingsDialog.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SliderSettingsDialog.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_StateSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_StateSubwidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_SteadyStateWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SteadyStateWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_TaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_TaskWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_copasiWidget.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_copasiWidget.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_copasiui3window.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_copasiui3window.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_listviews.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_listviews.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_objectdebug.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_objectdebug.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_parametertable.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_parametertable.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating UI/moc_qtUtilities.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_qtUtilities.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/UI/qtUtilities.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating resourcesUI/moc_CQIconResource.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/resourcesUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/resourcesUI/moc_CQIconResource.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/resourcesUI/CQIconResource.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating wizard/moc_wizard.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard/moc_wizard.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating qlayout/moc_CQAnimationControls.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQAnimationControls.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating qlayout/moc_CQAnimationSettingsEditor.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQAnimationSettingsEditor.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating qlayout/moc_CQAnimationWindow.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQAnimationWindow.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating qlayout/moc_CQConnectionGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQConnectionGraphicsItem.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Generating qlayout/moc_CQCopasiAnimation.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQCopasiAnimation.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQCopasiAnimation.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQCopasiEffect.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQCopasiEffect.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQCopasiGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQCopasiGraphicsItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQCopasiGraphicsItem.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQEffectDescription.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQEffectDescription.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQEffectDescription.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQEffectDescriptionEdit.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQEffectDescriptionEdit.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQLabelGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQLabelGraphicsItem.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQLayoutScene.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQLayoutScene.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQLayoutView.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQLayoutView.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQRenderConverter.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQRenderConverter.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQRenderConverter.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQRoundedRect.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQRoundedRect.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQRoundedRect.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQStyledGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQStyledGraphicsItem.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating qlayout/moc_CQZoomableView.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQZoomableView.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating undoFramework/moc_CCopasiUndoCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CCopasiUndoCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CCopasiUndoCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating undoFramework/moc_ChangeNotesCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ChangeNotesCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ChangeNotesCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating undoFramework/moc_CompartmentChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CompartmentChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CompartmentChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 54%] Generating undoFramework/moc_CompartmentDataChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CompartmentDataChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CompartmentDataChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_CopasiUndoCommandTypes.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CopasiUndoCommandTypes.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CopasiUndoCommandTypes.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_CreateNewCompartmentCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewCompartmentCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewCompartmentCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_CreateNewEventCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewEventCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewEventCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_CreateNewGlobalQuantityCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewGlobalQuantityCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewGlobalQuantityCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_CreateNewReactionCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewReactionCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewReactionCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_CreateNewSpeciesCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewSpeciesCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewSpeciesCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_DeleteCompartmentCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteCompartmentCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteCompartmentCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_DeleteEventCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteEventCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteEventCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_DeleteGlobalQuantityCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteGlobalQuantityCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteGlobalQuantityCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_DeleteReactionCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteReactionCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteReactionCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_DeleteSpeciesCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteSpeciesCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteSpeciesCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_EntityRenameCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_EntityRenameCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/EntityRenameCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_EventChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_EventChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/EventChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_EventDataChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_EventDataChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/EventDataChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_GlobalQuantityChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_GlobalQuantityChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 55%] Generating undoFramework/moc_GlobalQuantityDataChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_GlobalQuantityDataChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityDataChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_InsertCompartmentRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertCompartmentRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertCompartmentRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_InsertEventRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertEventRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertEventRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_InsertGlobalQuantityRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertGlobalQuantityRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertGlobalQuantityRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_InsertReactionRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertReactionRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertReactionRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_InsertSpeciesRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertSpeciesRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertSpeciesRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_ModelChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ModelChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ModelChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_ParameterOverviewDataChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ParameterOverviewDataChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ParameterOverviewDataChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_ReactionChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ReactionChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ReactionChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_ReactionDataChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ReactionDataChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ReactionDataChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_RemoveAllCompartmentRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllCompartmentRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllCompartmentRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_RemoveAllEventRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllEventRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllEventRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_RemoveAllGlobalQuantityRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllGlobalQuantityRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_RemoveAllReactionRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllReactionRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllReactionRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_RemoveAllSpeciesRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllSpeciesRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllSpeciesRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 56%] Generating undoFramework/moc_RemoveCompartmentRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveCompartmentRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveCompartmentRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_RemoveEventRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveEventRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveEventRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_RemoveGlobalQuantityRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveGlobalQuantityRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveGlobalQuantityRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_RemoveReactionRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveReactionRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveReactionRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_RemoveSpeciesRowsCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveSpeciesRowsCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveSpeciesRowsCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_SpeciesChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_SpeciesDataChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesDataChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesDataChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_SpeciesInitialValueLostFocusCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesInitialValueLostFocusCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesInitialValueLostFocusCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_SpeciesTypeChangeCommand.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesTypeChangeCommand.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesTypeChangeCommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoCompartmentData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoCompartmentData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoCompartmentData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoData.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoDependentData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoDependentData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoDependentData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoEventAssignmentData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoEventAssignmentData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoEventAssignmentData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoEventData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoEventData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoEventData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoGlobalQuantityData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoGlobalQuantityData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoGlobalQuantityData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 57%] Generating undoFramework/moc_UndoReactionData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoReactionData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoReactionData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Generating undoFramework/moc_UndoSpeciesData.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoSpeciesData.cpp_parameters /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoSpeciesData.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Generating undoUI/moc_CQUndoDM.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI/moc_CQUndoDM.cpp_parameters make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 52%] Linking CXX executable example6 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example6 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example6.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example6.dir/example6.cpp.o -o example6 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Built target example6 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/build.make copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Linking CXX executable example4 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example4 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example4.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example4.dir/example4.cpp.o -o example4 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Built target example4 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/build.make copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example7 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/DependInfo.cmake --color= Scanning dependencies of target example7 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/build.make copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 53%] Linking CXX executable example5 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example5 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example5.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example5.dir/example5.cpp.o -o example5 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Built target example5 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/build.make copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example8 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example8 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/DependInfo.cmake --color= Scanning dependencies of target example8 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/build.make copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Building CXX object copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/example7.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example7 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/../../.. 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/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/example7.cpp:128:14: warning: unused variable 'pRateLaw' [-Wunused-variable] CFunction* pRateLaw = dynamic_cast(pFunDB->findFunction("My Rate Law")); ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/example7.cpp:135:8: warning: unused variable 'result' [-Wunused-variable] bool result = pFunction->setInfix(formula); ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example9 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example9 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/DependInfo.cmake --color= Scanning 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-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example9.dir/example9.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example9/example9.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 58%] Linking CXX executable example7 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example7 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example7.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example7.dir/example7.cpp.o -o example7 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/exportSedML -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/exportSedML.dir/exportSedML.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Linking CXX executable example9 cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example9.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example9.dir/example9.cpp.o -o example9 -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/printAffectedExperiments.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp:62:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] bool result = false; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/printFluxModes /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/DependInfo.cmake --color= Scanning dependencies of target printFluxModes make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/build.make copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Building CXX object copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/printFluxModes.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/printFluxModes && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/printFluxModes.dir/printFluxModes.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Linking CXX executable exportSedML cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/exportSedML && /usr/bin/cmake -E cmake_link_script CMakeFiles/exportSedML.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/exportSedML.dir/exportSedML.cpp.o -o exportSedML -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Built target exportSedML make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build.make copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renameActiveReport /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/DependInfo.cmake --color= Scanning dependencies of target renameActiveReport make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build.make copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Building CXX object copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renameActiveReport && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/renameActiveReport.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQCreatorDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Linking CXX executable printAffectedExperiments cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/printAffectedExperiments && /usr/bin/cmake -E cmake_link_script CMakeFiles/printAffectedExperiments.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/printAffectedExperiments.dir/main.cpp.o -o printAffectedExperiments -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Built target printAffectedExperiments make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build.make copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/runSedML /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/DependInfo.cmake --color= Scanning dependencies of target runSedML make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build.make copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Building CXX object copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/runSedML.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/runSedML && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/runSedML.dir/runSedML.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML/runSedML.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Linking CXX executable printFluxModes cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/printFluxModes && /usr/bin/cmake -E cmake_link_script CMakeFiles/printFluxModes.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/printFluxModes.dir/printFluxModes.cpp.o -o printFluxModes -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Built target printFluxModes make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_csharp_native_lib make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQMiriamWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 59%] Linking CXX executable renameActiveReport cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renameActiveReport && /usr/bin/cmake -E cmake_link_script CMakeFiles/renameActiveReport.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/renameActiveReport.dir/main.cpp.o -o renameActiveReport -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Built target renameActiveReport make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQModifiedDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Linking CXX executable runSedML cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/runSedML && /usr/bin/cmake -E cmake_link_script CMakeFiles/runSedML.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/runSedML.dir/runSedML.cpp.o -o runSedML -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQRDFTreeView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Built target runSedML make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQRDFTreeViewItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI/CQReferenceDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/CQBaseWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/CQBaseWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/CQBaseWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/qwt3dBars.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/qwt3dBars.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dBars.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/qwt3dColor.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/qwt3dColor.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dColor.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/qwt3dPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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/builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dPlot.cpp:176:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dPlot.cpp:177:58: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' mpPlot->coordinates()->axes[Qwt3D::Z4].setMajors(1); mpPlot->coordinates()->axes[Qwt3D::Z4].setMinors(0); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/qwt3dScale.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB 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/usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/qwt3dScale.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/barChart/qwt3dScale.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && 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-I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/BezierCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CArrow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CCompartmentGraphNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CDataEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Swig Perl source cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/../swig/ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/../../ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl -I/builddir/build/BUILD/COPASI-Build-184 -c++ -perl5 -DLIBSBML_CPP_NAMESPACE_USE -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSEDML_CPP_NAMESPACE_USE -DLIBSEDML_CPP_NAMESPACE_BEGIN -DLIBSEDML_CPP_NAMESPACE_END -DUSE_CLAPACK -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/perl.i cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl && /usr/bin/cmake -DSRC_DIR=/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl -DFILENAME="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/copasi_wrapper.cpp" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/patch-swig-file.cmake -- Patched copasi_wrapper.cpp cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/../common/patch-wrapper.cmake -- Patching C++ wrapper make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.h:85: Warning 371: operator&= ignored /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.h:150: Warning 372: operator|= ignored make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_perl_lib make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CGraphCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CGraphNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CLabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQAutolayoutWizard.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQAutolayoutWizard.cpp: In member function 'void CQSelectionWizardPage::fillTree(const CModel&)': /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQAutolayoutWizard.cpp:413:46: warning: enum constant in boolean context [-Wint-in-bool-context] pItem->setFlags(pItem->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQAutolayoutWizard.cpp:413:66: warning: suggest parentheses around operand of '!' or change '|' to '||' or '!' to '~' [-Wparentheses] pItem->setFlags(pItem->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQAutolayoutWizard.cpp:430:54: warning: enum constant in boolean context [-Wint-in-bool-context] pChild1->setFlags(pChild1->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQAutolayoutWizard.cpp:430:74: warning: suggest parentheses around operand of '!' or change '|' to '||' or '!' to '~' [-Wparentheses] pChild1->setFlags(pChild1->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQCurrentValueTable.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQCurrentValueTable.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQCurrentValueTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQFontRenderer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQFontRenderer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQFontRenderer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLLayoutPainter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLLayoutPainter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLLayoutPainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLLayoutViewer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLLayoutViewer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLLayoutViewer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLNetworkPainter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLNetworkPainter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp: In member function 'void CQGLNetworkPainter::rescaleDataSetsWithNewMinMax(double, double, double, double, CVisParameters::SCALING_MODE)': /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp:1802:13: warning: variable 'val' set but not used [-Wunused-but-set-variable] C_FLOAT64 val, val_new; ^~~ /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp: In member function 'void CQGLNetworkPainter::rescaleNode(std::__cxx11::string, double, double, CVisParameters::SCALING_MODE)': /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp:1870:13: warning: variable 'val' set but not used [-Wunused-but-set-variable] C_FLOAT64 val, val_new; ^~~ /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp: In member function 'void CQGLNetworkPainter::rescaleDataSets(CVisParameters::SCALING_MODE)': /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLNetworkPainter.cpp:1945:13: warning: variable 'val' set but not used [-Wunused-but-set-variable] C_FLOAT64 val, val_new; ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLViewport.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQGLViewport.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQGLViewport.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Swig Python source cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../swig/ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../../ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python -I/builddir/build/BUILD/COPASI-Build-184 -c++ -python -DLIBSBML_CPP_NAMESPACE_USE -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSEDML_CPP_NAMESPACE_USE -DLIBSEDML_CPP_NAMESPACE_BEGIN -DLIBSEDML_CPP_NAMESPACE_END -DUSE_CLAPACK -features autodoc,1 -o /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/python.i cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../common/patch-wrapper.cmake -- Patching C++ wrapper cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python" -DVERSION=4.23.184 -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutMainWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutMainWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQLayoutMainWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQLayoutThread.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQNewMainWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQNewMainWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQNewMainWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQPlayerControlWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQQtImageTexturizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQQtImageTexturizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQQtImageTexturizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQScreenshotOptionsDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQScreenshotOptionsDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQScreenshotOptionsDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CQSpringLayoutParameterWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CSimSummaryInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/CVisParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 60%] Building CXX object copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/copasi_wrapper.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -Dbinding_csharp_native_lib_EXPORTS -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp/../swig -I/builddir/build/BUILD/COPASI-Build-184/src -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/binding_csharp_native_lib.dir/copasi_wrapper.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/copasi_wrapper.cpp: In function 'unsigned int CSharp_orgfCOPASI_CCopasiTask_initializeRaw___(void*, int)': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/copasi_wrapper.cpp:53671:11: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] jresult = result; ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/copasi_wrapper.cpp: In function 'unsigned int CSharp_orgfCOPASI_CCopasiTask_processRaw___(void*, unsigned int)': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/copasi_wrapper.cpp:53699:11: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] jresult = result; ~~~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/FontChooser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG 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-I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/NodeSizePanel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/NodeSizePanel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/ParaPanel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/ParaPanel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/ParaPanel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Linking CXX shared library libcopasics.so cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_csharp_native_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -pthread -shared -Wl,-soname,libcopasics.so -o libcopasics.so CMakeFiles/binding_csharp_native_lib.dir/copasi_wrapper.cpp.o -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Built target binding_csharp_native_lib make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_lib.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_lib make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_lib.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/RGTextureSpec.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/RGTextureSpec.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI/RGTextureSpec.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQAnimationControls.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQAnimationSettingsEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQAnimationWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQConnectionGraphicsItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQCopasiAnimation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQCopasiEffect.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQCopasiGraphicsItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQEffectDescription.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQEffectDescriptionEdit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQLabelGraphicsItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQLayoutScene.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQLayoutView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQRenderConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQRoundedRect.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQStyledGraphicsItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/qlayout/CQZoomableView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/BandedGraphWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/C2DCurveData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/C2DPlotCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CBandedGraphData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CHistoCurveData.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CHistoCurveData.cpp: In member function 'virtual QwtDoubleRect CHistoCurveData::boundingRect() const': /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CHistoCurveData.cpp:147:13: warning: unused variable 'tmpFactor' [-Wunused-variable] C_FLOAT64 tmpFactor = 1.0 / (mSize * mIncrement); ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CLinearColorMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/COutputHandlerPlot.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CPlotSpectogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQPlotColors.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQPlotEditWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQPlotSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CQSpectogramWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CSpectorgramData.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CSpectorgramData.cpp: In member function 'virtual double CSpectorgramData::value(double, double) const': /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CSpectorgramData.cpp:347:12: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] if (xpos == mSizeX) --xpos; ~~~~~^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CSpectorgramData.cpp:349:12: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] if (ypos == mSizeY) --ypos; ~~~~~^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CopasiPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/CopasiPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/CopasiPlot.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/HistoWidget.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/HistoWidget.cpp: In member function 'virtual void HistoWidget::buttonPressedX()': /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/HistoWidget.cpp:79:66: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] while (!(pParent = dynamic_cast< CQPlotSubwidget * >(tmp)) && this) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/curve2dwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/plotwindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plotUI/scrollzoomer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tex/CMathMLToTeX.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/AboutDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CBrowseModelVersionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CBrowseModelVersionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CBrowseModelVersionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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'/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CCopasiPlotSelectionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CCopasiSelectionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CCopasiSelectionWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCreateModelVersionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CCreateModelVersionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CCreateModelVersionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CEntityProvenanceDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CEntityProvenanceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp: In member function 'void CEntityProvenanceDialog::ProvXMLFiles2ProvenanceTable()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp:1070:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 3, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp:965:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 4, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp:720:106: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 3, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp:614:106: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 4, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp:370:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 3, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CEntityProvenanceDialog.cpp:265:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 4, QModelIndex()); ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CLNAResultSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CLNAResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 62%] Building CXX object copasi/bindings/R/CMakeFiles/binding_r_lib.dir/copasi_wrapper.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -Dbinding_r_lib_EXPORTS -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../swig -I/builddir/build/BUILD/COPASI-Build-184/src -I/usr/include/R -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/binding_r_lib.dir/copasi_wrapper.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/copasi_wrapper.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/copasi_wrapper.cpp: In function 'SEXPREC* R_swig_CCopasiTask_initializeRaw(SEXP, SEXP, SEXP)': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/copasi_wrapper.cpp:108142:27: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] r_ans = Rf_ScalarLogical(result); ~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/copasi_wrapper.cpp: In function 'SEXPREC* R_swig_CCopasiTask_processRaw(SEXP, SEXP, SEXP)': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/copasi_wrapper.cpp:108206:27: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] r_ans = Rf_ScalarLogical(result); ~~~~~~~~~~~~~~~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/bindings/R/CMakeFiles/binding_r_lib.dir/RProcessCallback.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -Dbinding_r_lib_EXPORTS -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/../swig -I/builddir/build/BUILD/COPASI-Build-184/src -I/usr/include/R -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/binding_r_lib.dir/RProcessCallback.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/RProcessCallback.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CMCAResultSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CMCAResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProgressBar.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/COPASI.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -Dbinding_perl_lib_EXPORTS -I/usr/lib64/perl5/CORE -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl/../swig -I/builddir/build/BUILD/COPASI-Build-184/src -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/binding_perl_lib.dir/COPASI.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/COPASI.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' In file included from /usr/lib64/perl5/CORE/perl.h:3913, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/copasi_wrapper.cpp:766, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/COPASI.cpp:9: /usr/lib64/perl5/CORE/sv.h: In function 'void _wrap_CCopasiTask_initializeRaw(PerlInterpreter*, CV*)': /usr/lib64/perl5/CORE/sv.h:2105:24: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] #define boolSV(b) ((b) ? &PL_sv_yes : &PL_sv_no) ^ In file included from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/COPASI.cpp:9: /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/copasi_wrapper.cpp:5303:14: note: 'success' was declared here bool success; ^~~~~~~ In file included from /usr/lib64/perl5/CORE/perl.h:3913, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/copasi_wrapper.cpp:766, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/COPASI.cpp:9: /usr/lib64/perl5/CORE/sv.h: In function 'void _wrap_CCopasiTask_processRaw(PerlInterpreter*, CV*)': /usr/lib64/perl5/CORE/sv.h:2105:24: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] #define boolSV(b) ((b) ? &PL_sv_yes : &PL_sv_no) ^ In file included from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/COPASI.cpp:9: /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/copasi_wrapper.cpp:5349:14: note: 'success' was declared here bool success; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CProvenanceDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CProvenanceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp: In member function 'void CProvenanceDialog::ProvXMLFiles2ProvenanceTable()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:1254:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 5, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:1150:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 6, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:1056:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 1, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:895:106: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 5, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:789:106: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 6, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:694:106: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 1, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:534:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 5, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:430:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 6, QModelIndex()); ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CProvenanceDialog.cpp:336:102: warning: 'TableRow' may be used uninitialized in this function [-Wmaybe-uninitialized] QModelIndex index = mpProvenanceTable->index(TableRow, 1, QModelIndex()); ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQAnalyticsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQArrayAnnotationsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQArrayAnnotationsWidgetDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQBaseDataModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQBrowserPane.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQBrowserPaneDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCheckModelWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQComboDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 61%] Building CXX object copasi/bindings/python/CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -Dbinding_python_lib_EXPORTS -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../swig -I/builddir/build/BUILD/COPASI-Build-184/src -I/usr/include/python2.7 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CPlotDataChannelSpec; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CPlotDataChannelSpec; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CPlotDataChannelSpec]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CPlotDataChannelSpec; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CPlotDataChannelSpec; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:91441:34: required from here /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CPlotDataChannelSpec' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/bindings/common/downcast_common.cpp:17, from /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/local.cpp:21, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:4223: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/plot/CPlotItem.h:38:7: note: 'class CPlotDataChannelSpec' declared here class CPlotDataChannelSpec : public CRegisteredCommonName ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CRegisteredCommonName; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CRegisteredCommonName; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CRegisteredCommonName]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CRegisteredCommonName; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CRegisteredCommonName; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:107109:34: required from here /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CRegisteredCommonName' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObjectReference.h:23, from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataContainer.h:227, from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.h:13, from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/bindings/common/local_common.cpp:12, from /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/local.cpp:20, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:4223: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CRegisteredCommonName.h:11:7: note: 'class CRegisteredCommonName' declared here class CRegisteredCommonName: public CCommonName ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector >]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont > >; Seq = std::vector > >]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector > >; T = std::vector >; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector > >]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = std::vector >; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector > >; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:124908:34: required from here /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector >' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:3032: /usr/include/c++/8/bits/stl_vector.h:339:11: note: 'class std::vector >' declared here class vector : protected _Vector_base<_Tp, _Alloc> ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CLPoint; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CLPoint; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CLPoint]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CLPoint; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CLPoint; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:132400:34: required from here /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CLPoint' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:7380: /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLBase.h:56:7: note: 'class CLPoint' declared here class CLPoint : public CLBase ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CLLineSegment; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CLLineSegment; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CLLineSegment]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CLLineSegment; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CLLineSegment; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:134270:34: required from here /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CLLineSegment' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:7381: /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLCurve.h:41:7: note: 'class CLLineSegment' declared here class CLLineSegment : public CLBase ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CFluxMode; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CFluxMode; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CFluxMode]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CFluxMode; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CFluxMode; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:227677:34: required from here /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CFluxMode' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:7379: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/elementaryFluxModes/CFluxMode.h:40:7: note: 'class CFluxMode' declared here class CFluxMode ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In function 'PyObject* _wrap_CCopasiTask_initializeRaw(PyObject*, PyObject*)': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:4675:25: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] return PyBool_FromLong(value ? 1 : 0); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:11347:14: note: 'success' was declared here bool success; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp: In function 'PyObject* _wrap_CCopasiTask_processRaw(PyObject*, PyObject*)': /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:4675:25: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] return PyBool_FromLong(value ? 1 : 0); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/copasi_wrapper.cpp:11393:14: note: 'success' was declared here bool success; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 65%] Linking CXX shared library COPASI.so cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -pthread -shared -Wl,-soname,COPASI.so -o COPASI.so CMakeFiles/binding_r_lib.dir/copasi_wrapper.cpp.o CMakeFiles/binding_r_lib.dir/RProcessCallback.cpp.o -L/builddir/build/BUILD/COPASI-Build-184/build/copasi -L/usr/lib64/R/lib ../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lR -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Linking CXX shared module COPASI.so cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o COPASI.so CMakeFiles/binding_perl_lib.dir/COPASI.cpp.o -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lperl -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Built target binding_r_lib make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/depend make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentCopyOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSE/CMakeFiles/CopasiSE.dir/DependInfo.cmake --color= Scanning dependencies of target CopasiSE make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSBW /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSBW /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/DependInfo.cmake --color= Scanning dependencies of target CopasiSBW make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Linking CXX shared library _COPASI.so cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -pthread -shared -Wl,-soname,_COPASI.so -o _COPASI.so CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lpython2.7 -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_package.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_package make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_package.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CopasiSE/CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSE && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp:41: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = bool]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = int]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = copasi::SBMLSchema_enum]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp: In function 'int exportSBML()': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp:643:27: warning: 'SBMLSchema' may be used uninitialized in this function [-Wmaybe-uninitialized] copasi::SBMLSchema_enum SBMLSchema; ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentDM.cpp: In member function 'virtual bool CQCompartmentDM::setData(const QModelIndex&, const QVariant&, int)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentDM.cpp:289:27: warning: unused variable 'pExpression' [-Wunused-variable] const CExpression * pExpression = NULL; ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSBW && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_USE_TEXTBROWSER=1 -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -I/builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSBW -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSBW/SBWTranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSBW/SBWTranslator.cpp:28: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCompartmentsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCopasiApplication.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQCrossSectionTaskWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDateTimeEditDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependenciesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Linking CXX executable CopasiSE cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSE && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSE.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -o CopasiSE -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Built target CopasiSE make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Linking CXX executable CopasiSBW cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSBW && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSBW.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -o CopasiSBW -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lSBW -lpthread -lz -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Built target CopasiSBW make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyWidget.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyWidget.cpp: In function 'QString getNameForType(CDependencyType)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyWidget.cpp:45:10: warning: enumeration value 'ALL_DEPENDENCIES' not handled in switch [-Wswitch] switch (type) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDependencyWidget.cpp:45:10: warning: enumeration value 'UNKNOWN' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMListWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMNetReactionDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMReactionDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQDifferentialEquations.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMSpeciesDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEFMWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEventDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEventsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExpandModelData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQEventWidget1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentSelection.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentData.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentData.cpp: In member function 'void CQExperimentData::slotFileEdit()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentData.cpp:621:10: warning: unused variable 'i' [-Wunused-variable] size_t i = mpExperimentSetCopy->getExperimentCount() - 1; ^ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentData.cpp: In member function 'bool CQExperimentData::saveTable(CExperiment*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExperimentData.cpp:1520:8: warning: variable 'FoundTime' set but not used [-Wunused-but-set-variable] bool FoundTime = false; ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExpressionMmlStackedWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQExpressionWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp: In member function 'void CQFittingResult::loadExperimentSetIntoTree(const CExperimentSet&, QTreeWidget*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp:137:20: warning: variable 'pItem' set but not used [-Wunused-but-set-variable] QTreeWidgetItem* pItem = NULL; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp: In member function 'virtual bool CQFittingResult::enterProtected()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp:264:32: warning: unused variable 'Solutions' [-Wunused-variable] const CVector< C_FLOAT64 > & Solutions = mpProblem->getSolutionVariables(); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp:265:32: warning: unused variable 'StdDeviations' [-Wunused-variable] const CVector< C_FLOAT64 > & StdDeviations = mpProblem->getVariableStdDeviations(); ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp:266:32: warning: unused variable 'Gradients' [-Wunused-variable] const CVector< C_FLOAT64 > & Gradients = mpProblem->getVariableGradients(); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp: In member function 'void CQFittingResult::loadLog(const COptMethod*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp:503:28: warning: unused variable 'subTextItem' [-Wunused-variable] QTreeWidgetItem* subTextItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getSubtext())); ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResult.cpp:508:28: warning: unused variable 'statusDetailItem' [-Wunused-variable] QTreeWidgetItem* statusDetailItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getStatusDetails())); ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingResultTab1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingItemWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFluxModeDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingWidget.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingWidget.cpp: In member function 'virtual bool CQFittingWidget::taskFinishedEvent()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFittingWidget.cpp:312:8: warning: unused variable 'result' [-Wunused-variable] bool result = TaskWidget::taskFinishedEvent(); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFunctionDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQFunctionsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQGlobalQuantitiesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLNAWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQGlobalQuantityDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLayoutsDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLyapResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLyapWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQLayoutsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMCAWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMatrixDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMathMatrixWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMessageBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMergingData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMmlScrollView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.cpp:20: /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.h: In constructor 'CQModelValue::CQModelValue(QWidget*, const char*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.h:68:15: warning: 'CQModelValue::mKeyToCopy' will be initialized after [-Wreorder] std::string mKeyToCopy; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.h:60:17: warning: 'CModelValue* CQModelValue::mpModelValue' [-Wreorder] CModelValue * mpModelValue; ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelValue.cpp:58:1: warning: when initialized here [-Wreorder] CQModelValue::CQModelValue(QWidget* parent, const char* name) ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMoietiesTaskResult.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQModelWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQMoietiesTaskWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o cd 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQNotes.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationResult.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationResult.cpp: In member function 'void CQOptimizationResult::loadLog(const COptMethod*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationResult.cpp:178:28: warning: unused variable 'subTextItem' [-Wunused-variable] QTreeWidgetItem* subTextItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getSubtext())); ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationResult.cpp:183:28: warning: unused variable 'statusDetailItem' [-Wunused-variable] QTreeWidgetItem* statusDetailItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getStatusDetails())); ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptPopulation.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptPopulation.cpp: In member function 'virtual void CQOptPopulation::update()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptPopulation.cpp:429:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (i == min_index) ~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptPopulation.cpp:453:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (i == min_index) ~~^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOscillationTaskWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQOptimizationWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterGroupDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterGroupView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterEstimationResult.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterEstimationResult.cpp: In member function 'void CQParameterEstimationResult::applyToModelState()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterEstimationResult.cpp:302:15: warning: unused variable 'current' [-Wunused-variable] int current = model->rowCount(); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterOverviewDM.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterOverviewDM.cpp: In member function 'bool CQParameterOverviewDM::parameterOverviewDataChange(const string&, const QVariant&, const string&, int)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterOverviewDM.cpp:605:8: warning: variable 'success' set but not used [-Wunused-but-set-variable] bool success = false; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterResultItemModel.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterResultItemModel.cpp: In member function 'virtual QVariant CQParameterResultItemModel::headerData(int, Qt::Orientation, int) const': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterResultItemModel.cpp:180:11: warning: variable 'initial' set but not used [-Wunused-but-set-variable] QSize initial = QAbstractTableModel::headerData(section, orientation, role).toSize(); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterSetsDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQParameterSetsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPlotDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB 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/usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPlotsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPreferenceDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressItemBar.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQProgressItemText.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPushButtonDelegate.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPushButtonDelegate.cpp: In member function 'virtual QWidget* CQPushButtonDelegate::createEditor(QWidget*, const QStyleOptionViewItem&, const QModelIndex&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQPushButtonDelegate.cpp:98:10: warning: 'pEditor' may be used uninitialized in this function [-Wmaybe-uninitialized] return pEditor; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReactionDM.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReactionDM.cpp: In member function 'bool CQReactionDM::reactionDataChange(const string&, const QVariant&, int, QString&, std::vector >&)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReactionDM.cpp:371:8: warning: variable 'refreshAll' set but not used [-Wunused-but-set-variable] bool refreshAll = false; ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReactionsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportDefinitionSelect.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportListItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSBMLFileDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQReportsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSEDMLFileDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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'/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQScrolledDependenciesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSensResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSortFilterProxyModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSimpleSelectionTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSpecieDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSpinBoxDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSpeciesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQStartValueReset.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSplashWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQSteadyStateResult.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTSSAResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTSSAResultSubWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTSSATimeScaleWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTableView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTSSAWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskBtnWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTabWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskHeaderWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI 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-fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskMethodWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTaskThread.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTextDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQThread.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL 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make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUndoHistoryDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQUndoHistoryDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoHistoryDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQTrajectoryWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp: In member function 'void CQUndoTester::testEventDM(int)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp:665:15: warning: unused variable 'pEvent' [-Wunused-variable] CEvent* pEvent = &mpDmWidgetEvents->getDataModel()->getModel()->getEvents()[currentRow]; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp: In member function 'void CQUndoTester::testReactionDM(int)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp:764:20: warning: unused variable 'pReact' [-Wunused-variable] CReaction* pReact = &pModel->getReactions()[currentRow]; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp:783:20: warning: unused variable 'pReact' [-Wunused-variable] CReaction* pReact = &pModel->getReactions()[currentRow]; ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/UI/CopasiGuiTypes.h:157, from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQUndoTester.cpp:13: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/UI/DataModel.txt.h: At global scope: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/UI/DataModel.txt.h:15:13: warning: 'DataModeltxt' defined but not used [-Wunused-variable] static char DataModeltxt[] = ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CQValidatorUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanItemData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanContainerWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetRepeat.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetRandom.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetScan.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CUpDownSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CScanWidgetTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CWindowInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CopasiSlider.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CopasiFileDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/CopasiFileDialog.cpp:28: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DefaultplotDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/MyLineEdit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi 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CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ObjectBrowserDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/FunctionWidget1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.cpp:24: /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.h: In constructor 'DataModelGUI::DataModelGUI(QObject*, CDataModel*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.h:155:24: warning: 'DataModelGUI::mpOutputHandlerPlot' will be initialized after [-Wreorder] COutputHandlerPlot * mpOutputHandlerPlot; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.h:154:16: warning: 'CDataModel* DataModelGUI::mpDataModel' [-Wreorder] CDataModel * mpDataModel; ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.cpp:88:1: warning: when initialized here [-Wreorder] DataModelGUI::DataModelGUI(QObject * parent, CDataModel * pDataModel): ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.cpp:25: /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModel.txt.h: At global scope: /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModel.txt.h:15:13: warning: 'DataModeltxt' defined but not used [-Wunused-variable] static char DataModeltxt[] = ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/DataModelGUI.cpp:84: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ObjectBrowserItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ObjectBrowserWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL 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[ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/ReactionsWidget1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SensitivitiesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SliderSettingsDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SliderDialog.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SliderDialog.cpp: In member function 'std::vector* SliderDialog::getCSlidersForObject(CDataObject*, std::vector*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SliderDialog.cpp:1075:8: warning: variable 'issueWarning' set but not used [-Wunused-but-set-variable] bool issueWarning = false; ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.cpp:20: /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.h: In constructor 'StateSubwidget::StateSubwidget(QWidget*, const char*)': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.h:42:12: warning: 'StateSubwidget::mpModel' will be initialized after [-Wreorder] CModel * mpModel; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.h:41:28: warning: 'const CSteadyStateTask* StateSubwidget::mpTask' [-Wreorder] const CSteadyStateTask * mpTask; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/StateSubwidget.cpp:46:1: warning: when initialized here [-Wreorder] StateSubwidget::StateSubwidget(QWidget* parent, const char* name) ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/SteadyStateWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/TaskWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/qtUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/parametertable.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.cpp:55: /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.h: In constructor 'CopasiUI3Window::CopasiUI3Window()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.h:555:8: warning: 'CopasiUI3Window::mSBWIgnoreShutdownEvent' will be initialized after [-Wreorder] bool mSBWIgnoreShutdownEvent; ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.h:386:11: warning: 'QMenu* CopasiUI3Window::mpMenuSEDMLSupport' [-Wreorder] QMenu * mpMenuSEDMLSupport; ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.cpp:181:1: warning: when initialized here [-Wreorder] CopasiUI3Window::CopasiUI3Window(): ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.cpp: In member function 'void CopasiUI3Window::slotUpdateMIRIAM()': /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.cpp:2454:8: warning: variable 'success' set but not used [-Wunused-but-set-variable] bool success = true; ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/UI/copasiui3window.cpp:76: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const bool]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/resourcesUI/CQIconResource.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CCopasiUndoCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CCopasiUndoCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CCopasiUndoCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/ChangeNotesCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/ChangeNotesCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ChangeNotesCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CompartmentChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CompartmentChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CompartmentChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CompartmentDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CompartmentDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CompartmentDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewCompartmentCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewCompartmentCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewCompartmentCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewGlobalQuantityCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewGlobalQuantityCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewGlobalQuantityCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewEventCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewEventCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewEventCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewReactionCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewReactionCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewReactionCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteCompartmentCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteCompartmentCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteCompartmentCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewSpeciesCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/CreateNewSpeciesCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/CreateNewSpeciesCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteEventCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteEventCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteEventCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteGlobalQuantityCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteGlobalQuantityCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteGlobalQuantityCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteReactionCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteReactionCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteReactionCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteSpeciesCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/DeleteSpeciesCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/DeleteSpeciesCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/EntityRenameCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/EntityRenameCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/EventChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/EventChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/EventChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/EventDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/EventDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/EventDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/GlobalQuantityChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/GlobalQuantityChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.cpp:11: /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.h: In constructor 'GlobalQuantityChangeCommand::GlobalQuantityChangeCommand(CCopasiUndoCommand::Type, const QVariant&, const QVariant&, CDataObject*, CQModelValue*, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.h:41:17: warning: 'GlobalQuantityChangeCommand::mpWidget' will be initialized after [-Wreorder] CQModelValue* mpWidget; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.h:39:10: warning: 'double GlobalQuantityChangeCommand::mIValue' [-Wreorder] double mIValue; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityChangeCommand.cpp:26:1: warning: when initialized here [-Wreorder] GlobalQuantityChangeCommand::GlobalQuantityChangeCommand(CCopasiUndoCommand::Type type, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/GlobalQuantityDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/GlobalQuantityDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp: In member function 'virtual void GlobalQuantityDataChangeCommand::redo()': /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/GlobalQuantityDataChangeCommand.cpp:93:42: warning: operation on 'pModelValue' may be undefined [-Wsequence-point] CModelValue *pModelValue = pModelValue = &pModel->getModelValues()[mIndex.row()]; make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/InsertCompartmentRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/InsertCompartmentRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertCompartmentRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/InsertEventRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/InsertEventRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertEventRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/InsertGlobalQuantityRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/InsertGlobalQuantityRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertGlobalQuantityRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/InsertReactionRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/InsertReactionRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/InsertReactionRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/InsertSpeciesRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/ParameterOverviewDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/ParameterOverviewDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ParameterOverviewDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/ReactionDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/ReactionDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ReactionDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/ReactionChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/ReactionChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/ReactionChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllCompartmentRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllCompartmentRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllCompartmentRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllEventRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllEventRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllEventRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllGlobalQuantityRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllReactionRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllReactionRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllReactionRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllSpeciesRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveAllSpeciesRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveAllSpeciesRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveCompartmentRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveCompartmentRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveCompartmentRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveEventRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveEventRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveEventRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveGlobalQuantityRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveGlobalQuantityRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveGlobalQuantityRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveReactionRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveReactionRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveReactionRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveSpeciesRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/RemoveSpeciesRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/RemoveSpeciesRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesChangeCommand.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesChangeCommand.cpp:9: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/undoFramework/SpeciesChangeCommand.h: In constructor 'SpeciesChangeCommand::SpeciesChangeCommand(CCopasiUndoCommand::Type, const QVariant&, const QVariant&, CDataObject*, CQSpeciesDetail*, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/undoFramework/SpeciesChangeCommand.h:36:20: warning: 'SpeciesChangeCommand::mpWidget' will be initialized after [-Wreorder] CQSpeciesDetail* mpWidget; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/undoFramework/SpeciesChangeCommand.h:34:10: warning: 'double SpeciesChangeCommand::mIValue' [-Wreorder] double mIValue; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesChangeCommand.cpp:13:1: warning: when initialized here [-Wreorder] SpeciesChangeCommand::SpeciesChangeCommand(CCopasiUndoCommand::Type type, ^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesDataChangeCommand.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesDataChangeCommand.cpp: In constructor 'SpecieDataChangeCommand::SpecieDataChangeCommand(const CMetab*, const QVariant&, const QVariant&, int, CQSpecieDM*)': /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesDataChangeCommand.cpp:44:12: warning: unused variable 'pModel' [-Wunused-variable] CModel * pModel = pMetab->getModel(); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesInitialValueLostFocusCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesInitialValueLostFocusCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesInitialValueLostFocusCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesTypeChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/SpeciesTypeChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/SpeciesTypeChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoCompartmentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoCompartmentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoCompartmentData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoEventAssignmentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoEventAssignmentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoEventAssignmentData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoDependentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoDependentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoDependentData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoEventData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoEventData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoEventData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoGlobalQuantityData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoGlobalQuantityData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoGlobalQuantityData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoSpeciesData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoSpeciesData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoSpeciesData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/UndoReactionData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/UndoReactionData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework/UndoReactionData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/qrc_copasi.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp: In member function 'QVariant CQUndoDM::displayData(const QModelIndex&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp:83:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (mpUndoStack->size() <= index.row() || ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp:91:28: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] return index.row() <= mpUndoStack->currentIndex() ? QVariant("Undo") : QVariant("Redo"); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp:88:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (static_cast< ColumnType >(index.column())) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp: In member function 'virtual QVariant CQUndoDM::headerData(int, Qt::Orientation, int) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDM.cpp:191:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (static_cast< ColumnType >(section)) ^ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dBars.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dBars.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dBars.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dColor.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dColor.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dColor.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undoUI/CQUndoDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dScale.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dScale.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dScale.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_BezierCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CArrow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CCompartmentGraphNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CDataEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CGraphCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CGraphNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CLabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_CQBaseWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/moc_CQBaseWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_CQBaseWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/barChart/moc_qwt3dPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart/moc_qwt3dPlot.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQFontRenderer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQFontRenderer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQFontRenderer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQCurrentValueTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQGLLayoutPainter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQGLLayoutViewer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQGLLayoutViewer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQGLViewport.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH 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/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQGLViewport.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutMainWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutMainWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQLayoutMainWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQQtImageTexturizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQQtImageTexturizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQGLNetworkPainter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_CQPlayerControlWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_FontChooser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_FontChooser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_RGTextureSpec.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_ParaPanel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_ParaPanel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_ParaPanel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_NodeSizePanel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_NodeSizePanel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI/moc_NodeSizePanel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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-I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQCreatorDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQModifiedDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI/moc_CQReferenceDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_C2DCurveData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CBandedGraphData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CHistoCurveData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CLinearColorMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CPlotSpectogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQPlotColors.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_BandedGraphWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CSpectorgramData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQSpectogramWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CQPlotSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CopasiPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CopasiPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_CopasiPlot.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_HistoWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_curve2dwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/tex/moc_CMathMLToTeX.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/tex/moc_CStructureParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_scrollbar.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI/moc_scrollzoomer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_AboutDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CBrowseModelVersionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CBrowseModelVersionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CBrowseModelVersionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CCopasiPlotSelectionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CEntityProvenanceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CEntityProvenanceDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CLNAResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CLNAResultSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CMCAResultSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CProgressBar.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CProvenanceDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CProvenanceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CProvenanceDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQAnalyticsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQArrayAnnotationsWidgetDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQArrayAnnotationsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQBaseDataModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQBrowserPane.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQBrowserPaneDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCheckModelWindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o cd 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CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQComboDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartmentCopyOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartmentDM.cpp make[2]: Leaving directory 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCopasiApplication.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCompartmentsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQCrossSectionTaskWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDateTimeEditDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDependenciesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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-I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMListWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQDifferentialEquations.cpp make[2]: Leaving directory 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEFMSpeciesDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEventDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEventWidget1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQEventsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExpandModelData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExperimentSelection.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQExperimentData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml 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-DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI 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-I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQFunctionsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQGlobalQuantitiesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQGlobalQuantityDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLNAWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLayoutsDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQLayoutsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMCAWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMergingData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMessageBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o cd 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQModelWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQMultipleSelectionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQNameSelectionDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQOptPopulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQNotes.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQOptimizationWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterEstimationResult.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterGroupDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterResultItemModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterOverviewDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterOverviewWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQParameterSetsDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPlotsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o cd 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CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPreferenceDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressItemBar.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQProgressItemText.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQPushButtonDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReactionDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReactionsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportListItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportDefinitionSelect.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSBMLFileDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSEDMLFileDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQReportsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSimpleSelectionTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQScrolledDependenciesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSortFilterProxyModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSensResultWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpecieDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpeciesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpeciesDetail.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSpinBoxDelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o cd 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CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQStartValueReset.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSplashWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSAResultWidget.cpp make[2]: Leaving directory 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQSteadyStateResult.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSATimeScaleWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTSSAWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTabWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTableView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskBtnWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskHeaderWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskThread.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTaskMethodWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTextDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQTimeSeriesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoHistoryDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUnitsWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUnitDM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQUpdatesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory 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-I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanItemData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 67%] Create R Package cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.R" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/patch-swig-file.cmake -- Patched COPASI.R cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.so /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI/inst/libs cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.R /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI/R cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/create-r-package.cmake -- Created package: /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI_4.23.184_R_powerpc64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CQValidatorUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanContainerWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetRandom.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetScan.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ChemEqValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CopasiFileDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CScanWidgetTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_DataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_DataModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CWindowInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_CUpDownSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_DataModelGUI.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_DefaultplotDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ObjectBrowserItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_FunctionWidget1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_MyLineEdit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ObjectBrowserWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_ScanWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SensitivitiesWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SliderSettingsDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_StateSubwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_TaskWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_SteadyStateWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_copasiWidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_copasiui3window.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_listviews.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/UI/moc_qtUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/resourcesUI/moc_CQIconResource.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQAnimationControls.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH 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-DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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'/builddir/build/BUILD/COPASI-Build-184/build' [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQConnectionGraphicsItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQRenderConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH 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-DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_CreateNewGlobalQuantityCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewGlobalQuantityCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB 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copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_CreateNewReactionCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_CreateNewReactionCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewReactionCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_CreateNewSpeciesCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_CreateNewSpeciesCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_CreateNewSpeciesCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteCompartmentCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI 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/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteCompartmentCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteGlobalQuantityCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas 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/usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteEventCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteEventCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteReactionCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteReactionCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteReactionCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteSpeciesCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_DeleteSpeciesCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_DeleteSpeciesCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_EntityRenameCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_EntityRenameCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_EntityRenameCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_EventChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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/usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_EventChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_EventChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_EventDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI 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-I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_EventDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_EventDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_GlobalQuantityChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_GlobalQuantityChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_GlobalQuantityChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_GlobalQuantityDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_GlobalQuantityDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_GlobalQuantityDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQStyledGraphicsItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertCompartmentRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertGlobalQuantityRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertGlobalQuantityRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertGlobalQuantityRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertEventRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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/usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertEventRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertEventRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertReactionRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertReactionRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_InsertReactionRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout/moc_CQZoomableView.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_InsertSpeciesRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_ReactionChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ReactionChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_ReactionDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_ReactionDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_ReactionDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllCompartmentRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllCompartmentRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllCompartmentRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllEventRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex 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/usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllEventRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllEventRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllGlobalQuantityRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllGlobalQuantityRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllGlobalQuantityRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllSpeciesRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllSpeciesRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllSpeciesRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllReactionRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI 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-DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveAllReactionRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveAllReactionRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveCompartmentRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveCompartmentRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveCompartmentRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveEventRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveEventRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveEventRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveGlobalQuantityRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveGlobalQuantityRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveGlobalQuantityRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveReactionRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveReactionRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveReactionRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveSpeciesRowsCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_RemoveSpeciesRowsCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_RemoveSpeciesRowsCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesDataChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesDataChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesDataChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesTypeChangeCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesTypeChangeCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesTypeChangeCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesInitialValueLostFocusCommand.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesInitialValueLostFocusCommand.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_SpeciesInitialValueLostFocusCommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoCompartmentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI 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-I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoEventAssignmentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoEventAssignmentData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoEventData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoGlobalQuantityData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoGlobalQuantityData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoGlobalQuantityData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoReactionData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI 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'/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoSpeciesData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoSpeciesData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoSpeciesData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI 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/usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework/moc_UndoData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI 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-isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI/moc_CQUndoDialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/usr/include/qt5/libmml-qt5 -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/usr/include/qt5/qwt -I/usr/include/qt5/qwtplot3d-qt5 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesDataChangeCommand.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesInitialValueLostFocusCommand.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_SpeciesTypeChangeCommand.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoCompartmentData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoDependentData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoEventAssignmentData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoEventData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoGlobalQuantityData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoReactionData.cpp.o CMakeFiles/libCOPASIUI.dir/undoFramework/moc_UndoSpeciesData.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o /usr/bin/ranlib libCOPASIUI.a make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target libCOPASIUI make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/renderLayout/CMakeFiles/renderLayout.dir/build.make copasi/bindings/cpp_examples/renderLayout/CMakeFiles/renderLayout.dir/depend /usr/bin/make -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI/CMakeFiles/CopasiUI.dir/DependInfo.cmake --color= Scanning dependencies of target CopasiUI make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renderLayout /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renderLayout /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renderLayout/CMakeFiles/renderLayout.dir/DependInfo.cmake --color= Scanning dependencies of target renderLayout make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/renderLayout/CMakeFiles/renderLayout.dir/build.make copasi/bindings/cpp_examples/renderLayout/CMakeFiles/renderLayout.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/CopasiUI/CMakeFiles/CopasiUI.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_USE_TEXTBROWSER=1 -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwtplot3d-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI/.. -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/copasi/tex -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/copasi/UI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI/../UI -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/CopasiUI.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI/main.cpp:40: /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI/../commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const bool]': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI/../commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Building CXX object copasi/bindings/cpp_examples/renderLayout/CMakeFiles/renderLayout.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renderLayout && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SBW_INTEGRATION -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DHAVE_MML -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwtplot3d-qt5 -I/usr/include/qt5/qwt -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/build -I/builddir/build/BUILD/COPASI-Build-184/build/copasi -I/builddir/build/BUILD/COPASI-Build-184/build/copasi/UI -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/renderLayout.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renderLayout/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/UI/CopasiGuiTypes.h:157, from /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renderLayout/main.cpp:20: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/UI/DataModel.txt.h:15:13: warning: 'DataModeltxt' defined but not used [-Wunused-variable] static char DataModeltxt[] = ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Linking CXX executable renderLayout cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/renderLayout && /usr/bin/cmake -E cmake_link_script CMakeFiles/renderLayout.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/renderLayout.dir/main.cpp.o -o renderLayout -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../../../libCOPASIUI.a ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat /usr/lib64/libQt5Concurrent.so.5.11.0 /usr/lib64/libQt5Network.so.5.11.0 /usr/lib64/libQt5OpenGL.so.5.11.0 /usr/lib64/libQt5PrintSupport.so.5.11.0 /usr/lib64/libQt5Svg.so.5.11.0 /usr/lib64/libQt5Widgets.so.5.11.0 /usr/lib64/libQt5Gui.so.5.11.0 /usr/lib64/libQt5Xml.so.5.11.0 /usr/lib64/libQt5Core.so.5.11.0 -lqwt-qt5 -lqwtplot3d-qt5 -lmml -lGL -lGLU -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target renderLayout make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Linking CXX executable CopasiUI cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiUI.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/CopasiUI.dir/main.cpp.o -o CopasiUI -L/builddir/build/BUILD/COPASI-Build-184/build/copasi ../libCOPASISE.a ../libCOPASIUI.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lSBW -lqwt-qt5 -lqwtplot3d-qt5 -lmml -lGL -lGLU /usr/lib64/libQt5Concurrent.so.5.11.0 /usr/lib64/libQt5Network.so.5.11.0 /usr/lib64/libQt5OpenGL.so.5.11.0 /usr/lib64/libQt5PrintSupport.so.5.11.0 /usr/lib64/libQt5Svg.so.5.11.0 /usr/lib64/libQt5Xml.so.5.11.0 -lSBW -lpthread -lz ../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -ldl -lxslt -lm -lcurl -lxml2 -lz -llzma -ldl -lxslt -lexpat -lsedml /usr/lib64/libQt5Widgets.so.5.11.0 /usr/lib64/libQt5Gui.so.5.11.0 /usr/lib64/libQt5Core.so.5.11.0 -lqwt-qt5 -lqwtplot3d-qt5 -lmml -lGL -lGLU /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target CopasiUI make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build/CMakeFiles 0 + popd ~/build/BUILD/COPASI-Build-184 + mkdir -p build2 + pushd build2 ~/build/BUILD/COPASI-Build-184/build2 ~/build/BUILD/COPASI-Build-184 + export 'CXXFLAGS=-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP' + CXXFLAGS='-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP' + export LIBBLAS=libopenblas.so + LIBBLAS=libopenblas.so + export INCBLAS=/usr/include/openblas + INCBLAS=/usr/include/openblas + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCOPASI_OVERRIDE_VERSION:STRING=4.23.184 -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.7m -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.7m.so -DENABLE_PERL:BOOL=OFF -DENABLE_R:BOOL=OFF -DR_INCLUDE_DIRS:PATH=/usr/include/R -DENABLE_CSHARP:BOOL=OFF -DBUILD_CS_EXAMPLES:BOOL=OFF -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DBUILD_GUI:BOOL=OFF -DENABLE_MML:BOOL=OFF -DENABLE_USE_SBMLUNIT=ON '-DCMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -pthread' '-DCMAKE_EXE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now' -DENABLE_SBW_INTEGRATION=ON -DBUILD_CXX_EXAMPLES=ON -DENABLE_COPASI_BANDED_GRAPH:BOOL=ON -DENABLE_COPASI_SEDML:BOOL=ON -DENABLE_COPASI_NONLIN_DYN_OSCILLATION:BOOL=ON -DENABLE_COPASI_EXTUNIT:BOOL=ON -DBLAS_blas_LIBRARY:FILEPATH=/usr/lib64/libopenblas.so -DLAPACK_lapack_LIBRARY:FILEPATH=/usr/lib64/ -DCLAPACK_INCLUDE_DIR:PATH=/usr/include/openblas -DENABLE_FLEX_BISON:BOOL=ON -DENABLE_COPASI_PARAMETERFITTING_RESIDUAL_SCALING:BOOL=ON -DENABLE_WITH_MERGEMODEL:BOOL=ON -DENABLE_USE_MATH_CONTAINER:BOOL=ON -DLIBSBML_INCLUDE_DIR:PATH=/usr/include/sbml -DLIBSBML_SHARED:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DF2C_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DENABLE_GPROF:BOOL=OFF -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DENABLE_FLEX_BISON:BOOL=ON -DBISON_EXECUTABLE:FILEPATH=/usr/bin/bison -DPREFER_STATIC:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES .. -- The C compiler identification is GNU 8.1.1 -- The CXX compiler identification is GNU 8.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- -- Found COMBINE: Combine-static -- Found FLEX: /usr/bin/flex (found version "2.6.1") -- Found BISON: /usr/bin/bison (found version "3.0.4") -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Looking for cheev_ WARNING: Target "cmTC_de523" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. -- Looking for cheev_ - found -- Found CLAPACK: /usr/lib64;/usr/lib64/libopenblas.so -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- -lexpat -- Found Expat: /lib64/libexpat.so (found version "2.2.5") -- Found Raptor: /lib64/libraptor.so;-lm;-lcurl;-lxml2;-lz;-llzma;-lm;-ldl;-lxslt;-lxml2;-lm (found version "1.4.21") -- Looking for sbml -- Found LIBSBML: sbml -- Found LIBSEDML: /lib64/libsedml.so -- Found SWIG: /usr/bin/swig (found version "3.0.12") -- Found PythonInterp: /usr/bin/python3 (found version "3.7") -- Found PythonLibs: /usr/lib64/libpython3.7m.so (found version "3.7.0rc1") -- ----------------------------------------------------------- Building COPASI 4.23.184 (Release) Source Dir = /builddir/build/BUILD/COPASI-Build-184 Binary Dir = /builddir/build/BUILD/COPASI-Build-184/build2 Install Prefix = /usr Dependencies: Vendor = Generic LAPACK Libs = /usr/lib64;/usr/lib64/libopenblas.so LAPACK LDFLAGS = Expat Libs = /lib64/libexpat.so Expat include = /usr/include Raptor Libs = /lib64/libraptor.so;-lm;-lcurl;-lxml2;-lz;-llzma;-lm;-ldl;-lxslt;-lxml2;-lm Raptor include = /usr/include libSBML lib = /usr/lib64/libsbml.so libSBML include = /usr/include/sbml Qt lib = Qt include = Qt version = QWT lib = QWT include = QWT version = (0x) qwtplot3d lib = qwtplot3d include = qtmml lib = qtmml include = SBW lib = SBW include = libSEDML lib = /lib64/libsedml.so libSEDML include = /usr/include Options: COPASI_EXTUNIT = ON SBW integration = ON SBML Unit = ON Model Merging = ON SEDML support = ON Combine Archive support = ON SDE support = ON GPROF support = OFF UNDO framework = ON Versioning framework = OFF Provenance framework = OFF Analytics Task = OFF Additional Defines = COPASI_PARAMETERFITTING_RESIDUAL_SCALING;COPASI_BANDED_GRAPH;COPASI_NONLIN_DYN_OSCILLATION;COPASI_EXTUNIT;WITH_MERGEMODEL;WITH_PE_EVENT_CREATION;WITH_COMBINE_ARCHIVE;WITH_SDE_SUPPORT;HAVE_F2C_H;HAVE_CLAPACK_H;COPASI_SEDML;Linux;USE_SBMLUNIT;COPASI_SEDML;COPASI_UNDO Language Bindings: SWIG = /usr/bin/swig .NET Bindings = OFF Java Bindings = OFF Python Bindings = ON Perl Bindings = OFF Octave Bindings = OFF R Bindings = OFF Building: COPASI SE = ON COPASI UI = OFF C++ Examples = ON SBML TestRunner = OFF Franks TestRunner = OFF Semantic Testsuite = OFF Stochastic Testsuite = OFF Steady State TestRunner = OFF MCA TestRunner = OFF ----------------------------------------------------------- -- Configuring done WARNING: Target "libCOPASISE-static" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "libCOPASISE-static" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "assignParameterSet" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "calculateSolutionStatistic" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example1" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example10" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example2" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example3" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example4" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example5" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example6" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example7" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example8" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "example9" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "exportSedML" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "printAffectedExperiments" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "printFluxModes" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "renameActiveReport" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "runSedML" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "binding_python_lib" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "CopasiSE" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_CS_EXAMPLES CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CSHARP_COMPILER ENABLE_MML ENABLE_USE_MATH_CONTAINER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX R_INCLUDE_DIRS SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/COPASI-Build-184/build2 + /usr/bin/make -O -j4 /usr/bin/cmake -H/builddir/build/BUILD/COPASI-Build-184 -B/builddir/build/BUILD/COPASI-Build-184/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build2/CMakeFiles /builddir/build/BUILD/COPASI-Build-184/build2/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/depend /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Nothing to be done for 'copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 0%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CMakeFiles/libCOPASISE-core.dir/DependInfo.cmake --color= Scanning dependencies of target libCOPASISE-core make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CBiologicalDescription.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CConstants.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CModified.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CModelMIRIAMInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CMIRIAMResource.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFLiteral.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFGraphConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFGraph.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFSubject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFTriplet.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp: In member function 'bool CDataModel::importSEDML(const string&, CProcessReport*, const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:1674:20: warning: unused variable 'trajTask' [-Wunused-variable] CTrajectoryTask *trajTask = NULL; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp: In member function 'bool CDataModel::exportSEDML(const string&, bool, int, int, bool, bool, CProcessReport*)': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:1879:16: warning: unused variable 'pOrigSEDMLDocument' [-Wunused-variable] SedDocument* pOrigSEDMLDocument = NULL; ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp: In member function 'void CDataModel::pushData()': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:2449:8: warning: variable 'condition' set but not used [-Wunused-but-set-variable] bool condition = true; ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.cpp:21: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRaptorInit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFWriter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFWriter.cpp: In member function 'char* CRDFWriter::write(const CRDFGraph*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFWriter.cpp:90:8: warning: variable 'success' set but not used [-Wunused-but-set-variable] bool success = true; ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CRDFPredicate.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/CReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getName(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:149:9: warning: the compiler can assume that the address of '_getNameReturn' will never be NULL [-Waddress] if (!&_getNameReturn) ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:149:9: warning: the compiler can assume that the address of '_getNameReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocation(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:224:9: warning: the compiler can assume that the address of '_getLocationReturn' will never be NULL [-Waddress] if (!&_getLocationReturn) ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:224:9: warning: the compiler can assume that the address of '_getLocationReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getURI(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:299:9: warning: the compiler can assume that the address of '_getURIReturn' will never be NULL [-Waddress] if (!&_getURIReturn) ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:299:9: warning: the compiler can assume that the address of '_getURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataResources(std::__cxx11::string, ns2__getDataResourcesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:372:9: warning: the compiler can assume that the address of '_param_1' will never be NULL [-Waddress] if (!&_param_1) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:372:9: warning: the compiler can assume that the address of '_param_1' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesInfo(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:444:9: warning: the compiler can assume that the address of 'getServicesInfoReturn' will never be NULL [-Waddress] if (!&getServicesInfoReturn) ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:444:9: warning: the compiler can assume that the address of 'getServicesInfoReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:517:9: warning: the compiler can assume that the address of 'getServicesVersionReturn' will never be NULL [-Waddress] if (!&getServicesVersionReturn) ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:517:9: warning: the compiler can assume that the address of 'getServicesVersionReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getJavaLibraryVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:590:9: warning: the compiler can assume that the address of 'getJavaLibraryVersionReturn' will never be NULL [-Waddress] if (!&getJavaLibraryVersionReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:590:9: warning: the compiler can assume that the address of 'getJavaLibraryVersionReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:664:9: warning: the compiler can assume that the address of '_getDataTypeURIReturn' will never be NULL [-Waddress] if (!&_getDataTypeURIReturn) ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:664:9: warning: the compiler can assume that the address of '_getDataTypeURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURIs(std::__cxx11::string, ns2__getDataTypeURIsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:737:9: warning: the compiler can assume that the address of '_param_2' will never be NULL [-Waddress] if (!&_param_2) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:737:9: warning: the compiler can assume that the address of '_param_2' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeDef(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:810:9: warning: the compiler can assume that the address of '_getDataTypeDefReturn' will never be NULL [-Waddress] if (!&_getDataTypeDefReturn) ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:810:9: warning: the compiler can assume that the address of '_getDataTypeDefReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:884:9: warning: the compiler can assume that the address of '_param_3' will never be NULL [-Waddress] if (!&_param_3) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:884:9: warning: the compiler can assume that the address of '_param_3' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations_(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse_&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:957:9: warning: the compiler can assume that the address of '_param_4' will never be NULL [-Waddress] if (!&_param_4) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:957:9: warning: the compiler can assume that the address of '_param_4' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::isDeprecated(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1030:9: warning: the compiler can assume that the address of '_isDeprecatedReturn' will never be NULL [-Waddress] if (!&_isDeprecatedReturn) ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1030:9: warning: the compiler can assume that the address of '_isDeprecatedReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getOfficialDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1104:9: warning: the compiler can assume that the address of '_getOfficialDataTypeURIReturn' will never be NULL [-Waddress] if (!&_getOfficialDataTypeURIReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1104:9: warning: the compiler can assume that the address of '_getOfficialDataTypeURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getMiriamURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1178:9: warning: the compiler can assume that the address of '_getMiriamURIReturn' will never be NULL [-Waddress] if (!&_getMiriamURIReturn) ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1178:9: warning: the compiler can assume that the address of '_getMiriamURIReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypePattern(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1252:9: warning: the compiler can assume that the address of '_getDataTypePatternReturn' will never be NULL [-Waddress] if (!&_getDataTypePatternReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1252:9: warning: the compiler can assume that the address of '_getDataTypePatternReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInfo(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1326:9: warning: the compiler can assume that the address of '_getResourceInfoReturn' will never be NULL [-Waddress] if (!&_getResourceInfoReturn) ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1326:9: warning: the compiler can assume that the address of '_getResourceInfoReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInstitution(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1400:9: warning: the compiler can assume that the address of '_getResourceInstitutionReturn' will never be NULL [-Waddress] if (!&_getResourceInstitutionReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1400:9: warning: the compiler can assume that the address of '_getResourceInstitutionReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceLocation(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1474:9: warning: the compiler can assume that the address of '_getResourceLocationReturn' will never be NULL [-Waddress] if (!&_getResourceLocationReturn) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1474:9: warning: the compiler can assume that the address of '_getResourceLocationReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeSynonyms(std::__cxx11::string, ns2__getDataTypeSynonymsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1547:9: warning: the compiler can assume that the address of '_param_5' will never be NULL [-Waddress] if (!&_param_5) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1547:9: warning: the compiler can assume that the address of '_param_5' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getNames(std::__cxx11::string, ns2__getNamesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1619:9: warning: the compiler can assume that the address of '_param_6' will never be NULL [-Waddress] if (!&_param_6) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1619:9: warning: the compiler can assume that the address of '_param_6' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesName(ns2__getDataTypesNameResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1690:9: warning: the compiler can assume that the address of '_param_7' will never be NULL [-Waddress] if (!&_param_7) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServimake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' cesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1690:9: warning: the compiler can assume that the address of '_param_7' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesId(ns2__getDataTypesIdResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1761:9: warning: the compiler can assume that the address of '_param_8' will never be NULL [-Waddress] if (!&_param_8) ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1761:9: warning: the compiler can assume that the address of '_param_8' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::checkRegExp(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1835:9: warning: the compiler can assume that the address of '_checkRegExpReturn' will never be NULL [-Waddress] if (!&_checkRegExpReturn) ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1835:9: warning: the compiler can assume that the address of '_checkRegExpReturn' will never be NULL [-Waddress] /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesName(ns2__getDataTypesNameResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1690:3: warning: nonnull argument '_param_7' compared to NULL [-Wnonnull-compare] if (!&_param_7) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypesId(ns2__getDataTypesIdResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1761:3: warning: nonnull argument '_param_8' compared to NULL [-Wnonnull-compare] if (!&_param_8) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getName(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:149:3: warning: nonnull argument '_getNameReturn' compared to NULL [-Wnonnull-compare] if (!&_getNameReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocation(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:224:3: warning: nonnull argument '_getLocationReturn' compared to NULL [-Wnonnull-compare] if (!&_getLocationReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getURI(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:299:3: warning: nonnull argument '_getURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataResources(std::__cxx11::string, ns2__getDataResourcesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:372:3: warning: nonnull argument '_param_1' compared to NULL [-Wnonnull-compare] if (!&_param_1) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesInfo(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:444:3: warning: nonnull argument 'getServicesInfoReturn' compared to NULL [-Wnonnull-compare] if (!&getServicesInfoReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getServicesVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:517:3: warning: nonnull argument 'getServicesVersionReturn' compared to NULL [-Wnonnull-compare] if (!&getServicesVersionReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getJavaLibraryVersion(std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:590:3: warning: nonnull argument 'getJavaLibraryVersionReturn' compared to NULL [-Wnonnull-compare] if (!&getJavaLibraryVersionReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:664:3: warning: nonnull argument '_getDataTypeURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getDataTypeURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeURIs(std::__cxx11::string, ns2__getDataTypeURIsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:737:3: warning: nonnull argument '_param_2' compared to NULL [-Wnonnull-compare] if (!&_param_2) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeDef(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:810:3: warning: nonnull argument '_getDataTypeDefReturn' compared to NULL [-Wnonnull-compare] if (!&_getDataTypeDefReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:884:3: warning: nonnull argument '_param_3' compared to NULL [-Wnonnull-compare] if (!&_param_3) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getLocations_(std::__cxx11::string, std::__cxx11::string, ns2__getLocationsResponse_&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:957:3: warning: nonnull argument '_param_4' compared to NULL [-Wnonnull-compare] if (!&_param_4) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::isDeprecated(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1030:3: warning: nonnull argument '_isDeprecatedReturn' compared to NULL [-Wnonnull-compare] if (!&_isDeprecatedReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getOfficialDataTypeURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1104:3: warning: nonnull argument '_getOfficialDataTypeURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getOfficialDataTypeURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getMiriamURI(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1178:3: warning: nonnull argument '_getMiriamURIReturn' compared to NULL [-Wnonnull-compare] if (!&_getMiriamURIReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypePattern(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1252:3: warning: nonnull argument '_getDataTypePatternReturn' compared to NULL [-Wnonnull-compare] if (!&_getDataTypePatternReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInfo(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1326:3: warning: nonnull argument '_getResourceInfoReturn' compared to NULL [-Wnonnull-compare] if (!&_getResourceInfoReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceInstitution(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1400:3: warning: nonnull argument '_getResourceInstitutionReturn' compared to NULL [-Wnonnull-compare] if (!&_getResourceInstitutionReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getResourceLocation(std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1474:3: warning: nonnull argument '_getResourceLocationReturn' compared to NULL [-Wnonnull-compare] if (!&_getResourceLocationReturn) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getDataTypeSynonyms(std::__cxx11::string, ns2__getDataTypeSynonymsResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1547:3: warning: nonnull argument '_param_5' compared to NULL [-Wnonnull-compare] if (!&_param_5) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::getNames(std::__cxx11::string, ns2__getNamesResponse&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1619:3: warning: nonnull argument '_param_6' compared to NULL [-Wnonnull-compare] if (!&_param_6) ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp: In member function 'virtual int MiriamWebServicesSoapBindingProxy::checkRegExp(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp:1835:3: warning: nonnull argument '_checkRegExpReturn' compared to NULL [-Wnonnull-compare] if (!&_checkRegExpReturn) ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CArray.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CCommonName.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArrayElementReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataArrayElementReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataArrayElementReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataArray.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapC.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/soapC.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp: In function 'ArrayOf_USCORExsd_USCOREstring* soap_in_ArrayOf_USCORExsd_USCOREstring(soap*, const char*, ArrayOf_USCORExsd_USCOREstring*, const char*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp:2260:48: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'std::__cxx11::string' {aka 'class std::__cxx11::basic_string'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(p, &q, sizeof(std::string)); ^ In file included from /usr/include/c++/8/string:52, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:511, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapStub.h:41, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapH.h:23, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/soapC.cpp:23: /usr/include/c++/8/bits/basic_string.h:77:11: note: 'std::__cxx11::string' {aka 'class std::__cxx11::basic_string'} declared here class basic_string ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataString.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/stdsoap2.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/WebServicesIssues/stdsoap2.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'int fsend(soap*, const char*, size_t)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:592:63: warning: passing argument 3 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, NULL, &fd, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:737:61: warning: passing argument 3 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, NULL, &fd, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'size_t frecv(soap*, char*, size_t)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:1075:55: warning: passing argument 2 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, &fd, NULL, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:1196:49: warning: passing argument 2 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] r = select((int)soap->socket + 1, &fd, NULL, &fd, &timeout); ^~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'int soap_accept(soap*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:5865:55: warning: passing argument 2 to restrict-qualified parameter aliases with arguments 3, 4 [-Wrestrict] r = select((int)soap->master + 1, &fd, &fd, &fd, &timeout); ^~~ ~~~ ~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'const char* soap_set_validation_fault(soap*, const char*, const char*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:18802:29: warning: '%s' directive writing up to 1023 bytes into a region of size 978 [-Wformat-overflow=] sprintf(soap->msgbuf, "Validation constraint violation: %s%s in element <%s>", s, t ? t : SOAP_STR_EOS, soap->tag); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:861, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:503, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 48 or more bytes (assuming 1071) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp: In function 'void soap_set_fault(soap*)': /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:18891:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] sprintf(soap->msgbuf, "Method '%s' not implemented: method name or namespace not recognized", soap->tag); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:861, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:503, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 67 and 1090 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:18864:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1003 [-Wformat-overflow=] sprintf(soap->msgbuf, "The data in element '%s' must be understood but cannot be handled", soap->tag); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:861, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:503, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 64 and 1087 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.h:504, from /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:89: In function 'char* strcat(char*, const char*)', inlined from 'int http_parse(soap*)' at /builddir/build/BUILD/COPASI-Build-184/copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp:17148:19: /usr/include/bits/string_fortified.h:128:33: warning: 'char* __builtin___strcat_chk(char*, const char*, long unsigned int)' accessing 1025 or more bytes at offsets 99744 and 100768 may overlap 1 byte at offset 100768 [-Wrestrict] return __builtin___strcat_chk (__dest, __src, __bos (__dest)); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataContainer.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataContainer.cpp: In member function 'void CDataContainer::CObjectMap::objectRenamed(CDataObject*, const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataContainer.cpp:309:16: warning: unused variable 'success' [-Wunused-variable] bool success = (itMap->second.erase(pObject) > 0); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataTimer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CObjectInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRegisteredCommonName.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:14: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h: In constructor 'CDataObject::CDataObject()': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:269:13: warning: 'CDataObject::mPrerequisits' will be initialized after [-Wreorder] ObjectSet mPrerequisits; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:265:33: warning: 'std::set CDataObject::mReferencedValidities' [-Wreorder] std::set< const CValidity * > mReferencedValidities; ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:26:1: warning: when initialized here [-Wreorder] CDataObject::CDataObject(): ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:14: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h: In constructor 'CDataObject::CDataObject(const string&, const CDataContainer*, const string&, const CFlags&)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:269:13: warning: 'CDataObject::mPrerequisits' will be initialized after [-Wreorder] ObjectSet mPrerequisits; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:265:33: warning: 'std::set CDataObject::mReferencedValidities' [-Wreorder] std::set< const CValidity * > mReferencedValidities; ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:40:1: warning: when initialized here [-Wreorder] CDataObject::CDataObject(const std::string & name, ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:14: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h: In constructor 'CDataObject::CDataObject(const CDataObject&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:269:13: warning: 'CDataObject::mPrerequisits' will be initialized after [-Wreorder] ObjectSet mPrerequisits; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObject.h:265:33: warning: 'std::set CDataObject::mReferencedValidities' [-Wreorder] std::set< const CValidity * > mReferencedValidities; ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CDataObject.cpp:76:1: warning: when initialized here [-Wreorder] CDataObject::CDataObject(const CDataObject & src, ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CLocaleString.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptionParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.h: In constructor 'CRootContainer::CRootContainer(const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.h:75:23: warning: 'CRootContainer::mpUnitDefinitionList' will be initialized after [-Wreorder] CUnitDefinitionDB * mpUnitDefinitionList; ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.h:73:23: warning: 'CConfigurationFile* CRootContainer::mpConfiguration' [-Wreorder] CConfigurationFile* mpConfiguration; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/core/CRootContainer.cpp:38:1: warning: when initialized here [-Wreorder] CRootContainer::CRootContainer(const bool & withGUI): ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:22: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h: In constructor 'CConfigurationFile::CConfigurationFile(const string&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:478:10: warning: 'CConfigurationFile::mpValidateUnits' will be initialized after [-Wreorder] bool * mpValidateUnits; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:467:27: warning: 'CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity' [-Wreorder] CCopasiParameterGroup * mpDisplayIssueSeverity; ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:109:1: warning: when initialized here [-Wreorder] CConfigurationFile::CConfigurationFile(const std::string & name, ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:22: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h: In constructor 'CConfigurationFile::CConfigurationFile(const CConfigurationFile&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:478:10: warning: 'CConfigurationFile::mpValidateUnits' will be initialized after [-Wreorder] bool * mpValidateUnits; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.h:467:27: warning: 'CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity' [-Wreorder] CCopasiParameterGroup * mpDisplayIssueSeverity; ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:139:1: warning: when initialized here [-Wreorder] CConfigurationFile::CConfigurationFile(const CConfigurationFile & src, ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/CConfigurationFile.cpp:23: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.cpp:50: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalCall.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalChoice.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalChoiceLogical.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CEvaluationNodeNormalizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalFraction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalGeneralPower.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalItemPower.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogicalItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalProduct.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalProduct.cpp: In copy constructor 'CNormalProduct::CNormalProduct(const CNormalProduct&)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalProduct.cpp:68:12: warning: unused variable 'result' [-Wunused-variable] bool result = this->mItemPowers.insert(pDestItemPower).second; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp: In copy constructor 'CNormalSum::CNormalSum(const CNormalSum&)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp:91:12: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = mProducts.insert(new CNormalProduct(*pTmpProduct)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalSum.cpp:100:12: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = mFractions.insert(new CNormalFraction(**it2)).second; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:29: /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySetOfSets(const CNormalLogical::TemplateSetOfSets&, CNormalLogical::TemplateSetOfSets&) [with TYPE = CNormalChoiceLogical]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:39:45: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = target.insert(std::make_pair(tmpSet, it->second)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySetOfSets(const CNormalLogical::TemplateSetOfSets&, CNormalLogical::TemplateSetOfSets&) [with TYPE = CNormalLogicalItem]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:41:45: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable 'tmpRes' [-Wunused-variable] /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalChoiceLogical]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:216:38: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalLogicalItem]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.cpp:494:43: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:54: /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalChoiceLogical]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2632:64: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h: In instantiation of 'static void CNormalLogical::copySet(const CNormalLogical::TemplateSet&, CNormalLogical::TemplateSet&) [with TYPE = CNormalLogicalItem]': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2642:65: required from here /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable 'tmpRes' [-Wunused-variable] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionProblem.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionProblem.cpp: In function 'std::ostream& operator<<(std::ostream&, const CCrossSectionProblem&)': /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionProblem.cpp:90:21: warning: unused variable 'pDataModel' [-Wunused-variable] const CDataModel* pDataModel = o.getObjectDataModel(); ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/crosssection/CCrossSectionTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/compare_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/compare_utilities.cpp: In function 'bool contains_necessary_mass_action_elements(const CDataVector&, const CNormalProduct*, const CModel*)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/compare_utilities.cpp:1226:25: warning: unused variable 'pDatamodel' [-Wunused-variable] const CDataModel* pDatamodel = dynamic_cast(pModel->getObjectParent()); ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CBitPatternTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CBitPatternTreeNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CBitPatternMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp: In static member function 'static CNormalFraction* CNormalTranslation::normAndSimplifyReptdly(const CEvaluationNode*, unsigned int)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp:170:20: warning: unused variable 'pFraction' [-Wunused-variable] CNormalFraction* pFraction = dynamic_cast(base0); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp: In static member function 'static CEvaluationNode* CNormalTranslation::newCancel(const CEvaluationNode*)': /builddir/build/BUILD/COPASI-Build-184/copasi/compareExpressions/CNormalTranslation.cpp:4071:34: warning: unused variable 'pChild2' [-Wunused-variable] const CEvaluationNode* pChild2 = dynamic_cast(pChild1->getSibling()); ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CEFMMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CFluxScore.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CFluxMode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CEFMTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CTableauLine.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CZeroSet.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/elementaryFluxModes/CTableauMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CCallParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationParser_yacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CDerive.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/function/CDerive.cpp: In static member function 'static CEvaluationNode* CDerive::deriveBranch(const CEvaluationNode*, const CDataObject*, std::vector&, const CEvaluationTree*, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CDerive.cpp:495:25: warning: unused variable 'tmpFunction' [-Wunused-variable] const CFunction * tmpFunction = dynamic_cast(pENCall->getCalledTree()); ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationLexer_lex.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp: In member function 'virtual ASTNode* CEvaluationNodeConstant::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeConstant.cpp:233:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeChoice.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeCall.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeDelay.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNode.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNode.cpp: In member function 'bool CEvaluationNode::operator<(const CEvaluationNode&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNode.cpp:841:10: warning: enumeration value 'UNIT' not handled in switch [-Wswitch] switch (mainType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In constructor 'CEvaluationNodeLogical::CEvaluationNodeLogical(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:47:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In member function 'virtual CIssue CEvaluationNodeLogical::compile(const CEvaluationTree*)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SIN' not handled in switch [-Wsmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' witch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:117:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In member function 'virtual CValidatedUnit CEvaluationNodeLogical::getUnit(const CMathContainer&, const std::vector&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:416:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In member function 'virtual CValidatedUnit CEvaluationNodeLogical::setUnit(const CMathContainer&, const std::map&, std::map&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:452:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp: In static member function 'static CEvaluationNode* CEvaluationNodeLogical::fromAST(const ASTNode*, const std::vector&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeLogical.cpp:547:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp: In member function 'virtual ASTNode* CEvaluationNodeFunction::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1062:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp: In member function 'virtual std::__cxx11::string CEvaluationNodeFunction::getMMLString(const std::vector >&, bool, const std::vector > >&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeFunction.cpp:1489:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp: In constructor 'CEvaluationNodeNumber::CEvaluationNodeNumber(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:46:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp: In member function 'virtual ASTNode* CEvaluationNodeNumber::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /bumake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' ilddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeNumber.cpp:235:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp: In constructor 'CEvaluationNodeStructure::CEvaluationNodeStructure(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeStructure.cpp:35:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In constructor 'CEvaluationNodeObject::CEvaluationNodeObject(const CEvaluationNode::SubType&, const Data&)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:56:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'virtual CIssue CEvaluationNodeObject::compile(const CEvaluationTree*)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:124:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'virtual const Data& CEvaluationNodeObject::getData() const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:251:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'virtual std::__cxx11::string CEvaluationNodeObject::getInfix(const std::vector >&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:277:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp: In member function 'void CEvaluationNodeObject::setObjectValuePtr(double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeObject.cpp:473:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeWhiteSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeVariable.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CExpression.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CExpression.cpp: In member function 'void CExpression::initObjects()': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CExpression.cpp:56:22: warning: unused variable 'pObject' [-Wunused-variable] CObjectInterface * pObject = ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp: In member function 'virtual ASTNode* CEvaluationNodeOperator::toAST(const CDataModel*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (subType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:532:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp: In member function 'virtual std::__cxx11::string CEvaluationNodeOperator::getMMLString(const std::vector >&, bool, const std::vector > >&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (mSubType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationNodeOperator.cpp:1539:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp: In member function 'bool CEvaluationTree::setTree(const ASTNode&, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:627:24: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (TargetType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:611:20: warning: unused variable 'pErrorNode' [-Wunused-variable] CEvaluationNode *pErrorNode = NULL; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp: In static member function 'static CEvaluationNode* CEvaluationTree::fromAST(const ASTNode*, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_QUALIFIER_BVAR' not handled in switch [-Wswitch] switch (itNode->getType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_QUALIFIER_LOGBASE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_QUALIFIER_DEGREE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_SEMANTICS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_CONSTRUCTOR_PIECE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_CONSTRUCTOR_OTHERWISE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_QUOTIENT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_RATE_OF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_FUNCTION_REM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_LOGICAL_IMPLIES' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_CSYMBOL_FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/function/CEvaluationTree.cpp:676:18: warning: enumeration value 'AST_ORIGINATES_IN_PACKAGE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionDB.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CKinFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CMassAction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CAbstractLayoutInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CNodeK.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/function/CFunctionAnalyzer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLEllipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLDefaultStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGlyphs.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi 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/builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLImageTexturizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLImage.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGroup.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGroup.cpp: In member function 'RenderGroup* CLGroup::toSBML(unsigned int, unsigned int) const': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLGroup.cpp:884:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalRenderInformation.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalRenderInformation.cpp: In member function 'LocalRenderInformation* CLLocalRenderInformation::toSBML(unsigned int, unsigned int) const': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLLocalRenderInformation.cpp:159:11: warning: unused variable 'result' [-Wunused-variable] int result = pLRI->addStyle(pStyle); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderFlattener.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderInformationBase.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderInformationBase.cpp: In member function 'void CLRenderInformationBase::addSBMLAttributes(RenderInformationBase*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderInformationBase.cpp:423:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLText.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLRenderResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLUnresolvedReferenceException.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLTransformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLayoutEngine.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLayoutInitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLayoutState.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/SBMLDocumentLoader.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/layout/SBMLDocumentLoader.cpp: In static member function 'static CLayout* SBMLDocumentLoader::createLayout(const Layout&, const std::map, std::__cxx11::basic_string >&, std::map, std::__cxx11::basic_string >&, const std::map, std::__cxx11::basic_string >&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/layout/SBMLDocumentLoader.cpp:267:10: warning: unused variable 'count' [-Wunused-variable] size_t count = idToKeyMap.size() + globalIdToKeyMap.size(); ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CListOfLayouts.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAMethod.cpp: In member function 'int CLNAMethod::calculateCovarianceMatrixReduced()': /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNAMethod.cpp:298:21: warning: unused variable 'pJacobian' [-Wunused-variable] const C_FLOAT64 * pJacobian = mJacobianReduced.array(); ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lna/CLNATask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lyap/CLyapMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie 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-DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lyap/CLyapProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lyap/CLyapTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/lyap/CLyapWolfMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDelay.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyNodeIterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEnum.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp: In member function 'std::__cxx11::string CMathDependencyGraph::getDOTNodeId(const CObjectInterface*) const': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'Noise' not handled in switch [-Wswitch] switch (pMathObject->getValueType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'ParticleNoise' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'DelayValue' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'DelayLag' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value 'TransitionTime' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathDependencyGraph.cpp:570:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:15: /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h: In copy constructor 'CMathEventQueue::CAction::CAction(const CMathEventQueue::CAction&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:187:23: warning: 'CMathEventQueue::CAction::mpPriority' will be initialized after [-Wreorder] const C_FLOAT64 * mpPriority; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:182:26: warning: 'CVector CMathEventQueue::CAction::mValues' [-Wreorder] CVector< C_FLOAT64 > mValues; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:71:1: warning: when initialized here [-Wreorder] CMathEventQueue::CAction::CAction(const CAction & src): ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp: In constructor 'CMathEventQueue::CAction::CAction(CMathEvent*, CMathEventQueue*)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:89:10: warning: enumeration value 'Stop' not handled in switch [-Wswitch] switch (pEvent->getType()) ^ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:15: /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h: In constructor 'CMathEventQueue::CAction::CAction(const CVector&, CMathEvent*, CMathEventQueue*)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:187:23: warning: 'CMathEventQueue::CAction::mpPriority' will be initialized after [-Wreorder] const C_FLOAT64 * mpPriority; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.h:182:26: warning: 'CVector CMathEventQueue::CAction::mValues' [-Wreorder] CVector< C_FLOAT64 > mValues; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEventQueue.cpp:102:1: warning: when initialized here [-Wreorder] CMathEventQueue::CAction::CAction(const CVector< C_FLOAT64 > & values, ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp: In member function 'virtual CIssue CMathExpression::compile()': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch ((*it)->subType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'GT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'GE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'LE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathExpression.cpp:218:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp: In static member function 'static CEvaluationNode* CMathEvent::CTrigger::compileLE(const CEvaluationNode*, const std::vector&, const CMath::Variables&, CMathEvent::CTrigger::CRootProcessor*&, CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DEFAULT' not handled in switch [-Wswitch] switch (pTriggerNode->subType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DELAY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'IF' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'VECTOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DOUBLE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'FUNCTION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'LOG' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'OPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'PI' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'POWER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EXPRESSION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'POINTER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EXPONENTIALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'INTEGER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'LOG10' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MULTIPLY' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'OR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'VECTOROPEN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'DIVIDE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ENOTATION' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EXP' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'True' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'XOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RATIONALE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'AND' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'False' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MODULUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'VECTORCLOSE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'EQ' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'Infinity' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'PLUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'NaN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MINUS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'NE' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'TAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'REMAINDER' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'TANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'COTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCTAN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSEC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCSC' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSINH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOSH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCTANH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCSECH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCSCH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ARCCOTH' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SQRT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'ABS' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'FLOOR' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'CEIL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'FACTORIAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'NOT' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RUNIFORM' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RNORMAL' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MAX' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'MIN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RGAMMA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'RPOISSON' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'SIGN' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'AVOGADRO' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value 'INVALID' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathEvent.cpp:986:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathUpdateSequence.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqParser_yacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqParser_lex.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::compile(CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:603:10: warning: enumeration value 'DelayValue' not handled in switch [-Wswitch] switch (mValueType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:603:10: warning: enumeration value 'DelayLag' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::compileInitialValue(CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:709:28: warning: unused variable 'pComparment' [-Wunused-variable] const CCompartment * pComparment = pSpecies->getCompartment(); ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::createIntensiveValueExpression(const CMetab*, CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1686:22: warning: unused variable 'pNumber' [-Wunused-variable] CObjectInterface * pNumber = NULL; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1687:22: warning: unused variable 'pCompartment' [-Wunused-variable] CObjectInterface * pCompartment = NULL; ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp: In member function 'bool CMathObject::createExtensiveValueExpression(const CMetab*, CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1721:22: warning: variable 'pIntensiveValue' set but not used [-Wunused-but-set-variable] CObjectInterface * pIntensiveValue = NULL; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathObject.cpp:1722:22: warning: variable 'pCompartment' set but not used [-Wunused-but-set-variable] CObjectInterface * pCompartment = NULL; ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:13: /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.h: In copy constructor 'CMathContainer::CMathContainer(const CMathContainer&)': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.h:1104:37: warning: 'CMathContainer::mRandom' will be initialized after [-Wreorder] CDataObjectReference< C_FLOAT64 > mRandom; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.h:1103:23: warning: 'const CDataObject* CMathContainer::mpQuantity2NumberFactor' [-Wreorder] const CDataObject * mpQuantity2NumberFactor; ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:411:1: warning: when initialized here [-Wreorder] CMathContainer::CMathContainer(const CMathContainer & src): ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp: In member function 'void CMathContainer::createSynchronizeInitialValuesSequence()': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:2370:20: warning: enumeration value 'Undefined' not handled in switch [-Wswitch] switch (pObject->getSimulationType()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp: In member function 'void CMathContainer::createApplyInitialValuesSequence()': /builddir/build/BUILD/COPASI-Build-184/copasi/math/CMathContainer.cpp:2502:20: warning: enumeration value 'Undefined' not handled in switch [-Wswitch] switch (pObject->getSimulationType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 36%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO 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'/builddir/build/BUILD/COPASI-Build-184/build2' [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEq.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 36%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CCompartment.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CCompartment.cpp: In member function 'virtual void CCompartment::appendDependentData(CUndoData&, const CCore::Framework&)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CCompartment.cpp:74:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (undoData.getType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 36%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CChemEqInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 36%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CEvent.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 37%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMetabNameInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 37%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMetab.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 36%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMMLOutput.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMMLOutput.cpp: In static member function 'static void CMMLOutput::writeDifferentialEquations(std::ostream&, CModel*, bool, bool, bool)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMMLOutput.cpp:279:8: warning: variable 'hasContents' set but not used [-Wunused-but-set-variable] bool hasContents = false; ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 37%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelAnalyzer.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 37%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelExpansion.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 38%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelMerging.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelMerging.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelMerging.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelMerging.cpp: In member function 'void CModelMerging::simpleCall(std::vector >&, std::vector >&)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelMerging.cpp:979:48: warning: 'metab1' may be used uninitialized in this function [-Wmaybe-uninitialized] metab1->getObjectName().c_str(), metab->getObjectName().c_str()); ^ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 38%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 38%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelParameterGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 38%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelParameterSet.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 38%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.h:28, from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:32: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h: In constructor 'CModelEntity::CModelEntity(const string&, const CDataContainer*, const string&, const CFlags&)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:458:20: warning: 'CModelEntity::mpModel' will be initialized after [-Wreorder] mutable CModel * mpModel; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:439:15: warning: 'std::__cxx11::string CModelEntity::mUnitExpression' [-Wreorder] std::string mUnitExpression; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:127:1: warning: when initialized here [-Wreorder] CModelEntity::CModelEntity(const std::string & name, ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.h:28, from /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:32: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h: In constructor 'CModelEntity::CModelEntity(const CModelEntity&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:458:20: warning: 'CModelEntity::mpModel' will be initialized after [-Wreorder] mutable CModel * mpModel; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/model/CModelValue.h:439:15: warning: 'std::__cxx11::string CModelEntity::mUnitExpression' [-Wreorder] std::string mUnitExpression; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModelValue.cpp:153:1: warning: when initialized here [-Wreorder] CModelEntity::CModelEntity(const CModelEntity & src, ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 39%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMoiety.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMoiety.cpp: In member function 'void CMoiety::initObjects()': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CMoiety.cpp:117:17: warning: unused variable 'pObject' [-Wunused-variable] CDataObject * pObject = addObjectReference("Amount", mIAmount, CDataObject::ValueDbl); ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 37%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:2355: warning: ignoring #pragma region [-Wunknown-pragmas] #pragma region //find_experiment /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:2405: warning: ignoring #pragma endregion [-Wunknown-pragmas] #pragma endregion //find_experiment /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp: In member function 'bool CModel::handleUnusedMetabolites()': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:749:23: warning: variable 'pStoiEnd' set but not used [-Wunused-but-set-variable] C_FLOAT64 * pStoi, *pStoiEnd, *pRowEnd; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp: In function 'const CObjectInterface* getDependentOrNull(const std::map&, int)': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CModel.cpp:2343:22: warning: comparison of integer expressions of different signedness: 'const long unsigned int' and 'int' [-Wsign-compare] if (it->second == index) return it->first; ~~~~~~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 39%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CObjectLists.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 40%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/moieties/CMoietiesMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 39%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CState.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 40%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/moieties/CMoietiesTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 40%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/moieties/CMoietiesProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 40%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/CInternalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 39%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReactionInterface.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReactionInterface.cpp: In member function 'std::__cxx11::string CReactionInterface::getEffectiveKineticLawUnit() const': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReactionInterface.cpp:1423:10: warning: enumeration value 'Default' not handled in switch [-Wswitch] switch (getEffectiveKineticLawUnitType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 40%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/CLSODA.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 41%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/Cxerrwd.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 41%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/CLSODAR.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 41%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/common.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 39%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReaction.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReaction.cpp: In member function 'CIssue CReaction::compile()': /builddir/build/BUILD/COPASI-Build-184/copasi/model/CReaction.cpp:704:107: warning: operation on 'Role' may be undefined [-Wsequence-point] CFunctionParameter::Role Role = i == 1 ? CFunctionParameter::Role::SUBSTRATE : Role = CFunctionParameter::Role::PRODUCT; ~~~~~^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 41%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dcfode.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 42%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dewset.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 41%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dbnorm.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 42%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dfnorm.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 42%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dmnorm.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 42%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dintdy.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 43%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dprja.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 43%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dsolsy.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 43%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/drcheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 43%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/odepack++/dstoda.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 44%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptLogItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 44%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 43%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptItem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 44%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 44%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodCoranaWalk.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 44%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodDE.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 45%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodEP.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 45%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodGA.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 45%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodHookeJeeves.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 45%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodGASR.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 45%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodLevenbergMarquardt.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodLevenbergMarquardt.cpp: In member function 'virtual bool COptMethodLevenbergMarquardt::optimise()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodLevenbergMarquardt.cpp:126:28: warning: variable 'nrhs' set but not used [-Wunused-but-set-variable] C_INT dim, starts, info, nrhs; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 46%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodNelderMead.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 46%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPraxis.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 46%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPS.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPS.cpp: In member function 'bool COptMethodPS::reachedStdDeviation()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodPS.cpp:434:15: warning: unused variable 'pEnd' [-Wunused-variable] C_FLOAT64 * pEnd = pValue + mPopulationSize; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 46%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSA.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 46%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSRES.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 47%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodStatistics.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodStatistics.cpp: In member function 'virtual bool COptMethodStatistics::optimise()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodStatistics.cpp:88:8: warning: variable 'Continue' set but not used [-Wunused-but-set-variable] bool Continue = true; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 47%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp: In member function 'bool COptMethodSS::combination()': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp:838:13: warning: variable 'la' set but not used [-Wunused-but-set-variable] C_FLOAT64 la; // for orders of magnitude ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSS.cpp:845:22: warning: variable 'xprval' set but not used [-Wunused-but-set-variable] C_FLOAT64 xnewval, xprval; // to hold temp value of "parent" in go-beyond strategy ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 47%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptPopulationMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 47%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodSteepestDescent.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 47%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptMethodTruncatedNewton.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 48%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 48%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CPraxis.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 48%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CRealProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 48%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CRandomSearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 49%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/FminBrent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/FminBrent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/FminBrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 49%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In member function 'int CTruncatedNewton::lmqn_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, int*, int*, int*, double*, double*, double*, double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:443:13: warning: variable 'fold' set but not used [-Wunused-but-set-variable] C_FLOAT64 fold, oldf; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:447:9: warning: variable 'lhyr' set but not used [-Wunused-but-set-variable] C_INT lhyr; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:457:27: warning: variable 'fstop' set but not used [-Wunused-but-set-variable] C_FLOAT64 gnorm, ftest, fstop, pnorm, rteps, xnorm; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In member function 'int CTruncatedNewton::lmqnbc_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, double*, double*, int*, int*, int*, int*, double*, double*, double*, double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:842:13: warning: variable 'fold' set but not used [-Wunused-but-set-variable] C_FLOAT64 fold, oldf; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:847:9: warning: variable 'lhyr' set but not used [-Wunused-but-set-variable] C_INT lhyr; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:858:13: warning: variable 'fstop' set but not used [-Wunused-but-set-variable] C_FLOAT64 fstop, pnorm, rteps, xnorm; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In function 'int lsout_(int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:13: warning: variable 'ybnd' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:19: warning: variable 'ya' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:23: warning: variable 'yb' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:27: warning: variable 'yu' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2100:31: warning: variable 'yw' set but not used [-Wunused-but-set-variable] C_FLOAT64 ybnd, ya, yb, yu, yw; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp: In function 'int initp3_(double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*)': /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/CTruncatedNewton.cpp:2551:13: warning: variable 'cond' set but not used [-Wunused-but-set-variable] C_FLOAT64 cond; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 48%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/optimization/COptProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 49%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING 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make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 49%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperimentFileInfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 50%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperimentObjectMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 50%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o cd 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-Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plot/CPlotColors.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 49%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperiment.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperiment.cpp: In member function 'double CExperiment::getErrorMeanSD(const CObjectInterface*, const double&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CExperiment.cpp:1626:20: warning: unused variable 'pScale' [-Wunused-variable] const C_FLOAT64 *pScale = mScale.array() + it->second; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 51%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plot/COutputDefinitionVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 51%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml 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CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/randomGenerator/CPermutation.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 52%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/randomGenerator/CRandom.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory 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-pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/plot/CPlotSpecification.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 52%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/randomGenerator/Cr250.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 52%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CKeyFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 53%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReport.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReport.cpp: In member function 'virtual void CReport::output(const COutputInterface::Activity&)': /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReport.cpp:118:10: warning: enumeration value 'MONITORING' not handled in switch [-Wswitch] switch (activity) ^ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 53%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportBody.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 50%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CFitProblem.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CFitProblem.cpp: In member function 'virtual void CFitProblem::updateContainer(const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/parameterFitting/CFitProblem.cpp:1108:17: warning: variable 'pExp' set but not used [-Wunused-but-set-variable] CExperiment * pExp = NULL; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 53%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.cpp:30: /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.h: In constructor 'CReportDefinition::CReportDefinition(const CReportDefinition&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.h:63:20: warning: 'CReportDefinition::mPrecision' will be initialized after [-Wreorder] unsigned C_INT32 mPrecision; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.h:55:38: warning: 'std::vector CReportDefinition::mHeaderVector' [-Wreorder] std::vector mHeaderVector; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinition.cpp:87:1: warning: when initialized here [-Wreorder] CReportDefinition::CReportDefinition(const CReportDefinition & src, ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 53%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/CReportDefinitionVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 54%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/ConverterASTNode.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/ConverterASTNode.cpp: In member function 'void ConverterASTNode::setChildren(List*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/ConverterASTNode.cpp:47:20: warning: unused variable 'size' [-Wunused-variable] unsigned int size = mFunction->getNumChildren(); ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 52%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/report/COutputAssistant.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 54%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLIncompatibility.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 54%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 55%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 55%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/StdException.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 55%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/CSBMLunit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 55%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/CSBMLunitInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 54%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In function 'void addSymbolComponentToUnitDefinition(UnitDefinition*, CUnit::SymbolComponent&, const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:3591:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] if (unitKind != C_INVALID_INDEX) /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:3596:16: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] if (unitKind == C_INVALID_INDEX) /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In function 'void addInitialAssignmentsToModel(SBMLDocument*, std::map, Parameter*>&, const CDataModel&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:3936:11: warning: unused variable 'result' [-Wunused-variable] int result = doc->getModel()->addParameter(param); ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In member function 'bool CSBMLExporter::createSBMLDocument(CDataModel&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:4265:15: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp: In static member function 'static XMLNode* CSBMLExporter::createSBMLNotes(const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:8684:31: warning: unused variable 'tmp' [-Wunused-variable] int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", prefix); ^~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CSBMLExporter.cpp:8750:27: warning: unused variable 'tmp' [-Wunused-variable] int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", ""); ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 56%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/Expression2PresentationMML.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 56%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanMethod.cpp: In member function 'virtual void CScanItemRandom::step()': /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanMethod.cpp:321:22: warning: 'Value' may be used uninitialized in this function [-Wmaybe-uninitialized] *mpObjectValue = Value; ~~~~~~~~~~~~~~~^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 56%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbmlunit/Expression2PresentationMMLUnits.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 56%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 56%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/scan/CScanTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 54%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp: In member function 'void SBMLImporter::replaceAmountReferences(ConverterASTNode*, Model*, double, std::map&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp:5053:43: warning: variable 'pSpecies' set but not used [-Wunused-but-set-variable] ASTNode *pAvogadro = NULL, *pSpecies = NULL; ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp: In member function 'void SBMLImporter::applyConversionFactors()': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/SBMLImporter.cpp:10882:25: warning: variable 'pE' set but not used [-Wunused-but-set-variable] const CChemEqElement* pE = NULL; ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 57%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensTask.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensTask.cpp: In member function 'virtual bool CSensTask::process(const bool&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensTask.cpp:106:17: warning: unused variable 'pProblem' [-Wunused-variable] CSensProblem* pProblem = ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 57%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp: In static member function 'static void CSensProblem::copySensItemToParameterGroup(const CSensItem*, CCopasiParameterGroup*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:161:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!pg) return; if (!si) return; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:161:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!pg) return; if (!si) return; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp: In static member function 'static void CSensProblem::copyParameterGroupToSensItem(const CCopasiParameterGroup*, CSensItem*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:174:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!pg) return; if (!si) return; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensProblem.cpp:174:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!pg) return; if (!si) return; ^~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 57%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sensitivities/CSensMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 57%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CEigen.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 58%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 58%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCATask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 57%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp: In member function 'void CMCAMethod::calculateUnscaledElasticities(double)': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:220:32: warning: unused variable 'TransientDependencies' [-Wunused-variable] const CMathDependencyGraph & TransientDependencies = mpContainer->getTransientDependencies(); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:223:17: warning: unused variable 'pParticleFluxObjectEnd' [-Wunused-variable] CMathObject * pParticleFluxObjectEnd = pParticleFluxObject + numReacs; ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:225:17: warning: unused variable 'pSpeciesObjectEnd' [-Wunused-variable] CMathObject * pSpeciesObjectEnd = pSpeciesObjectStart + numMetabs; ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp: In member function 'bool CMCAMethod::scaleMCA(const bool&, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CMCAMethod.cpp:426:10: warning: unused variable 'numReacs' [-Wunused-variable] size_t numReacs = mpContainer->getParticleFluxes().size(); ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 53%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static REACTION_TYPE CCellDesignerImporter::reactionTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:4866:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static MODIFICATION_LINK_TYPE CCellDesignerImporter::modificationLinkTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:4954:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static MODIFICATION_TYPE CCellDesignerImporter::modificationTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:5022:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp: In static member function 'static SPECIES_MODIFICATION_TYPE CCellDesignerImporter::speciesModificationTypeToEnum(std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sbml/CCellDesignerImporter.cpp:10901:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 58%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CSteadyStateMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 58%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CSteadyStateProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 58%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'void CNewtonMethod::cleanup()': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:129:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (mIpiv) delete [] mIpiv; mIpiv = NULL; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:129:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (mIpiv) delete [] mIpiv; mIpiv = NULL; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'double CNewtonMethod::targetFunction()': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:615:13: warning: unused variable 'Number2Quantity' [-Wunused-variable] C_FLOAT64 Number2Quantity = mpContainer->getModel().getNumber2QuantityFactor(); ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'virtual bool CNewtonMethod::initialize(const CSteadyStateProblem*)': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:690:23: warning: variable 'pTrajectoryMethod' set but not used [-Wunused-but-set-variable] CTrajectoryMethod * pTrajectoryMethod = NULL; ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp: In member function 'size_t CNewtonMethod::solveAxEqB(const CMatrix&, CVector&, const CVectorCore&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CNewtonMethod.cpp:1027:17: warning: unused variable 'Number2Quantity' [-Wunused-variable] C_FLOAT64 Number2Quantity = mpContainer->getModel().getNumber2QuantityFactor(); ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/steadystate/CSteadyStateTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethod.cpp: In member function 'void CHybridMethod::calculateDerivative(CVectorCore&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethod.cpp:323:11: warning: unused variable 'bal' [-Wunused-variable] C_INT32 bal = 0; ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:60: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h: In constructor 'CHybridMethodODE45::CHybridMethodODE45(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:354:26: warning: 'CHybridMethodODE45::mSpeciesRateUpdateSequence' will be initialized after [-Wreorder] CCore::CUpdateSequence mSpeciesRateUpdateSequence; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:323:31: warning: 'CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus' [-Wreorder] CRungeKutta::RKMethodStatus mRKMethodStatus; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:78:1: warning: when initialized here [-Wreorder] CHybridMethodODE45::CHybridMethodODE45(const CDataContainer * pParent, ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:60: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h: In constructor 'CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:354:26: warning: 'CHybridMethodODE45::mSpeciesRateUpdateSequence' will be initialized after [-Wreorder] CCore::CUpdateSequence mSpeciesRateUpdateSequence; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.h:323:31: warning: 'CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus' [-Wreorder] CRungeKutta::RKMethodStatus mRKMethodStatus; ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridMethodODE45.cpp:136:1: warning: when initialized here [-Wreorder] CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45 & src, ^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 59%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionRKMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionRKMethod.cpp: In member function 'virtual void CHybridNextReactionRKMethod::integrateDeterministicPart(double)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CHybridNextReactionRKMethod.cpp:88:22: warning: unused variable 'react' [-Wunused-variable] CHybridStochFlag * react = NULL; ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRootFinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp: In member function 'void CRungeKutta::doOneStep()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:426:10: warning: unused variable 's' [-Wunused-variable] size_t s = mStage - 1; ^ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp: In member function 'void CRungeKutta::setInitialStepSize()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:705:13: warning: unused variable 'absT' [-Wunused-variable] C_FLOAT64 absT = fabs(mTLeft); ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp: In member function 'void CRungeKutta::checkRoots()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:797:15: warning: unused variable 'pLeftRoots' [-Wunused-variable] C_FLOAT64 * pLeftRoots = mRootValuesLeft; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CRungeKutta.cpp:800:15: warning: unused variable 'pRightRoots' [-Wunused-variable] C_FLOAT64 * pRightRoots = mRootValueRight; ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h: In constructor 'CLsodaMethod2::CLsodaMethod2(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:247:9: warning: 'CLsodaMethod2::mNumRoots' will be initialized after [-Wreorder] C_INT mNumRoots; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:187:13: warning: 'double CLsodaMethod2::mTime' [-Wreorder] C_FLOAT64 mTime; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:23:1: warning: when initialized here [-Wreorder] CLsodaMethod2::CLsodaMethod2(const CDataContainer * pParent, ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h: In constructor 'CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:247:9: warning: 'CLsodaMethod2::mNumRoots' will be initialized after [-Wreorder] C_INT mNumRoots; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.h:187:13: warning: 'double CLsodaMethod2::mTime' [-Wreorder] C_FLOAT64 mTime; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:56:1: warning: when initialized here [-Wreorder] CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2 & src, ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp: In member function 'virtual CTrajectoryMethod::Status CLsodaMethod2::step(const double&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CLsodaMethod2.cpp:145:13: warning: unused variable 'StartTime' [-Wunused-variable] C_FLOAT64 StartTime = mTime; ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 60%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochDirectMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochNextReactionMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTauLeapMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTauLeapMethod.cpp: In member function 'bool CTauLeapMethod::updateSystem()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTauLeapMethod.cpp:360:21: warning: unused variable 'pKEnd' [-Wunused-variable] const C_FLOAT64 * pKEnd = pK + mNumReactions; ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochasticRungeKuttaRI5.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochasticRungeKuttaRI5.cpp: In member function 'void CStochasticRungeKuttaRI5::generateRandomNumbers()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:456:15: warning: unused variable 'pRandomMatrix' [-Wunused-variable] C_FLOAT64 * pRandomMatrix = mRandomIMatrix.array(); ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 61%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTimeSeries.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTimeSeries.cpp: In member function 'virtual bool CTimeSeries::compile(CObjectInterface::ContainerList)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTimeSeries.cpp:176:14: warning: enumeration value 'Undefined' not handled in switch [-Wswitch] switch (pObject->getSimulationType()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:29: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h: In constructor 'CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: 'CTrajAdaptiveSA::mNumReactionSpecies' will be initialized after [-Wreorder] size_t mNumReactionSpecies; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: 'unsigned int CTrajAdaptiveSA::mMaxSteps' [-Wreorder] unsigned C_INT32 mMaxSteps; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:39:1: warning: when initialized here [-Wreorder] CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer * pParent, ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:29: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h: In constructor 'CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: 'CTrajAdaptiveSA::mNumReactionSpecies' will be initialized after [-Wreorder] size_t mNumReactionSpecies; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: 'unsigned int CTrajAdaptiveSA::mMaxSteps' [-Wreorder] unsigned C_INT32 mMaxSteps; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajAdaptiveSA.cpp:65:1: warning: when initialized here [-Wreorder] CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA & src, ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:33: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h: In constructor 'CTrajectoryProblem::CTrajectoryProblem(const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:188:10: warning: 'CTrajectoryProblem::mpAutomaticStepSize' will be initialized after [-Wreorder] bool * mpAutomaticStepSize; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:183:15: warning: 'double* CTrajectoryProblem::mpDuration' [-Wreorder] C_FLOAT64 * mpDuration; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:42:1: warning: when initialized here [-Wreorder] CTrajectoryProblem::CTrajectoryProblem(const CDataContainer * pParent): ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:33: /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h: In constructor 'CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem&, const CDataContainer*)': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:188:10: warning: 'CTrajectoryProblem::mpAutomaticStepSize' will be initialized after [-Wreorder] bool * mpAutomaticStepSize; ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.h:183:15: warning: 'double* CTrajectoryProblem::mpDuration' [-Wreorder] C_FLOAT64 * mpDuration; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryProblem.cpp:63:1: warning: when initialized here [-Wreorder] CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem & src, ^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp: In member function 'virtual void CTrajectoryMethodDsaLsodar::start()': /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:495:3: warning: 'pUpdateSequence' may be used uninitialized in this function [-Wmaybe-uninitialized] for (; pReaction != pReactionEnd; ++pReaction, ++pUpdateSequence, ++pPropensityObject, ++pAmu) ^~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 62%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/trajectory/CTrajectoryTask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporterBM.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporterXPPAUT.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tss/CODEExporterC.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::mat_anal_mod_space(int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:402:9: warning: variable 'fast' set but not used [-Wunused-but-set-variable] C_INT fast; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::mat_anal_fast_space(int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:460:9: warning: variable 'fast' set but not used [-Wunused-but-set-variable] C_INT fast; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::mat_anal_fast_space_thomas(int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:518:9: warning: variable 'fast' set but not used [-Wunused-but-set-variable] C_INT fast; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp: In member function 'void CTSSAMethod::sylvester(int, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAMethod.cpp:1640:9: warning: variable 'flag_sylvester' set but not used [-Wunused-but-set-variable] C_INT flag_sylvester; ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp: In member function 'virtual void CILDMMethod::step(const double&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:103:9: warning: variable 'flag_jacob' set but not used [-Wunused-but-set-variable] C_INT flag_jacob; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:218:9: warning: variable 'flag_schur' set but not used [-Wunused-but-set-variable] C_INT flag_schur; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp: In member function 'void CILDMMethod::deuflhard(int&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:881:9: warning: variable 'flag_deufl' set but not used [-Wunused-but-set-variable] C_INT flag_deufl; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMMethod.cpp:1024:13: warning: variable 'max1' set but not used [-Wunused-but-set-variable] C_FLOAT64 max1; ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'virtual void CILDMModifiedMethod::step(const double&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:112:9: warning: variable 'flag_jacob' set but not used [-Wunused-but-set-variable] C_INT flag_jacob; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:174:9: warning: variable 'flag_deufl' set but not used [-Wunused-but-set-variable] C_INT flag_deufl; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:219:9: warning: variable 'flag_schur' set but not used [-Wunused-but-set-variable] C_INT flag_schur; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'void CILDMModifiedMethod::deuflhard_metab(int&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:503:9: warning: variable 'flag_deufl' set but not used [-Wunused-but-set-variable] C_INT flag_deufl; ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'void CILDMModifiedMethod::newton_new(int*, int&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:615:25: warning: variable 'flag_newton' set but not used [-Wunused-but-set-variable] C_INT nrhs, ok, fast, flag_newton; ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function 'void CILDMModifiedMethod::newton_for_timestep(int, double&, int&)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CILDMModifiedMethod.cpp:843:27: warning: variable 'flag_newton' set but not used [-Wunused-but-set-variable] C_INT i, iter, itermax, flag_newton; ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp: In member function 'int CCSPMethod::isBlockDiagonal(int&, int&, CMatrix&, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:15: warning: variable 'imax' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:21: warning: variable 'jmax' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:27: warning: variable 'imaxl' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CCSPMethod.cpp:928:34: warning: variable 'jmaxl' set but not used [-Wunused-but-set-variable] C_INT i, j, imax, jmax, imaxl, jmaxl; ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSAProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 64%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/tssanalysis/CTSSATask.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CDataValue.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CDataValue.cpp: In member function 'void CDataValue::assignData(const CDataValue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CDataValue.cpp:424:10: warning: enumeration value 'DATA_VALUES' not handled in switch [-Wswitch] switch (rhs.mType) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoStack.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 66%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBaseUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser_yacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 66%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBrent.cpp: In static member function 'static bool CBrent::findRoot(double, double, CBrent::Eval*, double*, double*, double)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CBrent.cpp:72:44: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] (!mflag && fabs(s - b) >= fabs(c - d) / 2.0) || ~~^~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 65%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In constructor 'CUndoData::CUndoData(const CUndoData::Type&, const CDataObject*, const size_t&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:49:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::addProperty(const string&, const CDataValue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:113:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::addProperty(const string&, const CDataValue&, const CDataValue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:142:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::isSetProperty(const string&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:181:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::appendData(const CData&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:204:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::appendData(const CData&, const CData&)': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:226:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::apply(const CDataModel&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:293:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::undo(const CDataModel&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:315:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'std::__cxx11::string CUndoData::getObjectDisplayName() const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:357:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:374:14: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'std::__cxx11::string CUndoData::getObjectType() const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:402:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'bool CUndoData::operator<(const CUndoData&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:421:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:459:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp: In member function 'const CData& CUndoData::getData(const bool&) const': /builddir/build/BUILD/COPASI-Build-184/copasi/undo/CUndoData.cpp:605:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] switch (mType) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 66%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiException.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 66%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser_lex.cpp CUnitParser_lex.cpp: In member function 'int CUnitParser::yy_get_next_buffer()': CUnitParser_lex.cpp:1320:44: warning: comparison of integer expressions of different signedness: 'int' and 'yy_size_t' {aka 'long unsigned int'} [-Wsign-compare] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 66%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMessage.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMessage.cpp:34: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const bool]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp: In static member function 'static CCopasiMethod* CCopasiMethod::createMethod(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'RandomSearchMaster' not handled in switch [-Wswitch] switch (methodType) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'HybridGASA' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'LSODA2' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value 'analyticsMethod' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiMethod.cpp:92:10: warning: enumeration value '__SIZE' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiParameterGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 67%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTaskStatus.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CDependencyGraph.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp:30: /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.h: In constructor 'CCopasiTask::CCopasiTask()': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.h:489:24: warning: 'CCopasiTask::mInitialState' will be initialized after [-Wreorder] CVector< C_FLOAT64 > mInitialState; ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.h:483:20: warning: 'CMathContainer* CCopasiTask::mpContainer' [-Wreorder] CMathContainer * mpContainer; ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp:91:1: warning: when initialized here [-Wreorder] CCopasiTask::CCopasiTask(): ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp: In member function 'virtual void CCopasiTask::separate(const COutputInterface::Activity&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CCopasiTask.cpp:449:12: warning: enumeration value 'MONITORING' not handled in switch [-Wswitch] switch (activity) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CIndexedPriorityQueue.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CProcessReport.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 68%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CDirEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CLinkMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CReadConfig.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 69%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION 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copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CParameterEstimationUtils.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CParameterEstimationUtils.cpp: In static member function 'static FittingItem* ResultParser::parseItem(const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CParameterEstimationUtils.cpp:470:16: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (firstLeq == -1) ~~~~~~~~~^~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CParameterEstimationUtils.cpp:477:14: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (square == -1) ~~~~~~~^~~~~ make[2]: Leaving directory 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-m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CTaskFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CTableCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o cd 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CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.cpp:8: /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.h: In constructor 'CUnitParserBase::CUnitParserBase()': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.h:81:20: warning: 'CUnitParserBase::mPosition' will be initialized after [-Wreorder] unsigned C_INT32 mPosition; ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.h:80:10: warning: 'CUnit* CUnitParserBase::mpUnit' [-Wreorder] CUnit *mpUnit; ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitParser.cpp:10:1: warning: when initialized here [-Wreorder] CUnitParserBase::CUnitParserBase(): ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT 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make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 70%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitDefinitionDB.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitDefinitionDB.cpp: In member function 'virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitDefinitionDB.cpp:38:21: warning: variable 'pCopy' set but not used [-Wunused-but-set-variable] CUnitDefinition * pCopy = NULL; ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp: In member function 'void CValidity::add(const CIssue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp:267:10: warning: enumeration value 'Success' not handled in switch [-Wswitch] switch (issue.getSeverity()) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp: In member function 'void CValidity::remove(const CIssue&)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CValidity.cpp:306:10: warning: enumeration value 'Success' not handled in switch [-Wswitch] switch (issue.getSeverity()) ^ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CVersion.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CluX.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 71%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CUnitValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 72%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/CopasiTime.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp: In function 'std::__cxx11::string ISODateTime(tm*)': /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp:43:20: warning: '%.02d' directive writing between 2 and 11 bytes into a region of size between 8 and 18 [-Wformat-overflow=] sprintf(str, "%d-%.02d-%.02d %.02d:%.02d:%.02d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp:43:20: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:861, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6361, from /usr/include/c++/8/string:52, from /builddir/build/BUILD/COPASI-Build-184/copasi/utilities/utility.cpp:23: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 72 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/CExpat.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/CFixLocalReactionParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/BoundingBoxHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/CCopasiXMLInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/AssignmentHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp: In member function 'CXMLHandler* CXMLHandlerFactory::createHandler(const CXMLHandler::Type&)': /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'AFTER' not handled in switch [-Wswitch] switch (type) ^ /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'BasePoint1' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'BasePoint2' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Body' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'CurveSegment' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'DelayExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'End' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Expression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Footer' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Header' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'InitialExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'MathML' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'NoiseExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Position' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'PriorityExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Problem' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Start' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Text' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'TriggerExpression' not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLHandlerFactory.cpp:126:10: warning: enumeration value 'Unit' not handled in switch [-Wswitch] make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 74%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/COPASIHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLParserData.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CallParameterHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CXMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 75%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ChannelSpecHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CharacterDataHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ColorDefinitionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CommentHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 76%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CompartmentHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ConstantHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CubicBezierHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/CurveHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/DimensionsHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 77%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/EllipseHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 73%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/CCopasiXML.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/GUIHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/GradientStopHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/EventHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/FunctionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ImageHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 78%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/GroupHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/InitialStateHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/LineSegmentHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/LineEndingHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/KineticLawHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 79%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/LayoutHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/LinearGradientHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 80%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ListOfCurveSegmentsHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ListOfHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ListOfLayoutsHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 81%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi 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CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModelParameterGroupHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModelParameterHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 82%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModelHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModelParameterSetHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModelValueHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o cd 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CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ModifierHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 83%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ObjectHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ParameterDescriptionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ParameterTextHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ParameterHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o cd 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CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/PlotItemHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 84%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ParameterGroupHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/PlotSpecificationHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/PointHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/PolygonHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ 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/builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ProductHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 85%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RadialGradientHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ReactionGlyphHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory 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-fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RenderCurveHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RectangleHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 86%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o -c 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ReactionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RenderInformationHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/RenderTextHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ReportSectionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ReportDefinitionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 87%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/ReportTargetHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/SBMLMapHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/SliderHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/SourceParameterHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 88%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/SubstrateHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/TableHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/StyleHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/UNKNOWNHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/TaskHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/UnitDefinitionHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 89%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/TextGlyphHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/xml/parser/UnsupportedAnnotationHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp: In member function 'void CSEDMLExporter::createSEDMLDocument(CDataModel&, std::__cxx11::string)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp:169:17: warning: unused variable 'pModel' [-Wunused-variable] const CModel* pModel = dataModel.getModel(); ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp:170:28: warning: unused variable 'plotDef' [-Wunused-variable] COutputDefinitionVector *plotDef = dataModel.getPlotDefinitionList(); ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp: In member function 'std::__cxx11::string CSEDMLExporter::createSteadyStateTask(CDataModel&, const string&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/CSEDMLExporter.cpp:380:23: warning: unused variable 'tProblem' [-Wunused-variable] CTrajectoryProblem* tProblem = static_cast(pTask->getProblem()); ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 91%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 90%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp: In member function 'void SEDMLImporter::readListOfPlotsFromSedMLOutput(COutputDefinitionVector*, CModel*, SedDocument*, std::map&)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp:268:41: warning: unused variable 'copasiMap' [-Wunused-variable] std::map& copasiMap = pModel->getObjectDataModel()->getCopasi2SBMLMap(); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp:270:28: warning: unused variable 'pReports' [-Wunused-variable] CReportDefinitionVector* pReports = mpDataModel->getReportDefinitionList(); ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp: In member function 'CModel* SEDMLImporter::importFirstSBMLModel(CProcessReport*, SBMLDocument*&, std::map&, CListOfLayouts*&, CDataModel*)': /builddir/build/BUILD/COPASI-Build-184/copasi/sedml/SEDMLImporter.cpp:956:12: warning: unused variable 'valueChanged' [-Wunused-variable] bool valueChanged = false; ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 92%] Built target libCOPASISE-core make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CMakeFiles/libCOPASISE-static.dir/DependInfo.cmake --color= Scanning dependencies of target libCOPASISE-static make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 92%] Linking CXX static library libCOPASISE.a cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi && /usr/bin/cmake -P CMakeFiles/libCOPASISE-static.dir/cmake_clean_target.cmake cd 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-I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example1.dir/example1.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example1/example1.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 92%] Building CXX object copasi/bindings/cpp_examples/example10/CMakeFiles/example10.dir/example10.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example10 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example10.dir/example10.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/example10.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/example10.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example10/example10.cpp:209:27: warning: unused variable 'pSSMethod' [-Wunused-variable] CSteadyStateMethod* pSSMethod = dynamic_cast(pSSTask->getMethod()); ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Building CXX object copasi/bindings/cpp_examples/assignParameterSet/CMakeFiles/assignParameterSet.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/assignParameterSet && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/assignParameterSet.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/main.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/assignParameterSet/main.cpp:71:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] bool result = false; ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Building CXX object copasi/bindings/cpp_examples/calculateSolutionStatistic/CMakeFiles/calculateSolutionStatistic.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/calculateSolutionStatistic && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/calculateSolutionStatistic.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp:128:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] bool result = false; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Linking CXX executable example1 cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example1 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example1.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example1.dir/example1.cpp.o -o example1 -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Linking CXX executable calculateSolutionStatistic cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/calculateSolutionStatistic && /usr/bin/cmake -E cmake_link_script CMakeFiles/calculateSolutionStatistic.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/calculateSolutionStatistic.dir/main.cpp.o -o calculateSolutionStatistic -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Linking CXX executable assignParameterSet cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/assignParameterSet && /usr/bin/cmake -E cmake_link_script CMakeFiles/assignParameterSet.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/assignParameterSet.dir/main.cpp.o -o assignParameterSet -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Built target calculateSolutionStatistic make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/build.make copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/depend make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Built target assignParameterSet make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/build.make copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Linking CXX executable example10 cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example10 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example10.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example10.dir/example10.cpp.o -o example10 -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Built target example10 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/build.make copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/depend make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 93%] Built target example1 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build.make copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example3 /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example3 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copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/build.make copasi/bindings/cpp_examples/example3/CMakeFiles/example3.dir/build /usr/bin/make -f copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/build.make copasi/bindings/cpp_examples/example4/CMakeFiles/example4.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example2 /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example2/CMakeFiles/example2.dir/DependInfo.cmake --color= Scanning dependencies of target example2 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example5.dir/example5.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp: In function 'int main()': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp:238:10: warning: unused variable 'bestValue' [-Wunused-variable] double bestValue = pOptProblem->getSolutionValue(); ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5/example5.cpp:243:10: warning: unused variable 'solution' [-Wunused-variable] double solution = pOptProblem->getSolutionVariables()[0]; ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Linking CXX executable example2 cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example2.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now 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Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/build.make copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6 /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example6 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/DependInfo.cmake --color= Scanning dependencies of target example6 make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Built target example2 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/build.make copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/build /usr/bin/make -f copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/build.make copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Linking CXX executable example4 cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example4 && /usr/bin/cmake -E cmake_link_script CMakeFiles/example4.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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/usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Built target example5 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/build.make copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Building CXX object copasi/bindings/cpp_examples/example7/CMakeFiles/example7.dir/example7.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example7 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example7.dir/example7.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/example7.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/example7.cpp: In function 'int main()': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/example7.cpp:128:14: warning: unused variable 'pRateLaw' [-Wunused-variable] CFunction* pRateLaw = dynamic_cast(pFunDB->findFunction("My Rate Law")); ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example7/example7.cpp:135:8: warning: unused variable 'result' [-Wunused-variable] bool result = pFunction->setInfix(formula); ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Building CXX object copasi/bindings/cpp_examples/example6/CMakeFiles/example6.dir/example6.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/example6.dir/example6.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/example6.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/example6.cpp: In function 'int main()': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example6/example6.cpp:276:15: warning: unused variable 'pFitMethod' [-Wunused-variable] COptMethod* pFitMethod = dynamic_cast(pFitTask->getMethod()); ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 95%] Building CXX object copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/example8.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example8 && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example8/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example8/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example8 -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/example7.dir/example7.cpp.o -o example7 -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends 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/usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 97%] Built target example9 make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build.make copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 96%] Building CXX object copasi/bindings/cpp_examples/printAffectedExperiments/CMakeFiles/printAffectedExperiments.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/printAffectedExperiments && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION 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-Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/printAffectedExperiments.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp:62:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] bool result = false; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 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-DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/printFluxModes.dir/printFluxModes.cpp.o -c 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-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/printAffectedExperiments.dir/main.cpp.o -o printAffectedExperiments -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 98%] Built target printAffectedExperiments make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build.make copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 97%] Linking CXX executable exportSedML cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/exportSedML && /usr/bin/cmake -E cmake_link_script CMakeFiles/exportSedML.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/exportSedML.dir/exportSedML.cpp.o -o exportSedML -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 98%] Built target exportSedML make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/depend cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/runSedML /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/DependInfo.cmake --color= Scanning dependencies of target runSedML make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build.make copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 99%] Building CXX object copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/runSedML.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/runSedML && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML/../../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/runSedML.dir/runSedML.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/renameActiveReport.dir/main.cpp.o -o renameActiveReport -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target renameActiveReport make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CopasiSE/CMakeFiles/CopasiSE.dir/DependInfo.cmake --color= Scanning dependencies of target CopasiSE make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 98%] Linking CXX executable printFluxModes cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/printFluxModes && /usr/bin/cmake -E cmake_link_script CMakeFiles/printFluxModes.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/printFluxModes.dir/printFluxModes.cpp.o -o printFluxModes -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target printFluxModes make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Building CXX object copasi/CopasiSE/CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CopasiSE && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -std=gnu++11 -o CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp:41: /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = bool]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = int]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = copasi::SBMLSchema_enum]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'bool COptions::COptionValue::compareValue(CType&) const [with CType = const std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:68:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) return (value == *(CType *) mpValue); ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h: In member function 'void COptions::COptionValue::getValue(CType&) const [with CType = std::__cxx11::basic_string]': /builddir/build/BUILD/COPASI-Build-184/copasi/commandline/COptions.h:62:7: warning: nonnull argument 'this' compared to NULL [-Wnonnull-compare] if (this && mpValue) value = *(CType *) mpValue; ^~ /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp: In function 'int exportSBML()': /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE/CopasiSE.cpp:643:27: warning: 'SBMLSchema' may be used uninitialized in this function [-Wmaybe-uninitialized] copasi::SBMLSchema_enum SBMLSchema; ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Linking CXX executable runSedML cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/runSedML && /usr/bin/cmake -E cmake_link_script CMakeFiles/runSedML.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/runSedML.dir/runSedML.cpp.o -o runSedML -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target runSedML make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Linking CXX executable CopasiSE cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CopasiSE && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSE.dir/link.txt --verbose=1 /usr/bin/c++ -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -rdynamic CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -o CopasiSE -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target CopasiSE make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 99%] Swig Python source cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../swig/ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../../ -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python -I/builddir/build/BUILD/COPASI-Build-184 -c++ -python -DLIBSBML_CPP_NAMESPACE_USE -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSEDML_CPP_NAMESPACE_USE -DLIBSEDML_CPP_NAMESPACE_BEGIN -DLIBSEDML_CPP_NAMESPACE_END -DUSE_CLAPACK -features autodoc,1 -o /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/python.i cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../common/patch-wrapper.cmake -- Patching C++ wrapper cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python" -DVERSION=4.23.184 -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Building CXX object copasi/bindings/python/CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python && /usr/bin/c++ -DCOPASI_BANDED_GRAPH -DCOPASI_EXTUNIT -DCOPASI_NONLIN_DYN_OSCILLATION -DCOPASI_PARAMETERFITTING_RESIDUAL_SCALING -DCOPASI_SEDML -DCOPASI_UNDO -DHAVE_CLAPACK_H -DHAVE_F2C_H -DLinux -DUSE_SBMLUNIT -DWITH_COMBINE_ARCHIVE -DWITH_MERGEMODEL -DWITH_PE_EVENT_CREATION -DWITH_SDE_SUPPORT -Dbinding_python_lib_EXPORTS -I/usr/include/sbml -I/usr/include/openblas -I/builddir/build/BUILD/COPASI-Build-184/copasi -I/builddir/build/BUILD/COPASI-Build-184/copasi/.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../../.. -I/builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/../swig -I/builddir/build/BUILD/COPASI-Build-184/src -I/usr/include/python3.7m -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -c /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CPlotDataChannelSpec; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CPlotDataChannelSpec; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CPlotDataChannelSpec]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CPlotDataChannelSpec; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CPlotDataChannelSpec; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:91441:34: required from here /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CPlotDataChannelSpec' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/bindings/common/downcast_common.cpp:17, from /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/local.cpp:21, from /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:4223: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/plot/CPlotItem.h:38:7: note: 'class CPlotDataChannelSpec' declared here class CPlotDataChannelSpec : public CRegisteredCommonName ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CRegisteredCommonName; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CRegisteredCommonName; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CRegisteredCommonName]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CRegisteredCommonName; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CRegisteredCommonName; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:107109:34: required from here /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CRegisteredCommonName' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataObjectReference.h:23, from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CDataContainer.h:227, from /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiDataModel/CDataModel.h:13, from /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/bindings/common/local_common.cpp:12, from /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python/local.cpp:20, from /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:4223: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/core/CRegisteredCommonName.h:11:7: note: 'class CRegisteredCommonName' declared here class CRegisteredCommonName: public CCommonName ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector >]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont > >; Seq = std::vector > >]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector > >; T = std::vector >; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector > >]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = std::vector >; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector > >; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasimake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /bindings/python/copasi_wrapper.cpp:124908:34: required from here /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector >' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:3032: /usr/include/c++/8/bits/stl_vector.h:339:11: note: 'class std::vector >' declared here class vector : protected _Vector_base<_Tp, _Alloc> ^~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CLPoint; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CLPoint; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CLPoint]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CLPoint; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CLPoint; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:132400:34: required from here /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CLPoint' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:7380: /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLBase.h:56:7: note: 'class CLPoint' declared here class CLPoint : public CLBase ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CLLineSegment; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CLLineSegment; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CLLineSegment]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CLLineSegment; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CLLineSegment; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:134270:34: required from here /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CLLineSegment' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:7381: /builddir/build/BUILD/COPASI-Build-184/copasi/layout/CLCurve.h:41:7: note: 'class CLLineSegment' declared here class CLLineSegment : public CLBase ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = CFluxMode; PyObject = _object]': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5670:64: required from 'Type swig::as(PyObject*, bool) [with Type = CFluxMode; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6614:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = CFluxMode]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6850:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6872:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = CFluxMode; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:6933:52: required from 'static int swig::traits_asptr > >::asptr(PyObject*, std::vector >**) [with T = CFluxMode; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5562:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:227677:34: required from here /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:5645:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class CFluxMode' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:7379: /builddir/build/BUILD/COPASI-Build-184/copasi/../copasi/elementaryFluxModes/CFluxMode.h:40:7: note: 'class CFluxMode' declared here class CFluxMode ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In function 'PyObject* _wrap_CCopasiTask_initializeRaw(PyObject*, PyObject*)': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:4675:25: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] return PyBool_FromLong(value ? 1 : 0); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:11347:14: note: 'success' was declared here bool success; ^~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp: In function 'PyObject* _wrap_CCopasiTask_processRaw(PyObject*, PyObject*)': /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:4675:25: warning: 'success' may be used uninitialized in this function [-Wmaybe-uninitialized] return PyBool_FromLong(value ? 1 : 0); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/copasi_wrapper.cpp:11393:14: note: 'success' was declared here bool success; ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Linking CXX shared library _COPASI.so cd /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -DF2C_INTEGER=int -DF2C_LOGICAL=long -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -fPIC -pie -Wl,-z,now -DCOPASI_OVERWRITE_USE_LAPACK -DNO_BLAS_WRAP -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -fPIC -pie -Wl,-z,now -pthread -shared -Wl,-soname,_COPASI.so -o _COPASI.so CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -L/builddir/build/BUILD/COPASI-Build-184/build2/copasi ../../libCOPASISE.a -lopenblas -lsbml -lraptor -lm -lcurl -lxml2 -lz -llzma -lm -ldl -lxslt -lxml2 -lm -lexpat -lsedml -lnuml /usr/lib64/libCombine-static.a -lpython3.7m -lcurl -lz -llzma -ldl -lxslt -lexpat -lz /usr/lib64/libsbml.so -lZipper -lnuml -lxml2 -lbz2 -lz -lm -ldl -lexpat make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build2/CMakeFiles 0 + popd ~/build/BUILD/COPASI-Build-184 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BnlKD6 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 ++ dirname /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 + cd COPASI-Build-184 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/cmake -H/builddir/build/BUILD/COPASI-Build-184 -B/builddir/build/BUILD/COPASI-Build-184/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build/CMakeFiles /builddir/build/BUILD/COPASI-Build-184/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi /builddir/build/BUILD/COPASI-Build-184/build/copasi/CMakeFiles/libCOPASISE-core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make 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/builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example5 /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example5 /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build.make copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/example5/CMakeFiles/example5.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 97%] Built target example5 /usr/bin/make 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'/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Built target binding_csharp_swig /usr/bin/make -f copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Built target binding_csharp_native_lib /usr/bin/make -f copasi/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make copasi/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/csharp /builddir/build/BUILD/COPASI-Build-184/build 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copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 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copasi/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [ 99%] Built target binding_perl_swig /usr/bin/make -f copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/perl /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target binding_perl_lib /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_swig.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R 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/builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_lib.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/bindings/R/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target binding_r_lib /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_package.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/bindings/R/CMakeFiles/binding_r_package.dir/build.make copasi/bindings/R/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Create R Package cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.R" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/patch-swig-file.cmake -- Patched COPASI.R cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.so /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI/inst/libs cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI.R /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI/R cd /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/R/create-r-package.cmake -- Created package: /builddir/build/BUILD/COPASI-Build-184/build/copasi/bindings/R/COPASI_4.23.184_R_powerpc64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target binding_r_package /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSE/CMakeFiles/CopasiSE.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target CopasiSE /usr/bin/make -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiUI /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiUI/CMakeFiles/CopasiUI.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target CopasiUI /usr/bin/make -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' cd /builddir/build/BUILD/COPASI-Build-184/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSBW /builddir/build/BUILD/COPASI-Build-184/build /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSBW /builddir/build/BUILD/COPASI-Build-184/build/copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/make -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[2]: Nothing to be done for 'copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' [100%] Built target CopasiSBW make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step1.html -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step2.html -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step3.html -- Installing: 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rm -rf /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python2.7/site-packages/copasi/examples + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 'INSTALL=/usr/bin/install -p' -C build2 make: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/cmake -H/builddir/build/BUILD/COPASI-Build-184 -B/builddir/build/BUILD/COPASI-Build-184/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build2/CMakeFiles /builddir/build/BUILD/COPASI-Build-184/build2/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && 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'/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/example8/CMakeFiles/example8.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 96%] Built target example8 /usr/bin/make -f copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/build.make copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/example9 /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example9 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/build.make copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/example9/CMakeFiles/example9.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 96%] Built target example9 /usr/bin/make -f copasi/bindings/cpp_examples/exportSedML/CMakeFiles/exportSedML.dir/build.make copasi/bindings/cpp_examples/exportSedML/CMakeFiles/exportSedML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/exportSedML 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copasi/bindings/cpp_examples/printAffectedExperiments/CMakeFiles/printAffectedExperiments.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printAffectedExperiments /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/printAffectedExperiments /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/printAffectedExperiments/CMakeFiles/printAffectedExperiments.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/printAffectedExperiments/CMakeFiles/printAffectedExperiments.dir/build.make copasi/bindings/cpp_examples/printAffectedExperiments/CMakeFiles/printAffectedExperiments.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/printAffectedExperiments/CMakeFiles/printAffectedExperiments.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 97%] Built target printAffectedExperiments /usr/bin/make -f copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/build.make copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/printFluxModes /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/printFluxModes /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/build.make copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/printFluxModes/CMakeFiles/printFluxModes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 98%] Built target printFluxModes /usr/bin/make -f copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build.make copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/renameActiveReport /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/renameActiveReport /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build.make copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/renameActiveReport/CMakeFiles/renameActiveReport.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 98%] Built target renameActiveReport /usr/bin/make -f copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build.make copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/cpp_examples/runSedML /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/runSedML /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build.make copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/cpp_examples/runSedML/CMakeFiles/runSedML.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 99%] Built target runSedML /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [ 99%] Built target binding_python_swig /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-184/build2/copasi/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target binding_python_lib /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/depend make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' cd /builddir/build/BUILD/COPASI-Build-184/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-184 /builddir/build/BUILD/COPASI-Build-184/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build2 /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-184/build2/copasi/CopasiSE/CMakeFiles/CopasiSE.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/make -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build make[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[2]: Nothing to be done for 'copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' [100%] Built target CopasiSE make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-184/build2/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-184/build2' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step1.html -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step2.html -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step3.html -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/doc/html/TutWiz-Step4.html -- Up-to-date: 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/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/DimericMWC-stiff.cps -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/Genetic-2000Elo.xml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/MAPK-HF96-layout.cps -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/Metabolism-2000Poo.xml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/NF-kappaB-model.xml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/NF-kappaB.cps -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/NF-kappaB.sedml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/Olsen2003_peroxidase.cps -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/YeastGlycolysis.gps -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/brusselator-model.xml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/brusselator.cps -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/brusselator.sedml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/oscli.xml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/examples/scan.sedml -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/icons/copasi/icons/Copasi.ico -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/icons/copasi/icons/CopasiDoc.ico -- Up-to-date: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/copasi/config/MIRIAMResources.xml -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/_COPASI.so -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi.pth -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/COPASI.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example1.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example2.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example3.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example4.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example5.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example6.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example7.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example8.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/example9.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/process_callback.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/restore_names.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/run_mca.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/to_local_parameters.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples/write_ids_to_names.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/bin/CopasiSE make: Leaving directory '/builddir/build/BUILD/COPASI-Build-184/build2' + rm -rf /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/examples + mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/R/library build/copasi/bindings/R/COPASI_4.23.184_R_powerpc64-redhat-linux-gnu.tar.gz * installing *binary* package 'COPASI' ... * DONE (COPASI) + test -d COPASI/src + rm -rf /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/R/library/COPASI/R.css + chmod a+x /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/R/library/COPASI/libs/COPASI.so + install -pm 644 copasi/UI/icons/Copasi48-Alpha.xpm /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/icons/copasi/icons + mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/applications + cat + mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/metainfo + install -pm 644 /builddir/build/SOURCES/COPASI.appdata.xml /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/metainfo/ + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 4.23.184-12.fc29 --unique-debug-suffix -4.23.184-12.fc29.ppc64 --unique-debug-src-base COPASI-4.23.184-12.fc29.ppc64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/COPASI-Build-184 extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/perl5/vendor_perl/auto/COPASI/COPASI.so extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/R/library/COPASI/libs/COPASI.so extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python2.7/site-packages/copasi/_COPASI.so extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7/site-packages/copasi/_COPASI.so extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib/mono/copasicsP/libcopasics.so extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/bin/CopasiSE extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/bin/CopasiUI extracting debug info from /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/bin/CopasiSBW dwz: ./usr/bin/CopasiUI-4.23.184-12.fc29.ppc64.debug: Couldn't find DIE referenced by DW_OP_GNU_parameter_ref /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. cpio: build/copasi/CChemEqParser.ypp: Cannot stat: No such file or directory cpio: build/copasi/CChemEqParser_lex.cpp: Cannot stat: No such file or directory cpio: build/copasi/CChemEqParser_yacc.cpp: Cannot stat: No such file or directory cpio: build/copasi/CEvaluationParser.ypp: Cannot stat: No such file or directory cpio: build/copasi/CEvaluationParser_yacc.cpp: Cannot stat: No such file or directory cpio: build/copasi/CUnitParser.ypp: Cannot stat: No such file or directory cpio: build/copasi/CUnitParser_lex.cpp: Cannot stat: No such file or directory cpio: build/copasi/CUnitParser_yacc.cpp: Cannot stat: No such file or directory cpio: build/copasi/function/CEvaluationLexer.lpp: Cannot stat: No such file or directory cpio: build/copasi/model/CChemEqParser.lpp: Cannot stat: No such file or directory cpio: build/copasi/utilities/CUnitParser.lpp: Cannot stat: No such file or directory cpio: build2/copasi/CChemEqParser.ypp: Cannot stat: No such file or directory cpio: build2/copasi/CChemEqParser_lex.cpp: Cannot stat: No such file or directory cpio: build2/copasi/CChemEqParser_yacc.cpp: Cannot stat: No such file or directory cpio: build2/copasi/CEvaluationParser.ypp: Cannot stat: No such file or directory cpio: build2/copasi/CEvaluationParser_yacc.cpp: Cannot stat: No such file or directory cpio: build2/copasi/CUnitParser.ypp: Cannot stat: No such file or directory cpio: build2/copasi/CUnitParser_lex.cpp: Cannot stat: No such file or directory cpio: build2/copasi/CUnitParser_yacc.cpp: Cannot stat: No such file or directory cpio: build2/copasi/function/CEvaluationLexer.lpp: Cannot stat: No such file or directory cpio: build2/copasi/model/CChemEqParser.lpp: Cannot stat: No such file or directory cpio: build2/copasi/utilities/CUnitParser.lpp: Cannot stat: No such file or directory 111247 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python3.7 using /usr/bin/python3.7 Bytecompiling .py files below /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib/debug/usr/lib64/python3.7 using /usr/bin/python3.7 Bytecompiling .py files below /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.olIQPE + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + desktop-file-validate /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/applications/COPASI.desktop + appstream-util validate-relax --nonet /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/metainfo/COPASI.appdata.xml /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/metainfo/COPASI.appdata.xml: GLib-GIO-Message: 11:58:24.594: Using the 'memory' GSettings backend. Your settings will not be saved or shared with other applications. OK + exit 0 Processing files: COPASI-4.23.184-12.fc29.ppc64 Provides: COPASI = 4.23.184-12.fc29 COPASI(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: COPASI-gui-4.23.184-12.fc29.ppc64 Provides: COPASI-gui = 4.23.184-12.fc29 COPASI-gui(ppc-64) = 4.23.184-12.fc29 application() application(COPASI.desktop) metainfo() metainfo(COPASI.appdata.xml) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5OpenGL.so.5()(64bit) libQt5OpenGL.so.5(Qt_5)(64bit) libQt5PrintSupport.so.5()(64bit) libQt5PrintSupport.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libQt5Xml.so.5()(64bit) libQt5Xml.so.5(Qt_5)(64bit) libSBW.so.2.11()(64bit) libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libmml.so.2()(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.3)(64bit) libqwt-qt5.so.6()(64bit) libqwtplot3d-qt5.so.0.3()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: COPASI-data-4.23.184-12.fc29.noarch Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FWsOTd + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: COPASI-data = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python2-COPASI-4.23.184-12.fc29.ppc64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.dGvZZM + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: python-COPASI = 4.23.184-12.fc29 python2-COPASI = 4.23.184-12.fc29 python2-COPASI(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.3)(64bit) libpython2.7.so.1.0()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Obsoletes: python-COPASI < 4.23.184-12.fc29 Processing files: python3-COPASI-4.23.184-12.fc29.ppc64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.mXJUmm + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: python3-COPASI = 4.23.184-12.fc29 python3-COPASI(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.3)(64bit) libpython3.7m.so.1.0()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) python(abi) = 3.7 rtld(GNU_HASH) Processing files: perl-COPASI-4.23.184-12.fc29.ppc64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.fJY1ZV + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: perl-COPASI = 4.23.184-12.fc29 perl-COPASI(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libperl.so.5.26()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-COPASI-4.23.184-12.fc29.ppc64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.D3bGTv + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: R-COPASI = 4.23.184-12.fc29 R-COPASI(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.3)(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: COPASI-sharp-4.23.184-12.fc29.ppc64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nS7XD6 + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: COPASI-sharp = 4.23.184-12.fc29 COPASI-sharp(ppc-64) = 4.23.184-12.fc29 libcopasics.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libZipper.so.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libexpat.so.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.3)(64bit) libnuml.so.1()(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.3)(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxslt.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: COPASI-doc-4.23.184-12.fc29.noarch Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.fIiWyH + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + cp -pr copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64/usr/share/licenses/COPASI + exit 0 Provides: COPASI-doc = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: COPASI-debugsource-4.23.184-12.fc29.ppc64 Provides: COPASI-debugsource = 4.23.184-12.fc29 COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: COPASI-debuginfo-4.23.184-12.fc29.ppc64 Provides: COPASI-debuginfo = 4.23.184-12.fc29 COPASI-debuginfo(ppc-64) = 4.23.184-12.fc29 debuginfo(build-id) = 086d2e21a4cd5ea49b2ae7cb1847442caab0061e Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Processing files: COPASI-gui-debuginfo-4.23.184-12.fc29.ppc64 Provides: COPASI-gui-debuginfo = 4.23.184-12.fc29 COPASI-gui-debuginfo(ppc-64) = 4.23.184-12.fc29 debuginfo(build-id) = 71436ea6a0d0627a32ee58eaff6579f2002d6f2a debuginfo(build-id) = d7cb496989322a6f2415693ad654a611254f78f0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Processing files: python2-COPASI-debuginfo-4.23.184-12.fc29.ppc64 Provides: debuginfo(build-id) = 9efd2acaaf9e3fa2a3b40c07f38a84796aebda8c python2-COPASI-debuginfo = 4.23.184-12.fc29 python2-COPASI-debuginfo(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Processing files: python3-COPASI-debuginfo-4.23.184-12.fc29.ppc64 Provides: debuginfo(build-id) = 6a973793f634e063c4858fe535823f25604d3fa3 python3-COPASI-debuginfo = 4.23.184-12.fc29 python3-COPASI-debuginfo(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Processing files: perl-COPASI-debuginfo-4.23.184-12.fc29.ppc64 Provides: debuginfo(build-id) = ef476282203e753d04da976c200cc61619c343f3 perl-COPASI-debuginfo = 4.23.184-12.fc29 perl-COPASI-debuginfo(ppc-64) = 4.23.184-12.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Processing files: R-COPASI-debuginfo-4.23.184-12.fc29.ppc64 Provides: R-COPASI-debuginfo = 4.23.184-12.fc29 R-COPASI-debuginfo(ppc-64) = 4.23.184-12.fc29 debuginfo(build-id) = 4cc790e9d45f5a974c7cc9ec1f8488d0d41e7e07 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Processing files: COPASI-sharp-debuginfo-4.23.184-12.fc29.ppc64 Provides: COPASI-sharp-debuginfo = 4.23.184-12.fc29 COPASI-sharp-debuginfo(ppc-64) = 4.23.184-12.fc29 debuginfo(build-id) = 665e8d621cdbce87ff382b8918c361d41c93c9a8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.23.184-12.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 Wrote: /builddir/build/RPMS/COPASI-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-gui-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-data-4.23.184-12.fc29.noarch.rpm Wrote: /builddir/build/RPMS/python2-COPASI-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/python3-COPASI-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/perl-COPASI-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/R-COPASI-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-sharp-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-doc-4.23.184-12.fc29.noarch.rpm Wrote: /builddir/build/RPMS/COPASI-debugsource-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-debuginfo-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-gui-debuginfo-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/python2-COPASI-debuginfo-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/python3-COPASI-debuginfo-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/perl-COPASI-debuginfo-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/R-COPASI-debuginfo-4.23.184-12.fc29.ppc64.rpm Wrote: /builddir/build/RPMS/COPASI-sharp-debuginfo-4.23.184-12.fc29.ppc64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.MYmOAB + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-184 + /usr/bin/rm -rf /builddir/build/BUILDROOT/COPASI-4.23.184-12.fc29.ppc64 + exit 0 Child return code was: 0