ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target noarch --nodeps builddir/build/SPECS/perl-bioperl.spec'], False, '/var/lib/mock/dist-f11-build-335651-61918/root/', None, 86400, True, 0, 101, 102, None, logger=) Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target noarch --nodeps builddir/build/SPECS/perl-bioperl.spec'] warning: Could not canonicalize hostname: x86-7.fedora.phx.redhat.com Building target platforms: noarch Building for target noarch Wrote: /builddir/build/SRPMS/perl-bioperl-1.6.0-1.fc11.src.rpm Child returncode was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target noarch --nodeps builddir/build/SPECS/perl-bioperl.spec'], False, '/var/lib/mock/dist-f11-build-335651-61918/root/', None, 86400, True, 0, 101, 102, None, logger=) Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target noarch --nodeps builddir/build/SPECS/perl-bioperl.spec'] Building target platforms: noarch Building for target noarch Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.IXUiLe + umask 022 + cd /builddir/build/BUILD + LANG=C + export LANG + unset DISPLAY + cd /builddir/build/BUILD + rm -rf BioPerl-1.6.0 + /usr/bin/bzip2 -dc /builddir/build/SOURCES/BioPerl-1.6.0.tar.bz2 + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd BioPerl-1.6.0 + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (bioperl-1.5.9-paths.patch):' Patch #0 (bioperl-1.5.9-paths.patch): + /bin/cat /builddir/build/SOURCES/bioperl-1.5.9-paths.patch + /usr/bin/patch -s -p1 --fuzz=0 + rm -r Bio/PhyloNetwork Bio/PhyloNetwork.pm + rm -r t/Tree/PhyloNetwork + find examples -type f -exec chmod -x '{}' ';' + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.aTX5BM + umask 022 + cd /builddir/build/BUILD + cd BioPerl-1.6.0 + LANG=C + export LANG + unset DISPLAY + /usr/bin/perl Build.PL --installdirs vendor Checking whether your kit is complete... Looks good Checking prerequisites... Install [a]ll optional external modules, [n]one, or choose [i]nteractively? [n] * Optional prerequisite Algorithm::Munkres is not installed (wanted for Phylogenetic Networks, used by Bio::PhyloNetwork) * Optional prerequisite Bio::ASN1::EntrezGene is not installed (wanted for parsing entrezgene, used by Bio::SeqIO::entrezgene [circular dependency!]) * Optional prerequisite Math::Random is not installed (wanted for Random Phylogenetic Networks, used by Bio::PhyloNetwork::RandomFactory) ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation * Could not connect to the internet (http://search.cpan.org/) Checking features: Network..................disabled BioDBSeqFeature_mysql....enabled BioDBGFF.................enabled BioDBSeqFeature_BDB......enabled Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests? y/n [n] Please answer 'y' or 'n'. Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests? y/n [n] - will not run the BioDBGFF or BioDBSeqFeature live database tests Install [a]ll Bioperl scripts, [n]one, or choose groups [i]nteractively? [a] - will install all scripts Creating new 'Build' script for 'BioPerl' version '1.006000' + ./Build Copying Bio/PopGen/MarkerI.pm -> blib/lib/Bio/PopGen/MarkerI.pm Copying Bio/Matrix/PSM/Psm.pm -> blib/lib/Bio/Matrix/PSM/Psm.pm Copying Bio/MolEvol/CodonModel.pm -> blib/lib/Bio/MolEvol/CodonModel.pm Copying Bio/Tools/Spidey/Exon.pm -> blib/lib/Bio/Tools/Spidey/Exon.pm Copying Bio/Matrix/PSM/ProtMatrix.pm -> blib/lib/Bio/Matrix/PSM/ProtMatrix.pm Copying Bio/WebAgent.pm -> blib/lib/Bio/WebAgent.pm Copying Bio/LiveSeq/ChainI.pm -> blib/lib/Bio/LiveSeq/ChainI.pm Copying Bio/AlignIO/mega.pm -> blib/lib/Bio/AlignIO/mega.pm Copying Bio/Tools/EUtilities/Info/LinkInfo.pm -> blib/lib/Bio/Tools/EUtilities/Info/LinkInfo.pm Copying Bio/LiveSeq/Mutation.pm -> blib/lib/Bio/LiveSeq/Mutation.pm Copying Bio/TreeIO/pag.pm -> blib/lib/Bio/TreeIO/pag.pm Copying Bio/Tools/HMMER/Set.pm -> blib/lib/Bio/Tools/HMMER/Set.pm Copying Bio/Map/PositionWithSequence.pm -> blib/lib/Bio/Map/PositionWithSequence.pm Copying Bio/SeqIO/chaos.pm -> blib/lib/Bio/SeqIO/chaos.pm Copying Bio/Factory/ObjectFactory.pm -> blib/lib/Bio/Factory/ObjectFactory.pm Copying Bio/DB/GFF/Aggregator/so_transcript.pm -> blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm Copying Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm -> blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm Copying Bio/SearchIO/megablast.pm -> blib/lib/Bio/SearchIO/megablast.pm Copying Bio/Factory/SeqAnalysisParserFactoryI.pm -> blib/lib/Bio/Factory/SeqAnalysisParserFactoryI.pm Copying Bio/TreeIO.pm -> blib/lib/Bio/TreeIO.pm Copying Bio/DB/GFF/Aggregator/ucsc_unigene.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm Copying Bio/Search/HSP/PSLHSP.pm -> blib/lib/Bio/Search/HSP/PSLHSP.pm Copying Bio/Cluster/UniGeneI.pm -> blib/lib/Bio/Cluster/UniGeneI.pm Copying Bio/DB/GFF/Aggregator/ucsc_acembly.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm Copying Bio/Map/Physical.pm -> blib/lib/Bio/Map/Physical.pm Copying Bio/Tools/GuessSeqFormat.pm -> blib/lib/Bio/Tools/GuessSeqFormat.pm Copying Bio/Search/Result/HmmpfamResult.pm -> blib/lib/Bio/Search/Result/HmmpfamResult.pm Copying Bio/Biblio/PubmedBookArticle.pm -> blib/lib/Bio/Biblio/PubmedBookArticle.pm Copying Bio/Search/HSP/WABAHSP.pm -> blib/lib/Bio/Search/HSP/WABAHSP.pm Copying Bio/Align/Utilities.pm -> blib/lib/Bio/Align/Utilities.pm Copying Bio/Tools/Run/ParametersI.pm -> blib/lib/Bio/Tools/Run/ParametersI.pm Copying Bio/Expression/ProbeI.pm -> blib/lib/Bio/Expression/ProbeI.pm Copying Bio/DB/Flat.pm -> blib/lib/Bio/DB/Flat.pm Copying Bio/SeqFeature/Lite.pm -> blib/lib/Bio/SeqFeature/Lite.pm Copying Bio/DB/SwissProt.pm -> blib/lib/Bio/DB/SwissProt.pm Copying Bio/SearchIO/fasta.pm -> blib/lib/Bio/SearchIO/fasta.pm Copying Bio/Tools/EUtilities/Query/GlobalQuery.pm -> blib/lib/Bio/Tools/EUtilities/Query/GlobalQuery.pm Copying Bio/TreeIO/nexus.pm -> blib/lib/Bio/TreeIO/nexus.pm Copying Bio/Biblio/Provider.pm -> blib/lib/Bio/Biblio/Provider.pm Copying Bio/Coordinate/Graph.pm -> blib/lib/Bio/Coordinate/Graph.pm Copying Bio/Search/HSP/ModelHSP.pm -> blib/lib/Bio/Search/HSP/ModelHSP.pm Copying Bio/Tree/DistanceFactory.pm -> blib/lib/Bio/Tree/DistanceFactory.pm Copying Bio/DB/GFF/Aggregator/ucsc_sanger22.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm Copying Bio/SeqIO/tinyseq/tinyseqHandler.pm -> blib/lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm Copying Bio/LocationI.pm -> blib/lib/Bio/LocationI.pm Copying Bio/Root/RootI.pm -> blib/lib/Bio/Root/RootI.pm Copying Bio/Taxonomy.pm -> blib/lib/Bio/Taxonomy.pm Copying Bio/Matrix/PSM/PsmI.pm -> blib/lib/Bio/Matrix/PSM/PsmI.pm Copying Bio/TreeIO/TreeEventBuilder.pm -> blib/lib/Bio/TreeIO/TreeEventBuilder.pm Copying Bio/DBLinkContainerI.pm -> blib/lib/Bio/DBLinkContainerI.pm Copying Bio/Location/Fuzzy.pm -> blib/lib/Bio/Location/Fuzzy.pm Copying Bio/SeqIO.pm -> blib/lib/Bio/SeqIO.pm Copying Bio/FeatureIO/bed.pm -> blib/lib/Bio/FeatureIO/bed.pm Copying Bio/AnalysisI.pm -> blib/lib/Bio/AnalysisI.pm Copying Bio/LiveSeq/AARange.pm -> blib/lib/Bio/LiveSeq/AARange.pm Copying Bio/DB/Biblio/biofetch.pm -> blib/lib/Bio/DB/Biblio/biofetch.pm Copying Bio/Index/Swissprot.pm -> blib/lib/Bio/Index/Swissprot.pm Copying Bio/Annotation/Ontolog yTerm.pm -> blib/lib/Bio/Annotation/OntologyTerm.pm Copying Bio/Map/SimpleMap.pm -> blib/lib/Bio/Map/SimpleMap.pm Copying Bio/Coordinate/Result/Gap.pm -> blib/lib/Bio/Coordinate/Result/Gap.pm Copying Bio/Tools/TandemRepeatsFinder.pm -> blib/lib/Bio/Tools/TandemRepeatsFinder.pm Copying Bio/Seq/Meta/Array.pm -> blib/lib/Bio/Seq/Meta/Array.pm Copying Bio/Tools/Run/RemoteBlast.pm -> blib/lib/Bio/Tools/Run/RemoteBlast.pm Copying Bio/DB/BiblioI.pm -> blib/lib/Bio/DB/BiblioI.pm Copying Bio/FeatureIO.pm -> blib/lib/Bio/FeatureIO.pm Copying Bio/MapIO.pm -> blib/lib/Bio/MapIO.pm Copying Bio/Map/Clone.pm -> blib/lib/Bio/Map/Clone.pm Copying Bio/SearchIO/Writer/HSPTableWriter.pm -> blib/lib/Bio/SearchIO/Writer/HSPTableWriter.pm Copying Bio/SearchIO/blasttable.pm -> blib/lib/Bio/SearchIO/blasttable.pm Copying Bio/Expression/DataSet.pm -> blib/lib/Bio/Expression/DataSet.pm Copying Bio/SeqFeature/Collection.pm -> blib/lib/Bio/SeqFeature/Collection.pm Copying Bio/DB/Expression/geo.pm -> blib/lib/Bio/DB/Expression/geo.pm Copying Bio/Tree/TreeI.pm -> blib/lib/Bio/Tree/TreeI.pm Copying Bio/Index/BlastTable.pm -> blib/lib/Bio/Index/BlastTable.pm Copying Bio/Map/MappableI.pm -> blib/lib/Bio/Map/MappableI.pm Copying Bio/Seq/BaseSeqProcessor.pm -> blib/lib/Bio/Seq/BaseSeqProcessor.pm Copying Bio/PullParserI.pm -> blib/lib/Bio/PullParserI.pm Copying Bio/SeqIO/fastq.pm -> blib/lib/Bio/SeqIO/fastq.pm Copying Bio/LiveSeq/SeqI.pm -> blib/lib/Bio/LiveSeq/SeqI.pm Copying Bio/Restriction/IO/prototype.pm -> blib/lib/Bio/Restriction/IO/prototype.pm Copying Bio/Tools/Analysis/Protein/ELM.pm -> blib/lib/Bio/Tools/Analysis/Protein/ELM.pm Copying Bio/Phenotype/Phenotype.pm -> blib/lib/Bio/Phenotype/Phenotype.pm Copying Bio/Seq/TraceI.pm -> blib/lib/Bio/Seq/TraceI.pm Copying Bio/Seq/PrimaryQual.pm -> blib/lib/Bio/Seq/PrimaryQual.pm Copying Bio/DB/Failover.pm -> blib/lib/Bio/DB/Failover.pm Copying Bio/Map/CytoMap.pm -> blib/lib/Bio/Map/CytoMap.pm Copying Bio/Variation/Allele.pm -> blib/lib/Bio/Variation/Allele.pm Copying Bio/LiveSeq/IO/Loader.pm -> blib/lib/Bio/LiveSeq/IO/Loader.pm Copying Bio/Search/Hit/PsiBlastHit.pm -> blib/lib/Bio/Search/Hit/PsiBlastHit.pm Copying Bio/LiveSeq/Repeat_Unit.pm -> blib/lib/Bio/LiveSeq/Repeat_Unit.pm Copying Bio/Restriction/Enzyme/MultiCut.pm -> blib/lib/Bio/Restriction/Enzyme/MultiCut.pm Copying Bio/DB/GFF/Adaptor/memory.pm -> blib/lib/Bio/DB/GFF/Adaptor/memory.pm Copying Bio/DB/UpdateableSeqI.pm -> blib/lib/Bio/DB/UpdateableSeqI.pm Copying Bio/Annotation/Target.pm -> blib/lib/Bio/Annotation/Target.pm Copying Bio/Restriction/IO/base.pm -> blib/lib/Bio/Restriction/IO/base.pm Copying Bio/DB/RefSeq.pm -> blib/lib/Bio/DB/RefSeq.pm Copying Bio/DB/GFF/Adaptor/memory/iterator.pm -> blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm Copying Bio/Tools/RepeatMasker.pm -> blib/lib/Bio/Tools/RepeatMasker.pm Copying Bio/AlignIO/xmfa.pm -> blib/lib/Bio/AlignIO/xmfa.pm Copying Bio/FeatureIO/vecscreen_simple.pm -> blib/lib/Bio/FeatureIO/vecscreen_simple.pm Copying Bio/Coordinate/Result/Match.pm -> blib/lib/Bio/Coordinate/Result/Match.pm Copying Bio/Search/Result/HMMERResult.pm -> blib/lib/Bio/Search/Result/HMMERResult.pm Copying Bio/SearchIO/wise.pm -> blib/lib/Bio/SearchIO/wise.pm Copying Bio/Seq/PrimedSeq.pm -> blib/lib/Bio/Seq/PrimedSeq.pm Copying Bio/Tools/RNAMotif.pm -> blib/lib/Bio/Tools/RNAMotif.pm Copying Bio/Structure/Chain.pm -> blib/lib/Bio/Structure/Chain.pm Copying Bio/DB/TFBS.pm -> blib/lib/Bio/DB/TFBS.pm Copying Bio/AlignIO/prodom.pm -> blib/lib/Bio/AlignIO/prodom.pm Copying Bio/Assembly/ContigAnalysis.pm -> blib/lib/Bio/Assembly/ContigAnalysis.pm Copying Bio/Root/Test.pm -> blib/lib/Bio/Root/Test.pm Copying Bio/Coordinate/ExtrapolatingPair.pm -> blib/lib/Bio/Coordinate/ExtrapolatingPair.pm Copying Bio/Ontology/DocumentRegistry.pm -> blib/lib/Bio/Ontology/DocumentRegistry.pm Copying Bio/SimpleAnalysisI.pm -> blib/lib/Bio/SimpleAnalysisI.pm Copying Bio/IdCollectionI.pm -> blib/lib/Bio/IdCollectionI.pm Copying Bio/Tools/Gel.pm -> blib/lib/Bio/Tools/Gel.pm Copying Bio/Tree/AlleleNode.pm -> blib/lib/Bio/Tree/AlleleNode.pm Copying Bio/ DB/NCBIHelper.pm -> blib/lib/Bio/DB/NCBIHelper.pm Copying Bio/Biblio/BiblioBase.pm -> blib/lib/Bio/Biblio/BiblioBase.pm Copying Bio/Biblio/IO.pm -> blib/lib/Bio/Biblio/IO.pm Copying Bio/Root/Build.pm -> blib/lib/Bio/Root/Build.pm Copying Bio/Map/FPCMarker.pm -> blib/lib/Bio/Map/FPCMarker.pm Copying Bio/DB/GFF/Feature.pm -> blib/lib/Bio/DB/GFF/Feature.pm Copying Bio/Phenotype/OMIM/MiniMIMentry.pm -> blib/lib/Bio/Phenotype/OMIM/MiniMIMentry.pm Copying Bio/UpdateableSeqI.pm -> blib/lib/Bio/UpdateableSeqI.pm Copying Bio/Tools/Phylo/PAML/ModelResult.pm -> blib/lib/Bio/Tools/Phylo/PAML/ModelResult.pm Copying Bio/Event/EventHandlerI.pm -> blib/lib/Bio/Event/EventHandlerI.pm Copying Bio/Biblio/Thesis.pm -> blib/lib/Bio/Biblio/Thesis.pm Copying Bio/DB/Fasta.pm -> blib/lib/Bio/DB/Fasta.pm Copying Bio/SeqIO/table.pm -> blib/lib/Bio/SeqIO/table.pm Copying Bio/Tools/EUtilities/Summary.pm -> blib/lib/Bio/Tools/EUtilities/Summary.pm Copying Bio/TreeIO/lintree.pm -> blib/lib/Bio/TreeIO/lintree.pm Copying Bio/Biblio.pm -> blib/lib/Bio/Biblio.pm Copying Bio/Phenotype/OMIM/OMIMparser.pm -> blib/lib/Bio/Phenotype/OMIM/OMIMparser.pm Copying Bio/DB/GFF/Adaptor/dbi/pg_fts.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm Copying Bio/Restriction/Enzyme.pm -> blib/lib/Bio/Restriction/Enzyme.pm Copying Bio/Matrix/PSM/InstanceSite.pm -> blib/lib/Bio/Matrix/PSM/InstanceSite.pm Copying Bio/SeqIO/game/seqHandler.pm -> blib/lib/Bio/SeqIO/game/seqHandler.pm Copying Bio/Assembly/Tools/ContigSpectrum.pm -> blib/lib/Bio/Assembly/Tools/ContigSpectrum.pm Copying Bio/Tree/TreeFunctionsI.pm -> blib/lib/Bio/Tree/TreeFunctionsI.pm Copying Bio/Matrix/MatrixI.pm -> blib/lib/Bio/Matrix/MatrixI.pm Copying Bio/SeqIO/largefasta.pm -> blib/lib/Bio/SeqIO/largefasta.pm Copying Bio/Annotation/SimpleValue.pm -> blib/lib/Bio/Annotation/SimpleValue.pm Copying Bio/AlignIO/emboss.pm -> blib/lib/Bio/AlignIO/emboss.pm Copying Bio/Align/AlignI.pm -> blib/lib/Bio/Align/AlignI.pm Copying Bio/Search/Result/BlastPullResult.pm -> blib/lib/Bio/Search/Result/BlastPullResult.pm Copying Bio/Tools/EUtilities/Cookie.pm -> blib/lib/Bio/Tools/EUtilities/Cookie.pm Copying Bio/DB/Query/WebQuery.pm -> blib/lib/Bio/DB/Query/WebQuery.pm Copying Bio/Ontology/OntologyI.pm -> blib/lib/Bio/Ontology/OntologyI.pm Copying Bio/SearchIO/hmmer.pm -> blib/lib/Bio/SearchIO/hmmer.pm Copying Bio/SeqIO/ctf.pm -> blib/lib/Bio/SeqIO/ctf.pm Copying Bio/Tools/SeqPattern.pm -> blib/lib/Bio/Tools/SeqPattern.pm Copying Bio/DB/GFF/Aggregator/gene.pm -> blib/lib/Bio/DB/GFF/Aggregator/gene.pm Copying Bio/DB/SeqFeature/Store/bdb.pm -> blib/lib/Bio/DB/SeqFeature/Store/bdb.pm Copying Bio/SearchIO/psl.pm -> blib/lib/Bio/SearchIO/psl.pm Copying Bio/LiveSeq/DNA.pm -> blib/lib/Bio/LiveSeq/DNA.pm Copying Bio/Map/EntityI.pm -> blib/lib/Bio/Map/EntityI.pm Copying Bio/Index/AbstractSeq.pm -> blib/lib/Bio/Index/AbstractSeq.pm Copying Bio/DB/SeqFeature/NormalizedFeatureI.pm -> blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm Copying Bio/AlignIO.pm -> blib/lib/Bio/AlignIO.pm Copying Bio/Tree/NodeI.pm -> blib/lib/Bio/Tree/NodeI.pm Copying Bio/SeqFeature/Gene/Exon.pm -> blib/lib/Bio/SeqFeature/Gene/Exon.pm Copying Bio/Tools/Prints.pm -> blib/lib/Bio/Tools/Prints.pm Copying Bio/Matrix/PSM/IO.pm -> blib/lib/Bio/Matrix/PSM/IO.pm Copying Bio/TreeIO/svggraph.pm -> blib/lib/Bio/TreeIO/svggraph.pm Copying Bio/Taxonomy/Tree.pm -> blib/lib/Bio/Taxonomy/Tree.pm Copying Bio/Ontology/RelationshipType.pm -> blib/lib/Bio/Ontology/RelationshipType.pm Copying Bio/Cluster/UniGene.pm -> blib/lib/Bio/Cluster/UniGene.pm Copying Bio/SeqIO/swissdriver.pm -> blib/lib/Bio/SeqIO/swissdriver.pm Copying Bio/CodonUsage/Table.pm -> blib/lib/Bio/CodonUsage/Table.pm Copying Bio/DB/ReferenceI.pm -> blib/lib/Bio/DB/ReferenceI.pm Copying Bio/SeqFeature/Generic.pm -> blib/lib/Bio/SeqFeature/Generic.pm Copying Bio/PopGen/PopulationI.pm -> blib/lib/Bio/PopGen/PopulationI.pm Copying Bio/SeqFeature/Annotated.pm -> blib/lib/Bio/SeqFeature/Annotated.pm Copying Bio/SearchIO/infernal.pm -> blib/lib/Bio/SearchIO/infernal.pm Copying Bio/SeqFeature/SimilarityPair.pm -> blib/lib/Bio/S eqFeature/SimilarityPair.pm Copying Bio/Search/Hit/BlastPullHit.pm -> blib/lib/Bio/Search/Hit/BlastPullHit.pm Copying Bio/SeqIO/raw.pm -> blib/lib/Bio/SeqIO/raw.pm Copying Bio/PopGen/TagHaplotype.pm -> blib/lib/Bio/PopGen/TagHaplotype.pm Copying Bio/Search/Processor.pm -> blib/lib/Bio/Search/Processor.pm Copying Bio/Tools/Analysis/Protein/GOR4.pm -> blib/lib/Bio/Tools/Analysis/Protein/GOR4.pm Copying Bio/Seq.pm -> blib/lib/Bio/Seq.pm Copying Bio/Tools/EUtilities/Info.pm -> blib/lib/Bio/Tools/EUtilities/Info.pm Copying Bio/Biblio/Article.pm -> blib/lib/Bio/Biblio/Article.pm Copying Bio/Tools/HMMER/Results.pm -> blib/lib/Bio/Tools/HMMER/Results.pm Copying Bio/Biblio/Organisation.pm -> blib/lib/Bio/Biblio/Organisation.pm Copying Bio/Search/BlastUtils.pm -> blib/lib/Bio/Search/BlastUtils.pm Copying Bio/Tree/RandomFactory.pm -> blib/lib/Bio/Tree/RandomFactory.pm Copying Bio/Structure/IO/pdb.pm -> blib/lib/Bio/Structure/IO/pdb.pm Copying Bio/Tools/Phylo/PAML/Result.pm -> blib/lib/Bio/Tools/Phylo/PAML/Result.pm Copying Bio/DescribableI.pm -> blib/lib/Bio/DescribableI.pm Copying Bio/Structure/StructureI.pm -> blib/lib/Bio/Structure/StructureI.pm Copying Bio/Search/Result/ResultI.pm -> blib/lib/Bio/Search/Result/ResultI.pm Copying Bio/Symbol/AlphabetI.pm -> blib/lib/Bio/Symbol/AlphabetI.pm Copying Bio/RangeI.pm -> blib/lib/Bio/RangeI.pm Copying Bio/Matrix/PSM/InstanceSiteI.pm -> blib/lib/Bio/Matrix/PSM/InstanceSiteI.pm Copying Bio/DB/SeqVersion/gi.pm -> blib/lib/Bio/DB/SeqVersion/gi.pm Copying Bio/Location/SplitLocationI.pm -> blib/lib/Bio/Location/SplitLocationI.pm Copying Bio/SeqFeature/Gene/NC_Feature.pm -> blib/lib/Bio/SeqFeature/Gene/NC_Feature.pm Copying Bio/SeqIO/metafasta.pm -> blib/lib/Bio/SeqIO/metafasta.pm Copying Bio/Tools/Phylo/Gerp.pm -> blib/lib/Bio/Tools/Phylo/Gerp.pm Copying Bio/SeqEvolution/EvolutionI.pm -> blib/lib/Bio/SeqEvolution/EvolutionI.pm Copying Bio/DB/HIV/HIVAnnotProcessor.pm -> blib/lib/Bio/DB/HIV/HIVAnnotProcessor.pm Copying Bio/OntologyIO.pm -> blib/lib/Bio/OntologyIO.pm Copying Bio/Ontology/RelationshipI.pm -> blib/lib/Bio/Ontology/RelationshipI.pm Copying Bio/Ontology/OBOterm.pm -> blib/lib/Bio/Ontology/OBOterm.pm Copying Bio/Search/HSP/PsiBlastHSP.pm -> blib/lib/Bio/Search/HSP/PsiBlastHSP.pm Copying Bio/SearchIO/rnamotif.pm -> blib/lib/Bio/SearchIO/rnamotif.pm Copying Bio/Index/GenBank.pm -> blib/lib/Bio/Index/GenBank.pm Copying Bio/Tools/EUtilities/EUtilDataI.pm -> blib/lib/Bio/Tools/EUtilities/EUtilDataI.pm Copying Bio/Restriction/IO/itype2.pm -> blib/lib/Bio/Restriction/IO/itype2.pm Copying Bio/Biblio/MedlineJournalArticle.pm -> blib/lib/Bio/Biblio/MedlineJournalArticle.pm Copying Bio/CodonUsage/IO.pm -> blib/lib/Bio/CodonUsage/IO.pm Copying Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm -> blib/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm Copying Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm Copying Bio/Expression/Platform.pm -> blib/lib/Bio/Expression/Platform.pm Copying Bio/Taxonomy/Node.pm -> blib/lib/Bio/Taxonomy/Node.pm Copying Bio/Variation/IO/xml.pm -> blib/lib/Bio/Variation/IO/xml.pm Copying Bio/DB/GFF/Aggregator/alignment.pm -> blib/lib/Bio/DB/GFF/Aggregator/alignment.pm Copying Bio/Matrix/Generic.pm -> blib/lib/Bio/Matrix/Generic.pm Copying Bio/FeatureHolderI.pm -> blib/lib/Bio/FeatureHolderI.pm Copying Bio/Tools/dpAlign.pm -> blib/lib/Bio/Tools/dpAlign.pm Copying Bio/AlignIO/Handler/GenericAlignHandler.pm -> blib/lib/Bio/AlignIO/Handler/GenericAlignHandler.pm Copying Bio/SeqFeature/Gene/TranscriptI.pm -> blib/lib/Bio/SeqFeature/Gene/TranscriptI.pm Copying Bio/Restriction/IO.pm -> blib/lib/Bio/Restriction/IO.pm Copying Bio/DB/SeqFeature/Store/FeatureFileLoader.pm -> blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm Copying Bio/Cluster/FamilyI.pm -> blib/lib/Bio/Cluster/FamilyI.pm Copying Bio/DB/RandomAccessI.pm -> blib/lib/Bio/DB/RandomAccessI.pm Copying Bio/SeqIO/qual.pm -> blib/lib/Bio/SeqIO/qual.pm Copying Bio/SeqIO/kegg.pm -> blib/lib/Bio/SeqIO/kegg.pm Copying Bio/SearchIO/axt.pm -> blib/lib/Bio/SearchIO/axt.pm Copy ing Bio/SeqIO/pln.pm -> blib/lib/Bio/SeqIO/pln.pm Copying Bio/Ontology/TermI.pm -> blib/lib/Bio/Ontology/TermI.pm Copying Bio/AnalysisResultI.pm -> blib/lib/Bio/AnalysisResultI.pm Copying Bio/Search/Result/BlastResult.pm -> blib/lib/Bio/Search/Result/BlastResult.pm Copying Bio/Map/PositionHandlerI.pm -> blib/lib/Bio/Map/PositionHandlerI.pm Copying Bio/PopGen/Simulation/Coalescent.pm -> blib/lib/Bio/PopGen/Simulation/Coalescent.pm Copying Bio/Assembly/ScaffoldI.pm -> blib/lib/Bio/Assembly/ScaffoldI.pm Copying Bio/Annotation/AnnotationFactory.pm -> blib/lib/Bio/Annotation/AnnotationFactory.pm Copying Bio/Taxon.pm -> blib/lib/Bio/Taxon.pm Copying Bio/SeqIO/locuslink.pm -> blib/lib/Bio/SeqIO/locuslink.pm Copying Bio/Phenotype/MeSH/Twig.pm -> blib/lib/Bio/Phenotype/MeSH/Twig.pm Copying Bio/Tools/Sim4/Exon.pm -> blib/lib/Bio/Tools/Sim4/Exon.pm Copying Bio/Structure/Atom.pm -> blib/lib/Bio/Structure/Atom.pm Copying Bio/PopGen/Genotype.pm -> blib/lib/Bio/PopGen/Genotype.pm Copying Bio/Tools/pICalculator.pm -> blib/lib/Bio/Tools/pICalculator.pm Copying Bio/Tools/Phylo/Molphy/Result.pm -> blib/lib/Bio/Tools/Phylo/Molphy/Result.pm Copying Bio/DB/GFF/Aggregator/match.pm -> blib/lib/Bio/DB/GFF/Aggregator/match.pm Copying Bio/DB/GFF/Aggregator/ucsc_softberry.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm Copying Bio/Map/PositionI.pm -> blib/lib/Bio/Map/PositionI.pm Copying Bio/Biblio/BookArticle.pm -> blib/lib/Bio/Biblio/BookArticle.pm Copying Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm Copying Bio/Restriction/IO/withrefm.pm -> blib/lib/Bio/Restriction/IO/withrefm.pm Copying Bio/DB/Flat/BDB/swiss.pm -> blib/lib/Bio/DB/Flat/BDB/swiss.pm Copying Bio/Tools/SeqStats.pm -> blib/lib/Bio/Tools/SeqStats.pm Copying Bio/LiveSeq/Transcript.pm -> blib/lib/Bio/LiveSeq/Transcript.pm Copying Bio/Ontology/OntologyEngineI.pm -> blib/lib/Bio/Ontology/OntologyEngineI.pm Copying Bio/Ontology/Term.pm -> blib/lib/Bio/Ontology/Term.pm Copying Bio/Search/HSP/FastaHSP.pm -> blib/lib/Bio/Search/HSP/FastaHSP.pm Copying Bio/Tools/Primer/Assessor/Base.pm -> blib/lib/Bio/Tools/Primer/Assessor/Base.pm Copying Bio/Tools/Match.pm -> blib/lib/Bio/Tools/Match.pm Copying Bio/DB/Taxonomy/list.pm -> blib/lib/Bio/DB/Taxonomy/list.pm Copying Bio/DB/Flat/BDB.pm -> blib/lib/Bio/DB/Flat/BDB.pm Copying Bio/AlignIO/mase.pm -> blib/lib/Bio/AlignIO/mase.pm Copying Bio/SeqFeature/Gene/Transcript.pm -> blib/lib/Bio/SeqFeature/Gene/Transcript.pm Copying Bio/SeqFeature/Tools/TypeMapper.pm -> blib/lib/Bio/SeqFeature/Tools/TypeMapper.pm Copying Bio/SeqIO/scf.pm -> blib/lib/Bio/SeqIO/scf.pm Copying Bio/MapIO/mapmaker.pm -> blib/lib/Bio/MapIO/mapmaker.pm Copying Bio/Ontology/OntologyStore.pm -> blib/lib/Bio/Ontology/OntologyStore.pm Copying Bio/OntologyIO/InterProParser.pm -> blib/lib/Bio/OntologyIO/InterProParser.pm Copying Bio/Taxonomy/FactoryI.pm -> blib/lib/Bio/Taxonomy/FactoryI.pm Copying Bio/DB/GFF/Adaptor/dbi/caching_handle.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm Copying Bio/Tools/Analysis/Protein/HNN.pm -> blib/lib/Bio/Tools/Analysis/Protein/HNN.pm Copying Bio/Location/Atomic.pm -> blib/lib/Bio/Location/Atomic.pm Copying Bio/Tree/Draw/Cladogram.pm -> blib/lib/Bio/Tree/Draw/Cladogram.pm Copying Bio/Ontology/Ontology.pm -> blib/lib/Bio/Ontology/Ontology.pm Copying Bio/PopGen/IO/prettybase.pm -> blib/lib/Bio/PopGen/IO/prettybase.pm Copying Bio/Tools/QRNA.pm -> blib/lib/Bio/Tools/QRNA.pm Copying Bio/SeqIO/fasta.pm -> blib/lib/Bio/SeqIO/fasta.pm Copying Bio/Root/Root.pm -> blib/lib/Bio/Root/Root.pm Copying Bio/DB/GFF/Aggregator/ucsc_twinscan.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm Copying Bio/SeqFeature/Similarity.pm -> blib/lib/Bio/SeqFeature/Similarity.pm Copying Bio/Tools/Sigcleave.pm -> blib/lib/Bio/Tools/Sigcleave.pm Copying Bio/Tools/EUtilities/Info/FieldInfo.pm -> blib/lib/Bio/Tools/EUtilities/Info/FieldInfo.pm Copying Bio/Restriction/EnzymeI.pm -> blib/lib/Bio/Restriction/EnzymeI.pm Copying Bio/Tools/Alignment/Consed.pm -> blib/lib/Bio/Tools/Alignment/Consed.pm Copying Bio/Tools/Alignment/Trim.pm -> b lib/lib/Bio/Tools/Alignment/Trim.pm Copying Bio/SearchIO/sim4.pm -> blib/lib/Bio/SearchIO/sim4.pm Copying Bio/Phenotype/OMIM/OMIMentry.pm -> blib/lib/Bio/Phenotype/OMIM/OMIMentry.pm Copying Bio/Map/MarkerI.pm -> blib/lib/Bio/Map/MarkerI.pm Copying Bio/SearchIO/waba.pm -> blib/lib/Bio/SearchIO/waba.pm Copying Bio/DB/Flat/BDB/genbank.pm -> blib/lib/Bio/DB/Flat/BDB/genbank.pm Copying Bio/DB/Taxonomy/entrez.pm -> blib/lib/Bio/DB/Taxonomy/entrez.pm Copying Bio/AlignIO/phylip.pm -> blib/lib/Bio/AlignIO/phylip.pm Copying Bio/Tools/ESTScan.pm -> blib/lib/Bio/Tools/ESTScan.pm Copying Bio/Variation/SeqDiff.pm -> blib/lib/Bio/Variation/SeqDiff.pm Copying Bio/DB/SeqFeature/Store.pm -> blib/lib/Bio/DB/SeqFeature/Store.pm Copying Bio/DB/BioFetch.pm -> blib/lib/Bio/DB/BioFetch.pm Copying Bio/SeqIO/phd.pm -> blib/lib/Bio/SeqIO/phd.pm Copying Bio/MapIO/fpc.pm -> blib/lib/Bio/MapIO/fpc.pm Copying Bio/Factory/LocationFactoryI.pm -> blib/lib/Bio/Factory/LocationFactoryI.pm Copying Bio/SeqFeature/AnnotationAdaptor.pm -> blib/lib/Bio/SeqFeature/AnnotationAdaptor.pm Copying Bio/SeqIO/embl.pm -> blib/lib/Bio/SeqIO/embl.pm Copying Bio/PopGen/IO/phase.pm -> blib/lib/Bio/PopGen/IO/phase.pm Copying Bio/SeqIO/tigr.pm -> blib/lib/Bio/SeqIO/tigr.pm Copying Bio/Biblio/IO/medline2ref.pm -> blib/lib/Bio/Biblio/IO/medline2ref.pm Copying Bio/SeqIO/asciitree.pm -> blib/lib/Bio/SeqIO/asciitree.pm Copying Bio/Index/Stockholm.pm -> blib/lib/Bio/Index/Stockholm.pm Copying Bio/Tools/AnalysisResult.pm -> blib/lib/Bio/Tools/AnalysisResult.pm Copying Bio/Biblio/Journal.pm -> blib/lib/Bio/Biblio/Journal.pm Copying Bio/SearchIO/erpin.pm -> blib/lib/Bio/SearchIO/erpin.pm Copying Bio/DB/GFF/Aggregator/transcript.pm -> blib/lib/Bio/DB/GFF/Aggregator/transcript.pm Copying Bio/Tools/Infernal.pm -> blib/lib/Bio/Tools/Infernal.pm Copying Bio/Search/HSP/GenericHSP.pm -> blib/lib/Bio/Search/HSP/GenericHSP.pm Copying Bio/Coordinate/Result.pm -> blib/lib/Bio/Coordinate/Result.pm Copying Bio/Biblio/PubmedJournalArticle.pm -> blib/lib/Bio/Biblio/PubmedJournalArticle.pm Copying Bio/Factory/DriverFactory.pm -> blib/lib/Bio/Factory/DriverFactory.pm Copying Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm -> blib/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm Copying Bio/PopGen/IO.pm -> blib/lib/Bio/PopGen/IO.pm Copying Bio/SeqAnalysisParserI.pm -> blib/lib/Bio/SeqAnalysisParserI.pm Copying Bio/Variation/RNAChange.pm -> blib/lib/Bio/Variation/RNAChange.pm Copying Bio/Map/Mappable.pm -> blib/lib/Bio/Map/Mappable.pm Copying Bio/SeqIO/agave.pm -> blib/lib/Bio/SeqIO/agave.pm Copying Bio/SearchIO.pm -> blib/lib/Bio/SearchIO.pm Copying Bio/AnalysisParserI.pm -> blib/lib/Bio/AnalysisParserI.pm Copying Bio/Factory/ObjectFactoryI.pm -> blib/lib/Bio/Factory/ObjectFactoryI.pm Copying Bio/Search/Result/WABAResult.pm -> blib/lib/Bio/Search/Result/WABAResult.pm Copying Bio/Matrix/PSM/IO/transfac.pm -> blib/lib/Bio/Matrix/PSM/IO/transfac.pm Copying Bio/Matrix/PSM/PsmHeader.pm -> blib/lib/Bio/Matrix/PSM/PsmHeader.pm Copying Bio/Tools/Analysis/Protein/Sopma.pm -> blib/lib/Bio/Tools/Analysis/Protein/Sopma.pm Copying Bio/Tree/Compatible.pm -> blib/lib/Bio/Tree/Compatible.pm Copying Bio/SearchDist.pm -> blib/lib/Bio/SearchDist.pm Copying Bio/Expression/FeatureGroup/FeatureGroupMas50.pm -> blib/lib/Bio/Expression/FeatureGroup/FeatureGroupMas50.pm Copying Bio/AlignIO/proda.pm -> blib/lib/Bio/AlignIO/proda.pm Copying Bio/Tools/ECnumber.pm -> blib/lib/Bio/Tools/ECnumber.pm Copying Bio/LiveSeq/Range.pm -> blib/lib/Bio/LiveSeq/Range.pm Copying Bio/Restriction/EnzymeCollection.pm -> blib/lib/Bio/Restriction/EnzymeCollection.pm Copying Bio/DB/GFF/Adaptor/berkeleydb.pm -> blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm Copying Bio/Matrix/IO/phylip.pm -> blib/lib/Bio/Matrix/IO/phylip.pm Copying Bio/Tools/Pseudowise.pm -> blib/lib/Bio/Tools/Pseudowise.pm Copying Bio/Tools/Genscan.pm -> blib/lib/Bio/Tools/Genscan.pm Copying Bio/OntologyIO/soflat.pm -> blib/lib/Bio/OntologyIO/soflat.pm Copying Bio/Tools/GFF.pm -> blib/lib/Bio/Tools/GFF.pm Copying Bio/DB/GFF/Util/Rearrange.pm -> blib/lib/Bio/DB/GFF/Util/Rearrange.pm Copying Bi o/AnnotationCollectionI.pm -> blib/lib/Bio/AnnotationCollectionI.pm Copying Bio/Das/SegmentI.pm -> blib/lib/Bio/Das/SegmentI.pm Copying Bio/SeqFeatureI.pm -> blib/lib/Bio/SeqFeatureI.pm Copying Bio/Das/FeatureTypeI.pm -> blib/lib/Bio/Das/FeatureTypeI.pm Copying Bio/Structure/Model.pm -> blib/lib/Bio/Structure/Model.pm Copying Bio/Restriction/Analysis.pm -> blib/lib/Bio/Restriction/Analysis.pm Copying Bio/Seq/SeqFastaSpeedFactory.pm -> blib/lib/Bio/Seq/SeqFastaSpeedFactory.pm Copying Bio/Tree/Node.pm -> blib/lib/Bio/Tree/Node.pm Copying Bio/LiveSeq/Repeat_Region.pm -> blib/lib/Bio/LiveSeq/Repeat_Region.pm Copying Bio/Tools/RandomDistFunctions.pm -> blib/lib/Bio/Tools/RandomDistFunctions.pm Copying Bio/Annotation/Reference.pm -> blib/lib/Bio/Annotation/Reference.pm Copying Bio/Coordinate/MapperI.pm -> blib/lib/Bio/Coordinate/MapperI.pm Copying Bio/Phenotype/MeSH/Term.pm -> blib/lib/Bio/Phenotype/MeSH/Term.pm Copying Bio/DB/WebDBSeqI.pm -> blib/lib/Bio/DB/WebDBSeqI.pm Copying Bio/TreeIO/tabtree.pm -> blib/lib/Bio/TreeIO/tabtree.pm Copying Bio/Tools/Primer3.pm -> blib/lib/Bio/Tools/Primer3.pm Copying Bio/DB/GFF/Adaptor/dbi/pg.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm Copying Bio/Ontology/OBOEngine.pm -> blib/lib/Bio/Ontology/OBOEngine.pm Copying Bio/Seq/SeqFactory.pm -> blib/lib/Bio/Seq/SeqFactory.pm Copying Bio/AlignIO/maf.pm -> blib/lib/Bio/AlignIO/maf.pm Copying Bio/Tools/Seg.pm -> blib/lib/Bio/Tools/Seg.pm Copying Bio/Search/Result/ResultFactory.pm -> blib/lib/Bio/Search/Result/ResultFactory.pm Copying Bio/ParameterBaseI.pm -> blib/lib/Bio/ParameterBaseI.pm Copying Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm -> blib/lib/Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm Copying Bio/Tools/Phylo/Phylip/ProtDist.pm -> blib/lib/Bio/Tools/Phylo/Phylip/ProtDist.pm Copying Bio/Map/GeneMap.pm -> blib/lib/Bio/Map/GeneMap.pm Copying Bio/SeqIO/genbank.pm -> blib/lib/Bio/SeqIO/genbank.pm Copying Bio/PrimarySeq.pm -> blib/lib/Bio/PrimarySeq.pm Copying Bio/AlignIO/pfam.pm -> blib/lib/Bio/AlignIO/pfam.pm Copying Bio/AlignIO/nexus.pm -> blib/lib/Bio/AlignIO/nexus.pm Copying Bio/DB/GFF/Aggregator/none.pm -> blib/lib/Bio/DB/GFF/Aggregator/none.pm Copying Bio/DB/GFF/Adaptor/dbi.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi.pm Copying Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm -> blib/lib/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm Copying Bio/Tools/Signalp.pm -> blib/lib/Bio/Tools/Signalp.pm Copying Bio/Location/CoordinatePolicyI.pm -> blib/lib/Bio/Location/CoordinatePolicyI.pm Copying Bio/Search/HSP/HmmpfamHSP.pm -> blib/lib/Bio/Search/HSP/HmmpfamHSP.pm Copying Bio/PopGen/Population.pm -> blib/lib/Bio/PopGen/Population.pm Copying Bio/SearchIO/Writer/GbrowseGFF.pm -> blib/lib/Bio/SearchIO/Writer/GbrowseGFF.pm Copying Bio/AlignIO/bl2seq.pm -> blib/lib/Bio/AlignIO/bl2seq.pm Copying Bio/Root/HTTPget.pm -> blib/lib/Bio/Root/HTTPget.pm Copying Bio/Assembly/Singlet.pm -> blib/lib/Bio/Assembly/Singlet.pm Copying Bio/Ontology/SimpleOntologyEngine.pm -> blib/lib/Bio/Ontology/SimpleOntologyEngine.pm Copying Bio/Ontology/PathI.pm -> blib/lib/Bio/Ontology/PathI.pm Copying Bio/Root/Storable.pm -> blib/lib/Bio/Root/Storable.pm Copying Bio/Variation/IO.pm -> blib/lib/Bio/Variation/IO.pm Copying Bio/DB/HIV/HIVQueryHelper.pm -> blib/lib/Bio/DB/HIV/HIVQueryHelper.pm Copying Bio/Map/Gene.pm -> blib/lib/Bio/Map/Gene.pm Copying Bio/AnnotationI.pm -> blib/lib/Bio/AnnotationI.pm Copying Bio/Restriction/IO/bairoch.pm -> blib/lib/Bio/Restriction/IO/bairoch.pm Copying Bio/Seq/LargePrimarySeq.pm -> blib/lib/Bio/Seq/LargePrimarySeq.pm Copying Bio/SeqIO/game/gameSubs.pm -> blib/lib/Bio/SeqIO/game/gameSubs.pm Copying Bio/SearchIO/Writer/BSMLResultWriter.pm -> blib/lib/Bio/SearchIO/Writer/BSMLResultWriter.pm Copying Bio/Annotation/Collection.pm -> blib/lib/Bio/Annotation/Collection.pm Copying Bio/Tools/IUPAC.pm -> blib/lib/Bio/Tools/IUPAC.pm Copying Bio/DB/Taxonomy/flatfile.pm -> blib/lib/Bio/DB/Taxonomy/flatfile.pm Copying Bio/SeqFeature/TypedSeqFeatureI.pm -> blib/lib/Bio/SeqFeature/TypedSeqFeatureI.pm Copying Bio/Tools/Spidey/Results.pm -> blib/lib/Bio/Tools/Sp idey/Results.pm Copying Bio/SeqIO/abi.pm -> blib/lib/Bio/SeqIO/abi.pm Copying Bio/DB/GFF/Aggregator/ucsc_refgene.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm Copying Bio/FeatureIO/interpro.pm -> blib/lib/Bio/FeatureIO/interpro.pm Copying Bio/AlignIO/msf.pm -> blib/lib/Bio/AlignIO/msf.pm Copying Bio/LiveSeq/Intron.pm -> blib/lib/Bio/LiveSeq/Intron.pm Copying Bio/DB/GFF/Aggregator/clone.pm -> blib/lib/Bio/DB/GFF/Aggregator/clone.pm Copying Bio/Map/Position.pm -> blib/lib/Bio/Map/Position.pm Copying Bio/PrimarySeqI.pm -> blib/lib/Bio/PrimarySeqI.pm Copying Bio/Tools/tRNAscanSE.pm -> blib/lib/Bio/Tools/tRNAscanSE.pm Copying Bio/LiveSeq/Gene.pm -> blib/lib/Bio/LiveSeq/Gene.pm Copying Bio/Ontology/Relationship.pm -> blib/lib/Bio/Ontology/Relationship.pm Copying Bio/Search/Hit/HitFactory.pm -> blib/lib/Bio/Search/Hit/HitFactory.pm Copying Bio/SearchIO/exonerate.pm -> blib/lib/Bio/SearchIO/exonerate.pm Copying Bio/FeatureIO/gff.pm -> blib/lib/Bio/FeatureIO/gff.pm Copying Bio/SimpleAlign.pm -> blib/lib/Bio/SimpleAlign.pm Copying Bio/Matrix/PSM/SiteMatrix.pm -> blib/lib/Bio/Matrix/PSM/SiteMatrix.pm Copying Bio/Expression/FeatureSet/FeatureSetMas50.pm -> blib/lib/Bio/Expression/FeatureSet/FeatureSetMas50.pm Copying Bio/Tools/Phylo/PAML.pm -> blib/lib/Bio/Tools/Phylo/PAML.pm Copying Bio/DB/SeqFeature.pm -> blib/lib/Bio/DB/SeqFeature.pm Copying Bio/SearchIO/XML/BlastHandler.pm -> blib/lib/Bio/SearchIO/XML/BlastHandler.pm Copying Bio/Factory/ApplicationFactoryI.pm -> blib/lib/Bio/Factory/ApplicationFactoryI.pm Copying Bio/Tools/EUtilities/EUtilParameters.pm -> blib/lib/Bio/Tools/EUtilities/EUtilParameters.pm Copying Bio/DB/GFF/Typename.pm -> blib/lib/Bio/DB/GFF/Typename.pm Copying Bio/Search/HSP/HSPFactory.pm -> blib/lib/Bio/Search/HSP/HSPFactory.pm Copying Bio/DB/GFF/Homol.pm -> blib/lib/Bio/DB/GFF/Homol.pm Copying Bio/Event/EventGeneratorI.pm -> blib/lib/Bio/Event/EventGeneratorI.pm Copying Bio/AlignIO/psi.pm -> blib/lib/Bio/AlignIO/psi.pm Copying Bio/DB/SeqVersion.pm -> blib/lib/Bio/DB/SeqVersion.pm Copying Bio/DB/Query/HIVQuery.pm -> blib/lib/Bio/DB/Query/HIVQuery.pm Copying Bio/Map/Microsatellite.pm -> blib/lib/Bio/Map/Microsatellite.pm Copying Bio/LiveSeq/Translation.pm -> blib/lib/Bio/LiveSeq/Translation.pm Copying Bio/Search/Hit/HitI.pm -> blib/lib/Bio/Search/Hit/HitI.pm Copying Bio/DB/SeqI.pm -> blib/lib/Bio/DB/SeqI.pm Copying Bio/Search/Iteration/GenericIteration.pm -> blib/lib/Bio/Search/Iteration/GenericIteration.pm Copying Bio/Index/SwissPfam.pm -> blib/lib/Bio/Index/SwissPfam.pm Copying Bio/DB/GenBank.pm -> blib/lib/Bio/DB/GenBank.pm Copying Bio/DB/Flat/BDB/fasta.pm -> blib/lib/Bio/DB/Flat/BDB/fasta.pm Copying Bio/Seq/SequenceTrace.pm -> blib/lib/Bio/Seq/SequenceTrace.pm Copying Bio/PopGen/IndividualI.pm -> blib/lib/Bio/PopGen/IndividualI.pm Copying Bio/DB/MeSH.pm -> blib/lib/Bio/DB/MeSH.pm Copying Bio/DB/GFF/Aggregator/coding.pm -> blib/lib/Bio/DB/GFF/Aggregator/coding.pm Copying Bio/Index/EMBL.pm -> blib/lib/Bio/Index/EMBL.pm Copying Bio/SeqFeature/Gene/GeneStructureI.pm -> blib/lib/Bio/SeqFeature/Gene/GeneStructureI.pm Copying Bio/ClusterIO.pm -> blib/lib/Bio/ClusterIO.pm Copying Bio/SeqIO/strider.pm -> blib/lib/Bio/SeqIO/strider.pm Copying Bio/DB/EMBL.pm -> blib/lib/Bio/DB/EMBL.pm Copying Bio/DB/DBFetch.pm -> blib/lib/Bio/DB/DBFetch.pm Copying Bio/DB/Taxonomy.pm -> blib/lib/Bio/DB/Taxonomy.pm Copying Bio/Matrix/Mlagan.pm -> blib/lib/Bio/Matrix/Mlagan.pm Copying Bio/Matrix/Scoring.pm -> blib/lib/Bio/Matrix/Scoring.pm Copying Bio/DB/SeqFeature/Store/LoadHelper.pm -> blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm Copying Bio/Map/CytoPosition.pm -> blib/lib/Bio/Map/CytoPosition.pm Copying Bio/Tools/SiRNA/Ruleset/tuschl.pm -> blib/lib/Bio/Tools/SiRNA/Ruleset/tuschl.pm Copying Bio/Tools/EUtilities/HistoryI.pm -> blib/lib/Bio/Tools/EUtilities/HistoryI.pm Copying Bio/Seq/Meta.pm -> blib/lib/Bio/Seq/Meta.pm Copying Bio/AlignIO/po.pm -> blib/lib/Bio/AlignIO/po.pm Copying Bio/Tools/SiRNA.pm -> blib/lib/Bio/Tools/SiRNA.pm Copying Bio/SeqIO/tigrxml.pm -> blib/lib/Bio/SeqIO/tigrxml.pm Copying Bio/Phenotype/Correlate.pm -> blib/lib/Bio/Phenotype/Correlate.pm Copying Bio/Tools/ERPIN.pm -> blib/lib/Bio/Tools/ERPIN.pm Copying Bio/SeqFeature/SiRNA/Oligo.pm -> blib/lib/Bio/SeqFeature/SiRNA/Oligo.pm Copying Bio/Assembly/IO/phrap.pm -> blib/lib/Bio/Assembly/IO/phrap.pm Copying Bio/Ontology/Path.pm -> blib/lib/Bio/Ontology/Path.pm Copying Bio/SeqFeature/Tools/Unflattener.pm -> blib/lib/Bio/SeqFeature/Tools/Unflattener.pm Copying Bio/LiveSeq/Prim_Transcript.pm -> blib/lib/Bio/LiveSeq/Prim_Transcript.pm Copying Bio/Tools/Promoterwise.pm -> blib/lib/Bio/Tools/Promoterwise.pm Copying Bio/Tools/Geneid.pm -> blib/lib/Bio/Tools/Geneid.pm Copying Bio/Root/Version.pm -> blib/lib/Bio/Root/Version.pm Copying Bio/Tree/NodeNHX.pm -> blib/lib/Bio/Tree/NodeNHX.pm Copying Bio/Tools/EUtilities/Link.pm -> blib/lib/Bio/Tools/EUtilities/Link.pm Copying Bio/AlignIO/clustalw.pm -> blib/lib/Bio/AlignIO/clustalw.pm Copying Bio/DB/Ace.pm -> blib/lib/Bio/DB/Ace.pm Copying Bio/DB/HIV.pm -> blib/lib/Bio/DB/HIV.pm Copying Bio/DB/GFF/Adaptor/dbi/mysql.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm Copying Bio/Factory/FTLocationFactory.pm -> blib/lib/Bio/Factory/FTLocationFactory.pm Copying Bio/SeqIO/interpro.pm -> blib/lib/Bio/SeqIO/interpro.pm Copying Bio/Search/HSP/PullHSPI.pm -> blib/lib/Bio/Search/HSP/PullHSPI.pm Copying Bio/Align/DNAStatistics.pm -> blib/lib/Bio/Align/DNAStatistics.pm Copying Bio/Coordinate/Utils.pm -> blib/lib/Bio/Coordinate/Utils.pm Copying Bio/LiveSeq/IO/BioPerl.pm -> blib/lib/Bio/LiveSeq/IO/BioPerl.pm Copying Bio/Variation/IO/flat.pm -> blib/lib/Bio/Variation/IO/flat.pm Copying Bio/SeqIO/chadoxml.pm -> blib/lib/Bio/SeqIO/chadoxml.pm Copying Bio/PopGen/PopStats.pm -> blib/lib/Bio/PopGen/PopStats.pm Copying Bio/Tools/Phylo/Gumby.pm -> blib/lib/Bio/Tools/Phylo/Gumby.pm Copying Bio/Biblio/Ref.pm -> blib/lib/Bio/Biblio/Ref.pm Copying Bio/DB/Query/GenBank.pm -> blib/lib/Bio/DB/Query/GenBank.pm Copying Bio/Search/GenericDatabase.pm -> blib/lib/Bio/Search/GenericDatabase.pm Copying Bio/TreeIO/cluster.pm -> blib/lib/Bio/TreeIO/cluster.pm Copying Bio/Seq/Quality.pm -> blib/lib/Bio/Seq/Quality.pm Copying Bio/DB/Expression.pm -> blib/lib/Bio/DB/Expression.pm Copying Bio/Factory/SequenceProcessorI.pm -> blib/lib/Bio/Factory/SequenceProcessorI.pm Copying Bio/Location/AvWithinCoordPolicy.pm -> blib/lib/Bio/Location/AvWithinCoordPolicy.pm Copying Bio/Search/BlastStatistics.pm -> blib/lib/Bio/Search/BlastStatistics.pm Copying Bio/Structure/SecStr/DSSP/Res.pm -> blib/lib/Bio/Structure/SecStr/DSSP/Res.pm Copying Bio/Biblio/TechReport.pm -> blib/lib/Bio/Biblio/TechReport.pm Copying Bio/SeqIO/gcg.pm -> blib/lib/Bio/SeqIO/gcg.pm Copying Bio/SeqIO/alf.pm -> blib/lib/Bio/SeqIO/alf.pm Copying Bio/SearchIO/SearchResultEventBuilder.pm -> blib/lib/Bio/SearchIO/SearchResultEventBuilder.pm Copying Bio/SeqI.pm -> blib/lib/Bio/SeqI.pm Copying Bio/Location/Simple.pm -> blib/lib/Bio/Location/Simple.pm Copying Bio/Seq/QualI.pm -> blib/lib/Bio/Seq/QualI.pm Copying Bio/Search/Hit/PullHitI.pm -> blib/lib/Bio/Search/Hit/PullHitI.pm Copying Bio/Tools/EUtilities/Link/UrlLink.pm -> blib/lib/Bio/Tools/EUtilities/Link/UrlLink.pm Copying Bio/Map/LinkagePosition.pm -> blib/lib/Bio/Map/LinkagePosition.pm Copying Bio/Search/StatisticsI.pm -> blib/lib/Bio/Search/StatisticsI.pm Copying Bio/Tools/SiRNA/Ruleset/saigo.pm -> blib/lib/Bio/Tools/SiRNA/Ruleset/saigo.pm Copying Bio/Matrix/PSM/IO/masta.pm -> blib/lib/Bio/Matrix/PSM/IO/masta.pm Copying Bio/Cluster/ClusterFactory.pm -> blib/lib/Bio/Cluster/ClusterFactory.pm Copying Bio/Map/Prediction.pm -> blib/lib/Bio/Map/Prediction.pm Copying Bio/PopGen/IO/csv.pm -> blib/lib/Bio/PopGen/IO/csv.pm Copying Bio/Tree/AnnotatableNode.pm -> blib/lib/Bio/Tree/AnnotatableNode.pm Copying Bio/Index/Qual.pm -> blib/lib/Bio/Index/Qual.pm Copying Bio/SeqFeature/Gene/Poly_A_site.pm -> blib/lib/Bio/SeqFeature/Gene/Poly_A_site.pm Copying Bio/Matrix/PSM/SiteMatrixI.pm -> blib/lib/Bio/Matrix/PSM/SiteMatrixI.pm Copying Bio/Annotation/Tree.pm -> blib/lib/Bio/Annotation/Tree.pm Copying Bio/SeqFeature/Gene/ExonI.pm -> blib/lib/Bio/SeqFeature/Gene/ExonI.pm Copying Bio/Tools/Run/Stan dAloneNCBIBlast.pm -> blib/lib/Bio/Tools/Run/StandAloneNCBIBlast.pm Copying Bio/DB/Qual.pm -> blib/lib/Bio/DB/Qual.pm Copying Bio/Tools/Fgenesh.pm -> blib/lib/Bio/Tools/Fgenesh.pm Copying Bio/Tools/Hmmpfam.pm -> blib/lib/Bio/Tools/Hmmpfam.pm Copying Bio/Expression/FeatureGroup.pm -> blib/lib/Bio/Expression/FeatureGroup.pm Copying Bio/DB/SeqFeature/NormalizedTableFeatureI.pm -> blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Copying Bio/DB/GFF/Aggregator/ucsc_genscan.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm Copying Bio/HandlerBaseI.pm -> blib/lib/Bio/HandlerBaseI.pm Copying Bio/Map/Contig.pm -> blib/lib/Bio/Map/Contig.pm Copying Bio/Ontology/InterProTerm.pm -> blib/lib/Bio/Ontology/InterProTerm.pm Copying Bio/IdentifiableI.pm -> blib/lib/Bio/IdentifiableI.pm Copying Bio/Assembly/IO/tigr.pm -> blib/lib/Bio/Assembly/IO/tigr.pm Copying Bio/Coordinate/Chain.pm -> blib/lib/Bio/Coordinate/Chain.pm Copying Bio/Align/ProteinStatistics.pm -> blib/lib/Bio/Align/ProteinStatistics.pm Copying Bio/Tools/Grail.pm -> blib/lib/Bio/Tools/Grail.pm Copying Bio/DB/InMemoryCache.pm -> blib/lib/Bio/DB/InMemoryCache.pm Copying Bio/PopGen/GenotypeI.pm -> blib/lib/Bio/PopGen/GenotypeI.pm Copying Bio/DB/EntrezGene.pm -> blib/lib/Bio/DB/EntrezGene.pm Copying Bio/DB/GFF/Segment.pm -> blib/lib/Bio/DB/GFF/Segment.pm Copying Bio/OntologyIO/goflat.pm -> blib/lib/Bio/OntologyIO/goflat.pm Copying Bio/DB/GFF/Adaptor/memory/feature_serializer.pm -> blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm Copying Bio/Symbol/DNAAlphabet.pm -> blib/lib/Bio/Symbol/DNAAlphabet.pm Copying Bio/Tools/Signalp/ExtendedSignalp.pm -> blib/lib/Bio/Tools/Signalp/ExtendedSignalp.pm Copying Bio/Root/Test/Warn.pm -> blib/lib/Bio/Root/Test/Warn.pm Copying Bio/DB/FileCache.pm -> blib/lib/Bio/DB/FileCache.pm Copying Bio/AlignIO/largemultifasta.pm -> blib/lib/Bio/AlignIO/largemultifasta.pm Copying Bio/DB/GFF/Util/Binning.pm -> blib/lib/Bio/DB/GFF/Util/Binning.pm Copying Bio/SearchIO/blast.pm -> blib/lib/Bio/SearchIO/blast.pm Copying Bio/DB/GFF/Adaptor/biofetch_oracle.pm -> blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm Copying Bio/Species.pm -> blib/lib/Bio/Species.pm Copying Bio/Tools/Primer/AssessorI.pm -> blib/lib/Bio/Tools/Primer/AssessorI.pm Copying Bio/Biblio/Person.pm -> blib/lib/Bio/Biblio/Person.pm Copying Bio/Map/Marker.pm -> blib/lib/Bio/Map/Marker.pm Copying Bio/DB/SeqHound.pm -> blib/lib/Bio/DB/SeqHound.pm Copying Bio/Matrix/PSM/PsmHeaderI.pm -> blib/lib/Bio/Matrix/PSM/PsmHeaderI.pm Copying Bio/Tools/CodonTable.pm -> blib/lib/Bio/Tools/CodonTable.pm Copying Bio/SeqIO/bsml.pm -> blib/lib/Bio/SeqIO/bsml.pm Copying Bio/DB/QueryI.pm -> blib/lib/Bio/DB/QueryI.pm Copying Bio/Tools/AlignFactory.pm -> blib/lib/Bio/Tools/AlignFactory.pm Copying Bio/Tools/EUtilities.pm -> blib/lib/Bio/Tools/EUtilities.pm Copying Bio/Tools/isPcr.pm -> blib/lib/Bio/Tools/isPcr.pm Copying Bio/DB/SeqFeature/Segment.pm -> blib/lib/Bio/DB/SeqFeature/Segment.pm Copying Bio/Annotation/DBLink.pm -> blib/lib/Bio/Annotation/DBLink.pm Copying Bio/Seq/SeqWithQuality.pm -> blib/lib/Bio/Seq/SeqWithQuality.pm Copying Bio/SearchIO/FastHitEventBuilder.pm -> blib/lib/Bio/SearchIO/FastHitEventBuilder.pm Copying Bio/Seq/LargeLocatableSeq.pm -> blib/lib/Bio/Seq/LargeLocatableSeq.pm Copying Bio/Search/Hit/BlastHit.pm -> blib/lib/Bio/Search/Hit/BlastHit.pm Copying Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm Copying Bio/Search/SearchUtils.pm -> blib/lib/Bio/Search/SearchUtils.pm Copying Bio/SeqFeature/Primer.pm -> blib/lib/Bio/SeqFeature/Primer.pm Copying Bio/Tools/Prediction/Gene.pm -> blib/lib/Bio/Tools/Prediction/Gene.pm Copying Bio/Variation/AAReverseMutate.pm -> blib/lib/Bio/Variation/AAReverseMutate.pm Copying Bio/AlignIO/fasta.pm -> blib/lib/Bio/AlignIO/fasta.pm Copying Bio/Biblio/WebResource.pm -> blib/lib/Bio/Biblio/WebResource.pm Copying Bio/Search/Hit/HMMERHit.pm -> blib/lib/Bio/Search/Hit/HMMERHit.pm Copying Bio/Tools/Phylo/Molphy.pm -> blib/lib/Bio/Tools/Phylo/Molphy.pm Copying Bio/Tools/Run/StandAloneBlast.pm -> blib/lib/Bio/Tools/Run/StandAloneBla st.pm Copying Bio/PopGen/Utilities.pm -> blib/lib/Bio/PopGen/Utilities.pm Copying Bio/OntologyIO/obo.pm -> blib/lib/Bio/OntologyIO/obo.pm Copying Bio/DB/EUtilities.pm -> blib/lib/Bio/DB/EUtilities.pm Copying Bio/Tools/MZEF.pm -> blib/lib/Bio/Tools/MZEF.pm Copying Bio/SearchIO/Writer/ResultTableWriter.pm -> blib/lib/Bio/SearchIO/Writer/ResultTableWriter.pm Copying Bio/Ontology/RelationshipFactory.pm -> blib/lib/Bio/Ontology/RelationshipFactory.pm Copying Bio/Tools/Primer/Feature.pm -> blib/lib/Bio/Tools/Primer/Feature.pm Copying Bio/SeqFeature/Tools/IDHandler.pm -> blib/lib/Bio/SeqFeature/Tools/IDHandler.pm Copying Bio/Seq/RichSeqI.pm -> blib/lib/Bio/Seq/RichSeqI.pm Copying Bio/Tools/Prediction/Exon.pm -> blib/lib/Bio/Tools/Prediction/Exon.pm Copying Bio/SearchIO/EventHandlerI.pm -> blib/lib/Bio/SearchIO/EventHandlerI.pm Copying Bio/SearchIO/Writer/HitTableWriter.pm -> blib/lib/Bio/SearchIO/Writer/HitTableWriter.pm Copying Bio/DB/GFF/Adaptor/biofetch.pm -> blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm Copying Bio/Search/HSP/HMMERHSP.pm -> blib/lib/Bio/Search/HSP/HMMERHSP.pm Copying Bio/Tools/Est2Genome.pm -> blib/lib/Bio/Tools/Est2Genome.pm Copying Bio/Variation/DNAMutation.pm -> blib/lib/Bio/Variation/DNAMutation.pm Copying Bio/Factory/MapFactoryI.pm -> blib/lib/Bio/Factory/MapFactoryI.pm Copying Bio/Tools/EUtilities/History.pm -> blib/lib/Bio/Tools/EUtilities/History.pm Copying Bio/Matrix/PSM/IO/psiblast.pm -> blib/lib/Bio/Matrix/PSM/IO/psiblast.pm Copying Bio/SeqIO/excel.pm -> blib/lib/Bio/SeqIO/excel.pm Copying Bio/Structure/IO.pm -> blib/lib/Bio/Structure/IO.pm Copying Bio/Tools/EMBOSS/Palindrome.pm -> blib/lib/Bio/Tools/EMBOSS/Palindrome.pm Copying Bio/Tree/Tree.pm -> blib/lib/Bio/Tree/Tree.pm Copying Bio/SeqIO/game/gameWriter.pm -> blib/lib/Bio/SeqIO/game/gameWriter.pm Copying Bio/Map/Relative.pm -> blib/lib/Bio/Map/Relative.pm Copying Bio/Factory/AnalysisI.pm -> blib/lib/Bio/Factory/AnalysisI.pm Copying Bio/SearchIO/SearchWriterI.pm -> blib/lib/Bio/SearchIO/SearchWriterI.pm Copying Bio/Tools/TargetP.pm -> blib/lib/Bio/Tools/TargetP.pm Copying Bio/Variation/SNP.pm -> blib/lib/Bio/Variation/SNP.pm Copying Bio/SeqFeature/Gene/Promoter.pm -> blib/lib/Bio/SeqFeature/Gene/Promoter.pm Copying Bio/SeqFeature/FeaturePair.pm -> blib/lib/Bio/SeqFeature/FeaturePair.pm Copying Bio/Location/Split.pm -> blib/lib/Bio/Location/Split.pm Copying Bio/SeqIO/exp.pm -> blib/lib/Bio/SeqIO/exp.pm Copying Bio/SeqIO/embldriver.pm -> blib/lib/Bio/SeqIO/embldriver.pm Copying Bio/Biblio/IO/pubmedxml.pm -> blib/lib/Bio/Biblio/IO/pubmedxml.pm Copying Bio/Search/Result/GenericResult.pm -> blib/lib/Bio/Search/Result/GenericResult.pm Copying Bio/Cluster/SequenceFamily.pm -> blib/lib/Bio/Cluster/SequenceFamily.pm Copying Bio/SeqIO/swiss.pm -> blib/lib/Bio/SeqIO/swiss.pm Copying Bio/Tools/Analysis/DNA/ESEfinder.pm -> blib/lib/Bio/Tools/Analysis/DNA/ESEfinder.pm Copying Bio/ClusterIO/unigene.pm -> blib/lib/Bio/ClusterIO/unigene.pm Copying Bio/Tools/PrositeScan.pm -> blib/lib/Bio/Tools/PrositeScan.pm Copying Bio/Annotation/StructuredValue.pm -> blib/lib/Bio/Annotation/StructuredValue.pm Copying Bio/DB/Flat/BinarySearch.pm -> blib/lib/Bio/DB/Flat/BinarySearch.pm Copying Bio/TreeIO/phyloxml.pm -> blib/lib/Bio/TreeIO/phyloxml.pm Copying Bio/Tools/FootPrinter.pm -> blib/lib/Bio/Tools/FootPrinter.pm Copying Bio/SeqIO/FTHelper.pm -> blib/lib/Bio/SeqIO/FTHelper.pm Copying Bio/Tools/Coil.pm -> blib/lib/Bio/Tools/Coil.pm Copying Bio/Restriction/Enzyme/MultiSite.pm -> blib/lib/Bio/Restriction/Enzyme/MultiSite.pm Copying Bio/Root/IO.pm -> blib/lib/Bio/Root/IO.pm Copying Bio/Coordinate/Collection.pm -> blib/lib/Bio/Coordinate/Collection.pm Copying Bio/SeqEvolution/DNAPoint.pm -> blib/lib/Bio/SeqEvolution/DNAPoint.pm Copying Bio/Tools/Lucy.pm -> blib/lib/Bio/Tools/Lucy.pm Copying Bio/Matrix/PSM/IO/mast.pm -> blib/lib/Bio/Matrix/PSM/IO/mast.pm Copying Bio/Biblio/MedlineBook.pm -> blib/lib/Bio/Biblio/MedlineBook.pm Copying Bio/Ontology/GOterm.pm -> blib/lib/Bio/Ontology/GOterm.pm Copying Bio/Symbol/Symbol.pm -> blib/lib/Bio/Symbol/Symbol.pm Copying Bio/SeqIO/entrezgene.pm -> blib/lib/Bio/SeqIO/entrezgene.pm Copying Bio/DB/SeqFeature/Store/DBI/mysql.pm -> blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm Copying Bio/DB/GFF/Featname.pm -> blib/lib/Bio/DB/GFF/Featname.pm Copying Bio/Tools/ipcress.pm -> blib/lib/Bio/Tools/ipcress.pm Copying Bio/Symbol/Alphabet.pm -> blib/lib/Bio/Symbol/Alphabet.pm Copying Bio/LocatableSeq.pm -> blib/lib/Bio/LocatableSeq.pm Copying Bio/DB/CUTG.pm -> blib/lib/Bio/DB/CUTG.pm Copying Bio/Matrix/IO/scoring.pm -> blib/lib/Bio/Matrix/IO/scoring.pm Copying Bio/SearchIO/blast_pull.pm -> blib/lib/Bio/SearchIO/blast_pull.pm Copying Bio/Factory/ObjectBuilderI.pm -> blib/lib/Bio/Factory/ObjectBuilderI.pm Copying Bio/DB/Biblio/eutils.pm -> blib/lib/Bio/DB/Biblio/eutils.pm Copying Bio/Matrix/IO/mlagan.pm -> blib/lib/Bio/Matrix/IO/mlagan.pm Copying Bio/DB/Universal.pm -> blib/lib/Bio/DB/Universal.pm Copying Bio/Search/Result/CrossMatchResult.pm -> blib/lib/Bio/Search/Result/CrossMatchResult.pm Copying Bio/SeqIO/ztr.pm -> blib/lib/Bio/SeqIO/ztr.pm Copying Bio/Structure/Entry.pm -> blib/lib/Bio/Structure/Entry.pm Copying Bio/Tools/OddCodes.pm -> blib/lib/Bio/Tools/OddCodes.pm Copying Bio/Matrix/PSM/IO/meme.pm -> blib/lib/Bio/Matrix/PSM/IO/meme.pm Copying Bio/Biblio/JournalArticle.pm -> blib/lib/Bio/Biblio/JournalArticle.pm Copying Bio/Coordinate/Pair.pm -> blib/lib/Bio/Coordinate/Pair.pm Copying Bio/DB/GFF/Aggregator/processed_transcript.pm -> blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm Copying Bio/Coordinate/ResultI.pm -> blib/lib/Bio/Coordinate/ResultI.pm Copying Bio/Tools/Primer/Pair.pm -> blib/lib/Bio/Tools/Primer/Pair.pm Copying Bio/PopGen/Statistics.pm -> blib/lib/Bio/PopGen/Statistics.pm Copying Bio/Tools/Analysis/SimpleAnalysisBase.pm -> blib/lib/Bio/Tools/Analysis/SimpleAnalysisBase.pm Copying Bio/Tools/Analysis/Protein/NetPhos.pm -> blib/lib/Bio/Tools/Analysis/Protein/NetPhos.pm Copying Bio/Tools/Analysis/Protein/Scansite.pm -> blib/lib/Bio/Tools/Analysis/Protein/Scansite.pm Copying Bio/ClusterI.pm -> blib/lib/Bio/ClusterI.pm Copying Bio/Index/Fasta.pm -> blib/lib/Bio/Index/Fasta.pm Copying Bio/Map/PositionHandler.pm -> blib/lib/Bio/Map/PositionHandler.pm Copying Bio/Align/StatisticsI.pm -> blib/lib/Bio/Align/StatisticsI.pm Copying Bio/SeqFeature/PositionProxy.pm -> blib/lib/Bio/SeqFeature/PositionProxy.pm Copying Bio/Map/GenePosition.pm -> blib/lib/Bio/Map/GenePosition.pm Copying Bio/DB/GFF/Adaptor/ace.pm -> blib/lib/Bio/DB/GFF/Adaptor/ace.pm Copying Bio/Structure/SecStr/STRIDE/Res.pm -> blib/lib/Bio/Structure/SecStr/STRIDE/Res.pm Copying Bio/Biblio/MedlineBookArticle.pm -> blib/lib/Bio/Biblio/MedlineBookArticle.pm Copying Bio/SearchIO/hmmer_pull.pm -> blib/lib/Bio/SearchIO/hmmer_pull.pm Copying Bio/Biblio/Patent.pm -> blib/lib/Bio/Biblio/Patent.pm Copying Bio/Tools/Genemark.pm -> blib/lib/Bio/Tools/Genemark.pm Copying Bio/Matrix/IO.pm -> blib/lib/Bio/Matrix/IO.pm Copying Bio/Map/GeneRelative.pm -> blib/lib/Bio/Map/GeneRelative.pm Copying Bio/Annotation/Relation.pm -> blib/lib/Bio/Annotation/Relation.pm Copying Bio/DB/GFF/Aggregator.pm -> blib/lib/Bio/DB/GFF/Aggregator.pm Copying Bio/Seq/RichSeq.pm -> blib/lib/Bio/Seq/RichSeq.pm Copying Bio/DB/GFF.pm -> blib/lib/Bio/DB/GFF.pm Copying Bio/SeqFeature/SiRNA/Pair.pm -> blib/lib/Bio/SeqFeature/SiRNA/Pair.pm Copying Bio/Search/Hit/HmmpfamHit.pm -> blib/lib/Bio/Search/Hit/HmmpfamHit.pm Copying Bio/PopGen/HtSNP.pm -> blib/lib/Bio/PopGen/HtSNP.pm Copying Bio/Annotation/TagTree.pm -> blib/lib/Bio/Annotation/TagTree.pm Copying Bio/PopGen/Simulation/GeneticDrift.pm -> blib/lib/Bio/PopGen/Simulation/GeneticDrift.pm Copying Bio/SeqFeature/CollectionI.pm -> blib/lib/Bio/SeqFeature/CollectionI.pm Copying Bio/Biblio/MedlineArticle.pm -> blib/lib/Bio/Biblio/MedlineArticle.pm Copying Bio/Tools/Run/StandAloneWUBlast.pm -> blib/lib/Bio/Tools/Run/StandAloneWUBlast.pm Copying Bio/Phenotype/PhenotypeI.pm -> blib/lib/Bio/Phenotype/PhenotypeI.pm Copying Bio/AlignIO/metafasta.pm -> blib/lib/Bio/AlignIO/metafasta.pm Copying Bio/Taxonomy/Taxon.pm -> blib/lib/Bio/Taxonomy/Taxon.pm Copying Bio/Seq/LargeSeq.pm -> blib/lib/Bio/Seq/LargeSeq.p m Copying Bio/Index/Hmmer.pm -> blib/lib/Bio/Index/Hmmer.pm Copying Bio/SearchIO/XML/PsiBlastHandler.pm -> blib/lib/Bio/SearchIO/XML/PsiBlastHandler.pm Copying Bio/Tools/EUtilities/Summary/DocSum.pm -> blib/lib/Bio/Tools/EUtilities/Summary/DocSum.pm Copying Bio/Tools/Profile.pm -> blib/lib/Bio/Tools/Profile.pm Copying Bio/DB/SeqFeature/Store/DBI/Iterator.pm -> blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm Copying Bio/Seq/EncodedSeq.pm -> blib/lib/Bio/Seq/EncodedSeq.pm Copying Bio/SeqIO/chaosxml.pm -> blib/lib/Bio/SeqIO/chaosxml.pm Copying Bio/Tools/Analysis/Protein/Domcut.pm -> blib/lib/Bio/Tools/Analysis/Protein/Domcut.pm Copying Bio/DB/Registry.pm -> blib/lib/Bio/DB/Registry.pm Copying Bio/Variation/VariantI.pm -> blib/lib/Bio/Variation/VariantI.pm Copying Bio/Tools/Glimmer.pm -> blib/lib/Bio/Tools/Glimmer.pm Copying Bio/Root/Utilities.pm -> blib/lib/Bio/Root/Utilities.pm Copying Bio/Factory/SequenceFactoryI.pm -> blib/lib/Bio/Factory/SequenceFactoryI.pm Copying Bio/DB/SeqFeature/Store/Loader.pm -> blib/lib/Bio/DB/SeqFeature/Store/Loader.pm Copying Bio/Search/Hit/GenericHit.pm -> blib/lib/Bio/Search/Hit/GenericHit.pm Copying Bio/Map/LinkageMap.pm -> blib/lib/Bio/Map/LinkageMap.pm Copying Bio/OntologyIO/Handlers/InterProHandler.pm -> blib/lib/Bio/OntologyIO/Handlers/InterProHandler.pm Copying Bio/AlignIO/stockholm.pm -> blib/lib/Bio/AlignIO/stockholm.pm Copying Bio/PopGen/Individual.pm -> blib/lib/Bio/PopGen/Individual.pm Copying Bio/DB/GFF/Adaptor/dbi/mysqlace.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlace.pm Copying Bio/Tools/EUtilities/Summary/Item.pm -> blib/lib/Bio/Tools/EUtilities/Summary/Item.pm Copying Bio/Seq/MetaI.pm -> blib/lib/Bio/Seq/MetaI.pm Copying Bio/SeqFeature/Computation.pm -> blib/lib/Bio/SeqFeature/Computation.pm Copying Bio/DasI.pm -> blib/lib/Bio/DasI.pm Copying Bio/Tools/Analysis/Protein/Mitoprot.pm -> blib/lib/Bio/Tools/Analysis/Protein/Mitoprot.pm Copying Bio/Search/Hit/ModelHit.pm -> blib/lib/Bio/Search/Hit/ModelHit.pm Copying Bio/OntologyIO/simplehierarchy.pm -> blib/lib/Bio/OntologyIO/simplehierarchy.pm Copying Bio/Assembly/Scaffold.pm -> blib/lib/Bio/Assembly/Scaffold.pm Copying Bio/Assembly/Contig.pm -> blib/lib/Bio/Assembly/Contig.pm Copying Bio/SeqUtils.pm -> blib/lib/Bio/SeqUtils.pm Copying Bio/TreeIO/nhx.pm -> blib/lib/Bio/TreeIO/nhx.pm Copying Bio/Structure/Residue.pm -> blib/lib/Bio/Structure/Residue.pm Copying Bio/DB/GFF/Adaptor/dbi/iterator.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm Copying Bio/Tools/Sim4/Results.pm -> blib/lib/Bio/Tools/Sim4/Results.pm Copying Bio/DB/GenericWebAgent.pm -> blib/lib/Bio/DB/GenericWebAgent.pm Copying Bio/OntologyIO/Handlers/BaseSAXHandler.pm -> blib/lib/Bio/OntologyIO/Handlers/BaseSAXHandler.pm Copying Bio/SeqEvolution/Factory.pm -> blib/lib/Bio/SeqEvolution/Factory.pm Copying Bio/Variation/AAChange.pm -> blib/lib/Bio/Variation/AAChange.pm Copying Bio/Index/Fastq.pm -> blib/lib/Bio/Index/Fastq.pm Copying Bio/SearchIO/Writer/TextResultWriter.pm -> blib/lib/Bio/SearchIO/Writer/TextResultWriter.pm Copying Bio/Range.pm -> blib/lib/Bio/Range.pm Copying Bio/Search/GenericStatistics.pm -> blib/lib/Bio/Search/GenericStatistics.pm Copying Bio/OntologyIO/dagflat.pm -> blib/lib/Bio/OntologyIO/dagflat.pm Copying Bio/SeqIO/pir.pm -> blib/lib/Bio/SeqIO/pir.pm Copying Bio/Factory/SequenceStreamI.pm -> blib/lib/Bio/Factory/SequenceStreamI.pm Copying Bio/Matrix/PhylipDist.pm -> blib/lib/Bio/Matrix/PhylipDist.pm Copying Bio/Annotation/Comment.pm -> blib/lib/Bio/Annotation/Comment.pm Copying Bio/SeqIO/Handler/GenericRichSeqHandler.pm -> blib/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm Copying Bio/DB/SeqFeature/NormalizedFeature.pm -> blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm Copying Bio/Biblio/PubmedArticle.pm -> blib/lib/Bio/Biblio/PubmedArticle.pm Copying Bio/Symbol/ProteinAlphabet.pm -> blib/lib/Bio/Symbol/ProteinAlphabet.pm Copying Bio/Tools/Genewise.pm -> blib/lib/Bio/Tools/Genewise.pm Copying Bio/DB/GFF/Aggregator/orf.pm -> blib/lib/Bio/DB/GFF/Aggregator/orf.pm Copying Bio/Search/HSP/HSPI.pm -> blib/lib/Bio/Search/HSP/HSPI.pm Copying Bio/Perl.p m -> blib/lib/Bio/Perl.pm Copying Bio/LiveSeq/Exon.pm -> blib/lib/Bio/LiveSeq/Exon.pm Copying Bio/Tools/Protparam.pm -> blib/lib/Bio/Tools/Protparam.pm Copying Bio/DB/LocationI.pm -> blib/lib/Bio/DB/LocationI.pm Copying Bio/SeqIO/game/gameHandler.pm -> blib/lib/Bio/SeqIO/game/gameHandler.pm Copying Bio/LiveSeq/Chain.pm -> blib/lib/Bio/LiveSeq/Chain.pm Copying Bio/ClusterIO/dbsnp.pm -> blib/lib/Bio/ClusterIO/dbsnp.pm Copying Bio/SearchIO/IteratedSearchResultEventBuilder.pm -> blib/lib/Bio/SearchIO/IteratedSearchResultEventBuilder.pm Copying Bio/AlignIO/meme.pm -> blib/lib/Bio/AlignIO/meme.pm Copying Bio/AlignIO/arp.pm -> blib/lib/Bio/AlignIO/arp.pm Copying Bio/Tools/Run/WrapperBase.pm -> blib/lib/Bio/Tools/Run/WrapperBase.pm Copying Bio/Map/MapI.pm -> blib/lib/Bio/Map/MapI.pm Copying Bio/PopGen/Marker.pm -> blib/lib/Bio/PopGen/Marker.pm Copying Bio/Location/WidestCoordPolicy.pm -> blib/lib/Bio/Location/WidestCoordPolicy.pm Copying Bio/Tools/Genomewise.pm -> blib/lib/Bio/Tools/Genomewise.pm Copying Bio/DB/SeqFeature/Store/GFF2Loader.pm -> blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm Copying Bio/DB/Flat/BDB/embl.pm -> blib/lib/Bio/DB/Flat/BDB/embl.pm Copying Bio/Search/HSP/BlastHSP.pm -> blib/lib/Bio/Search/HSP/BlastHSP.pm Copying Bio/LiveSeq/Mutator.pm -> blib/lib/Bio/LiveSeq/Mutator.pm Copying Bio/Phenotype/Measure.pm -> blib/lib/Bio/Phenotype/Measure.pm Copying Bio/DB/GFF/RelSegment.pm -> blib/lib/Bio/DB/GFF/RelSegment.pm Copying Bio/SeqFeature/Gene/Intron.pm -> blib/lib/Bio/SeqFeature/Gene/Intron.pm Copying Bio/Tools/Eponine.pm -> blib/lib/Bio/Tools/Eponine.pm Copying Bio/DB/SeqFeature/Store/GFF3Loader.pm -> blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm Copying Bio/Seq/LargeSeqI.pm -> blib/lib/Bio/Seq/LargeSeqI.pm Copying Bio/SeqIO/lasergene.pm -> blib/lib/Bio/SeqIO/lasergene.pm Copying Bio/Map/OrderedPosition.pm -> blib/lib/Bio/Map/OrderedPosition.pm Copying Bio/Annotation/TypeManager.pm -> blib/lib/Bio/Annotation/TypeManager.pm Copying Bio/DB/GFF/Aggregator/ucsc_ensgene.pm -> blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm Copying Bio/SeqIO/MultiFile.pm -> blib/lib/Bio/SeqIO/MultiFile.pm Copying Bio/Tools/Tmhmm.pm -> blib/lib/Bio/Tools/Tmhmm.pm Copying Bio/PopGen/IO/hapmap.pm -> blib/lib/Bio/PopGen/IO/hapmap.pm Copying Bio/FeatureIO/gtf.pm -> blib/lib/Bio/FeatureIO/gtf.pm Copying Bio/Factory/SeqAnalysisParserFactory.pm -> blib/lib/Bio/Factory/SeqAnalysisParserFactory.pm Copying Bio/Map/CytoMarker.pm -> blib/lib/Bio/Map/CytoMarker.pm Copying Bio/AlignIO/selex.pm -> blib/lib/Bio/AlignIO/selex.pm Copying Bio/SeqFeature/Gene/UTR.pm -> blib/lib/Bio/SeqFeature/Gene/UTR.pm Copying Bio/Search/Result/PullResultI.pm -> blib/lib/Bio/Search/Result/PullResultI.pm Copying Bio/Seq/SeqBuilder.pm -> blib/lib/Bio/Seq/SeqBuilder.pm Copying Bio/Biblio/Service.pm -> blib/lib/Bio/Biblio/Service.pm Copying Bio/Search/HSP/BlastPullHSP.pm -> blib/lib/Bio/Search/HSP/BlastPullHSP.pm Copying Bio/Biblio/MedlineJournal.pm -> blib/lib/Bio/Biblio/MedlineJournal.pm Copying Bio/DB/GenPept.pm -> blib/lib/Bio/DB/GenPept.pm Copying Bio/Map/TranscriptionFactor.pm -> blib/lib/Bio/Map/TranscriptionFactor.pm Copying Bio/Search/DatabaseI.pm -> blib/lib/Bio/Search/DatabaseI.pm Copying Bio/Index/Blast.pm -> blib/lib/Bio/Index/Blast.pm Copying Bio/SeqIO/game/featHandler.pm -> blib/lib/Bio/SeqIO/game/featHandler.pm Copying Bio/Tools/Blat.pm -> blib/lib/Bio/Tools/Blat.pm Copying Bio/FeatureIO/ptt.pm -> blib/lib/Bio/FeatureIO/ptt.pm Copying Bio/DB/SeqFeature/Store/memory.pm -> blib/lib/Bio/DB/SeqFeature/Store/memory.pm Copying Bio/Symbol/SymbolI.pm -> blib/lib/Bio/Symbol/SymbolI.pm Copying Bio/Tools/EUtilities/Query.pm -> blib/lib/Bio/Tools/EUtilities/Query.pm Copying Bio/Tools/EPCR.pm -> blib/lib/Bio/Tools/EPCR.pm Copying Bio/Location/NarrowestCoordPolicy.pm -> blib/lib/Bio/Location/NarrowestCoordPolicy.pm Copying Bio/Tools/pSW.pm -> blib/lib/Bio/Tools/pSW.pm Copying Bio/SeqIO/bsml_sax.pm -> blib/lib/Bio/SeqIO/bsml_sax.pm Copying Bio/SeqIO/gbdriver.pm -> blib/lib/Bio/SeqIO/gbdriver.pm Copying Bio/AnnotatableI.pm -> blib/lib/Bio/AnnotatableI.pm Copying Bio/Tools/ EUtilities/Link/LinkSet.pm -> blib/lib/Bio/Tools/EUtilities/Link/LinkSet.pm Copying Bio/Biblio/Proceeding.pm -> blib/lib/Bio/Biblio/Proceeding.pm Copying Bio/Tools/Run/GenericParameters.pm -> blib/lib/Bio/Tools/Run/GenericParameters.pm Copying Bio/TreeIO/newick.pm -> blib/lib/Bio/TreeIO/newick.pm Copying Bio/Biblio/Book.pm -> blib/lib/Bio/Biblio/Book.pm Copying Bio/SeqFeature/Gene/GeneStructure.pm -> blib/lib/Bio/SeqFeature/Gene/GeneStructure.pm Copying Bio/SearchIO/Writer/HTMLResultWriter.pm -> blib/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm Copying Bio/Tree/Statistics.pm -> blib/lib/Bio/Tree/Statistics.pm Copying Bio/Align/PairwiseStatistics.pm -> blib/lib/Bio/Align/PairwiseStatistics.pm Copying Bio/Assembly/IO.pm -> blib/lib/Bio/Assembly/IO.pm Copying Bio/SeqIO/tinyseq.pm -> blib/lib/Bio/SeqIO/tinyseq.pm Copying Bio/Ontology/TermFactory.pm -> blib/lib/Bio/Ontology/TermFactory.pm Copying Bio/Tools/SeqWords.pm -> blib/lib/Bio/Tools/SeqWords.pm Copying Bio/DB/GFF/Adaptor/dbi/oracleace.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/oracleace.pm Copying Bio/Expression/FeatureI.pm -> blib/lib/Bio/Expression/FeatureI.pm Copying Bio/Map/OrderedPositionWithDistance.pm -> blib/lib/Bio/Map/OrderedPositionWithDistance.pm Copying Bio/DB/SeqFeature/Store/berkeleydb.pm -> blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm Copying Bio/Tools/HMM.pm -> blib/lib/Bio/Tools/HMM.pm Copying Bio/Matrix/PSM/ProtPsm.pm -> blib/lib/Bio/Matrix/PSM/ProtPsm.pm Copying Bio/Biblio/IO/pubmed2ref.pm -> blib/lib/Bio/Biblio/IO/pubmed2ref.pm Copying Bio/SeqIO/game.pm -> blib/lib/Bio/SeqIO/game.pm Copying Bio/Index/Abstract.pm -> blib/lib/Bio/Index/Abstract.pm Copying Bio/Search/Iteration/IterationI.pm -> blib/lib/Bio/Search/Iteration/IterationI.pm Copying Bio/SearchIO/blastxml.pm -> blib/lib/Bio/SearchIO/blastxml.pm Copying Bio/Tools/HMMER/Domain.pm -> blib/lib/Bio/Tools/HMMER/Domain.pm Copying Bio/DB/GFF/Adaptor/dbi/oracle.pm -> blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm Copying Bio/SeqFeature/Tools/FeatureNamer.pm -> blib/lib/Bio/SeqFeature/Tools/FeatureNamer.pm Copying Bio/Biblio/IO/medlinexml.pm -> blib/lib/Bio/Biblio/IO/medlinexml.pm Copying Bio/Coordinate/GeneMapper.pm -> blib/lib/Bio/Coordinate/GeneMapper.pm Copying Bio/SeqIO/flybase_chadoxml.pm -> blib/lib/Bio/SeqIO/flybase_chadoxml.pm Copying Bio/Location/FuzzyLocationI.pm -> blib/lib/Bio/Location/FuzzyLocationI.pm Copying Bio/DB/TFBS/transfac_pro.pm -> blib/lib/Bio/DB/TFBS/transfac_pro.pm Copying Bio/SeqIO/ace.pm -> blib/lib/Bio/SeqIO/ace.pm Copying Bio/Search/Hit/Fasta.pm -> blib/lib/Bio/Search/Hit/Fasta.pm Copying Bio/Root/Exception.pm -> blib/lib/Bio/Root/Exception.pm Copying Bio/Factory/TreeFactoryI.pm -> blib/lib/Bio/Factory/TreeFactoryI.pm Copying Bio/Expression/Contact.pm -> blib/lib/Bio/Expression/Contact.pm Copying Bio/SearchIO/cross_match.pm -> blib/lib/Bio/SearchIO/cross_match.pm Copying Bio/Assembly/IO/ace.pm -> blib/lib/Bio/Assembly/IO/ace.pm Copying Bio/Expression/Sample.pm -> blib/lib/Bio/Expression/Sample.pm Copying Bio/Map/RelativeI.pm -> blib/lib/Bio/Map/RelativeI.pm Copying Bio/DB/Biblio/soap.pm -> blib/lib/Bio/DB/Biblio/soap.pm Copying Bio/SeqIO/tab.pm -> blib/lib/Bio/SeqIO/tab.pm Copying scripts/utilities/bp_sreformat.PLS -> blib/script/bp_sreformat.PLS Deleting blib/script/bp_sreformat.PLS.bak blib/script/bp_sreformat.PLS -> blib/script/bp_sreformat.pl Copying scripts/seq/seqconvert.PLS -> blib/script/seqconvert.PLS Deleting blib/script/seqconvert.PLS.bak blib/script/seqconvert.PLS -> blib/script/bp_seqconvert.pl Copying scripts/searchio/parse_hmmsearch.PLS -> blib/script/parse_hmmsearch.PLS Deleting blib/script/parse_hmmsearch.PLS.bak blib/script/parse_hmmsearch.PLS -> blib/script/bp_parse_hmmsearch.pl Copying scripts/index/bp_seqret.PLS -> blib/script/bp_seqret.PLS Deleting blib/script/bp_seqret.PLS.bak blib/script/bp_seqret.PLS -> blib/script/bp_seqret.pl Copying scripts/tree/tree2pag.PLS -> blib/script/tree2pag.PLS Deleting blib/script/tree2pag.PLS.bak blib/script/tree2pag.PLS -> blib/script/bp_tree2pag.pl Copying scripts/Bio-DB-GFF/meta_gff.PLS -> blib/script/meta_gff.PLS Deleting blib/script/meta_gff.PLS.bak blib/script/meta_gff.PLS -> blib/script/bp_meta_gff.pl Copying scripts/tree/nexus2nh.PLS -> blib/script/nexus2nh.PLS Deleting blib/script/nexus2nh.PLS.bak blib/script/nexus2nh.PLS -> blib/script/bp_nexus2nh.pl Copying scripts/searchio/filter_search.PLS -> blib/script/filter_search.PLS Deleting blib/script/filter_search.PLS.bak blib/script/filter_search.PLS -> blib/script/bp_filter_search.pl Copying scripts/Bio-SeqFeature-Store/bp_seqfeature_gff3.PLS -> blib/script/bp_seqfeature_gff3.PLS blib/script/bp_seqfeature_gff3.PLS -> blib/script/bp_seqfeature_gff3.pl Copying scripts/Bio-DB-GFF/generate_histogram.PLS -> blib/script/generate_histogram.PLS Deleting blib/script/generate_histogram.PLS.bak blib/script/generate_histogram.PLS -> blib/script/bp_generate_histogram.pl Copying scripts/popgen/heterogeneity_test.PLS -> blib/script/heterogeneity_test.PLS Deleting blib/script/heterogeneity_test.PLS.bak blib/script/heterogeneity_test.PLS -> blib/script/bp_heterogeneity_test.pl Copying scripts/DB/flanks.PLS -> blib/script/flanks.PLS Deleting blib/script/flanks.PLS.bak blib/script/flanks.PLS -> blib/script/bp_flanks.pl Copying scripts/seq/split_seq.PLS -> blib/script/split_seq.PLS Deleting blib/script/split_seq.PLS.bak blib/script/split_seq.PLS -> blib/script/bp_split_seq.pl Copying scripts/Bio-DB-GFF/load_gff.PLS -> blib/script/load_gff.PLS Deleting blib/script/load_gff.PLS.bak blib/script/load_gff.PLS -> blib/script/bp_load_gff.pl Copying scripts/DB/biogetseq.PLS -> blib/script/biogetseq.PLS Deleting blib/script/biogetseq.PLS.bak blib/script/biogetseq.PLS -> blib/script/bp_biogetseq.pl Copying scripts/index/bp_fetch.PLS -> blib/script/bp_fetch.PLS Deleting blib/script/bp_fetch.PLS.bak blib/script/bp_fetch.PLS -> blib/script/bp_fetch.pl Copying scripts/utilities/mutate.PLS -> blib/script/mutate.PLS Deleting blib/script/mutate.PLS.bak blib/script/mutate.PLS -> blib/script/bp_mutate.pl Copying scripts/Bio-DB-GFF/process_sgd.PLS -> blib/script/process_sgd.PLS Deleting blib/script/process_sgd.PLS.bak blib/script/process_sgd.PLS -> blib/script/bp_process_sgd.pl Copying scripts/index/bp_index.PLS -> blib/script/bp_index.PLS Deleting blib/script/bp_index.PLS.bak blib/script/bp_index.PLS -> blib/script/bp_index.pl Copying scripts/utilities/dbsplit.PLS -> blib/script/dbsplit.PLS Deleting blib/script/dbsplit.PLS.bak blib/script/dbsplit.PLS -> blib/script/bp_dbsplit.pl Copying scripts/seqstats/oligo_count.PLS -> blib/script/oligo_count.PLS Deleting blib/script/oligo_count.PLS.bak blib/script/oligo_count.PLS -> blib/script/bp_oligo_count.pl Copying scripts/Bio-SeqFeature-Store/bp_seqfeature_load.PLS -> blib/script/bp_seqfeature_load.PLS Deleting blib/script/bp_seqfeature_load.PLS.bak blib/script/bp_seqfeature_load.PLS -> blib/script/bp_seqfeature_load.pl Copying scripts/Bio-DB-GFF/process_gadfly.PLS -> blib/script/process_gadfly.PLS Deleting blib/script/process_gadfly.PLS.bak blib/script/process_gadfly.PLS -> blib/script/bp_process_gadfly.pl Copying scripts/searchio/hmmer_to_table.PLS -> blib/script/hmmer_to_table.PLS Deleting blib/script/hmmer_to_table.PLS.bak blib/script/hmmer_to_table.PLS -> blib/script/bp_hmmer_to_table.pl Copying scripts/searchio/fastam9_to_table.PLS -> blib/script/fastam9_to_table.PLS Deleting blib/script/fastam9_to_table.PLS.bak blib/script/fastam9_to_table.PLS -> blib/script/bp_fastam9_to_table.pl Copying scripts/DB/biofetch_genbank_proxy.PLS -> blib/script/biofetch_genbank_proxy.PLS Deleting blib/script/biofetch_genbank_proxy.PLS.bak blib/script/biofetch_genbank_proxy.PLS -> blib/script/bp_biofetch_genbank_proxy.pl Copying scripts/utilities/seq_length.PLS -> blib/script/seq_length.PLS Deleting blib/script/seq_length.PLS.bak blib/script/seq_length.PLS -> blib/script/bp_seq_length.pl Copying scripts/seq/extract_feature_seq.PLS -> blib/script/extract_feature_seq.PLS Deleting blib/script/extract_feature_seq.PLS.bak blib/script/extract_feature_seq.PLS -> blib/script/bp_extract_feature_seq.pl Copying scripts/Bio-DB-GFF/genbank2gff.PLS -> blib/script/genbank2gff.PLS Deleting blib/script/genbank2 gff.PLS.bak blib/script/genbank2gff.PLS -> blib/script/bp_genbank2gff.pl Copying scripts/taxa/taxid4species.PLS -> blib/script/taxid4species.PLS Deleting blib/script/taxid4species.PLS.bak blib/script/taxid4species.PLS -> blib/script/bp_taxid4species.pl Copying scripts/Bio-DB-GFF/bulk_load_gff.PLS -> blib/script/bulk_load_gff.PLS Deleting blib/script/bulk_load_gff.PLS.bak blib/script/bulk_load_gff.PLS -> blib/script/bp_bulk_load_gff.pl Copying scripts/utilities/search2gff.PLS -> blib/script/search2gff.PLS Deleting blib/script/search2gff.PLS.bak blib/script/search2gff.PLS -> blib/script/bp_search2gff.pl Copying scripts/tree/blast2tree.PLS -> blib/script/blast2tree.PLS Deleting blib/script/blast2tree.PLS.bak blib/script/blast2tree.PLS -> blib/script/bp_blast2tree.pl Copying scripts/seq/make_mrna_protein.PLS -> blib/script/make_mrna_protein.PLS Deleting blib/script/make_mrna_protein.PLS.bak blib/script/make_mrna_protein.PLS -> blib/script/bp_make_mrna_protein.pl Copying scripts/seq/unflatten_seq.PLS -> blib/script/unflatten_seq.PLS Deleting blib/script/unflatten_seq.PLS.bak blib/script/unflatten_seq.PLS -> blib/script/bp_unflatten_seq.pl Copying scripts/utilities/search2tribe.PLS -> blib/script/search2tribe.PLS Deleting blib/script/search2tribe.PLS.bak blib/script/search2tribe.PLS -> blib/script/bp_search2tribe.pl Copying scripts/DB/bioflat_index.PLS -> blib/script/bioflat_index.PLS Deleting blib/script/bioflat_index.PLS.bak blib/script/bioflat_index.PLS -> blib/script/bp_bioflat_index.pl Copying scripts/Bio-SeqFeature-Store/bp_seqfeature_delete.PLS -> blib/script/bp_seqfeature_delete.PLS Deleting blib/script/bp_seqfeature_delete.PLS.bak blib/script/bp_seqfeature_delete.PLS -> blib/script/bp_seqfeature_delete.pl Copying scripts/taxa/query_entrez_taxa.PLS -> blib/script/query_entrez_taxa.PLS Deleting blib/script/query_entrez_taxa.PLS.bak blib/script/query_entrez_taxa.PLS -> blib/script/bp_query_entrez_taxa.pl Copying scripts/utilities/pairwise_kaks.PLS -> blib/script/pairwise_kaks.PLS Deleting blib/script/pairwise_kaks.PLS.bak blib/script/pairwise_kaks.PLS -> blib/script/bp_pairwise_kaks.pl Copying scripts/Bio-DB-GFF/fast_load_gff.PLS -> blib/script/fast_load_gff.PLS Deleting blib/script/fast_load_gff.PLS.bak blib/script/fast_load_gff.PLS -> blib/script/bp_fast_load_gff.pl Copying scripts/seqstats/chaos_plot.PLS -> blib/script/chaos_plot.PLS Deleting blib/script/chaos_plot.PLS.bak blib/script/chaos_plot.PLS -> blib/script/bp_chaos_plot.pl Copying scripts/taxa/taxonomy2tree.PLS -> blib/script/taxonomy2tree.PLS Deleting blib/script/taxonomy2tree.PLS.bak blib/script/taxonomy2tree.PLS -> blib/script/bp_taxonomy2tree.pl Copying scripts/utilities/bp_mrtrans.PLS -> blib/script/bp_mrtrans.PLS Deleting blib/script/bp_mrtrans.PLS.bak blib/script/bp_mrtrans.PLS -> blib/script/bp_mrtrans.pl Copying scripts/utilities/search2alnblocks.PLS -> blib/script/search2alnblocks.PLS Deleting blib/script/search2alnblocks.PLS.bak blib/script/search2alnblocks.PLS -> blib/script/bp_search2alnblocks.pl Copying scripts/utilities/download_query_genbank.PLS -> blib/script/download_query_genbank.PLS Deleting blib/script/download_query_genbank.PLS.bak blib/script/download_query_genbank.PLS -> blib/script/bp_download_query_genbank.pl Copying scripts/utilities/bp_nrdb.PLS -> blib/script/bp_nrdb.PLS Deleting blib/script/bp_nrdb.PLS.bak blib/script/bp_nrdb.PLS -> blib/script/bp_nrdb.pl Copying scripts/utilities/mask_by_search.PLS -> blib/script/mask_by_search.PLS Deleting blib/script/mask_by_search.PLS.bak blib/script/mask_by_search.PLS -> blib/script/bp_mask_by_search.pl Copying scripts/seqstats/gccalc.PLS -> blib/script/gccalc.PLS Deleting blib/script/gccalc.PLS.bak blib/script/gccalc.PLS -> blib/script/bp_gccalc.pl Copying scripts/popgen/composite_LD.PLS -> blib/script/composite_LD.PLS Deleting blib/script/composite_LD.PLS.bak blib/script/composite_LD.PLS -> blib/script/bp_composite_LD.pl Copying scripts/taxa/classify_hits_kingdom.PLS -> blib/script/classify_hits_kingdom.PLS Deleting blib/script/classify_hits_kingdom.PLS.bak blib/script/classify_hits_kingdom. PLS -> blib/script/bp_classify_hits_kingdom.pl Copying scripts/seqstats/aacomp.PLS -> blib/script/aacomp.PLS Deleting blib/script/aacomp.PLS.bak blib/script/aacomp.PLS -> blib/script/bp_aacomp.pl Copying scripts/Bio-DB-GFF/process_wormbase.PLS -> blib/script/process_wormbase.PLS Deleting blib/script/process_wormbase.PLS.bak blib/script/process_wormbase.PLS -> blib/script/bp_process_wormbase.pl Copying scripts/taxa/local_taxonomydb_query.PLS -> blib/script/local_taxonomydb_query.PLS Deleting blib/script/local_taxonomydb_query.PLS.bak blib/script/local_taxonomydb_query.PLS -> blib/script/bp_local_taxonomydb_query.pl Copying scripts/biblio/biblio.PLS -> blib/script/biblio.PLS Deleting blib/script/biblio.PLS.bak blib/script/biblio.PLS -> blib/script/bp_biblio.pl Copying scripts/seq/seqretsplit.PLS -> blib/script/seqretsplit.PLS Deleting blib/script/seqretsplit.PLS.bak blib/script/seqretsplit.PLS -> blib/script/bp_seqretsplit.pl Copying scripts/utilities/remote_blast.PLS -> blib/script/remote_blast.PLS Deleting blib/script/remote_blast.PLS.bak blib/script/remote_blast.PLS -> blib/script/bp_remote_blast.pl Copying scripts/Bio-DB-GFF/genbank2gff3.PLS -> blib/script/genbank2gff3.PLS Deleting blib/script/genbank2gff3.PLS.bak blib/script/genbank2gff3.PLS -> blib/script/bp_genbank2gff3.pl Copying scripts/searchio/search2table.PLS -> blib/script/search2table.PLS Deleting blib/script/search2table.PLS.bak blib/script/search2table.PLS -> blib/script/bp_search2table.pl Copying scripts/utilities/search2BSML.PLS -> blib/script/search2BSML.PLS Deleting blib/script/search2BSML.PLS.bak blib/script/search2BSML.PLS -> blib/script/bp_search2BSML.pl Copying scripts/seq/translate_seq.PLS -> blib/script/translate_seq.PLS Deleting blib/script/translate_seq.PLS.bak blib/script/translate_seq.PLS -> blib/script/bp_translate_seq.pl Copying Bio/DB/HIV/lanl-schema.xml -> blib/lib/Bio/DB/HIV/lanl-schema.xml Writing config notes to blib/lib/Bio/ConfigData.pm Manifying blib/script/bp_translate_seq.pl -> blib/bindoc/bp_translate_seq.pl.1 Manifying blib/script/bp_chaos_plot.pl -> blib/bindoc/bp_chaos_plot.pl.1 Manifying blib/script/bp_flanks.pl -> blib/bindoc/bp_flanks.pl.1 Manifying blib/script/bp_mask_by_search.pl -> blib/bindoc/bp_mask_by_search.pl.1 Manifying blib/script/bp_hmmer_to_table.pl -> blib/bindoc/bp_hmmer_to_table.pl.1 Manifying blib/script/bp_filter_search.pl -> blib/bindoc/bp_filter_search.pl.1 Manifying blib/script/bp_seqretsplit.pl -> blib/bindoc/bp_seqretsplit.pl.1 Manifying blib/script/bp_bulk_load_gff.pl -> blib/bindoc/bp_bulk_load_gff.pl.1 Manifying blib/script/bp_dbsplit.pl -> blib/bindoc/bp_dbsplit.pl.1 Manifying blib/script/bp_search2BSML.pl -> blib/bindoc/bp_search2BSML.pl.1 Manifying blib/script/bp_search2tribe.pl -> blib/bindoc/bp_search2tribe.pl.1 Manifying blib/script/bp_biofetch_genbank_proxy.pl -> blib/bindoc/bp_biofetch_genbank_proxy.pl.1 Manifying blib/script/bp_search2gff.pl -> blib/bindoc/bp_search2gff.pl.1 Manifying blib/script/bp_seqconvert.pl -> blib/bindoc/bp_seqconvert.pl.1 Manifying blib/script/bp_meta_gff.pl -> blib/bindoc/bp_meta_gff.pl.1 Manifying blib/script/bp_make_mrna_protein.pl -> blib/bindoc/bp_make_mrna_protein.pl.1 Manifying blib/script/bp_local_taxonomydb_query.pl -> blib/bindoc/bp_local_taxonomydb_query.pl.1 Manifying blib/script/bp_sreformat.pl -> blib/bindoc/bp_sreformat.pl.1 Manifying blib/script/bp_search2table.pl -> blib/bindoc/bp_search2table.pl.1 Manifying blib/script/bp_taxid4species.pl -> blib/bindoc/bp_taxid4species.pl.1 Manifying blib/script/bp_biblio.pl -> blib/bindoc/bp_biblio.pl.1 Manifying blib/script/bp_gccalc.pl -> blib/bindoc/bp_gccalc.pl.1 Manifying blib/script/bp_download_query_genbank.pl -> blib/bindoc/bp_download_query_genbank.pl.1 Manifying blib/script/bp_remote_blast.pl -> blib/bindoc/bp_remote_blast.pl.1 Manifying blib/script/bp_aacomp.pl -> blib/bindoc/bp_aacomp.pl.1 Manifying blib/script/bp_mrtrans.pl -> blib/bindoc/bp_mrtrans.pl.1 Manifying blib/script/bp_split_seq.pl -> blib/bindoc/bp_split_seq.pl.1 Manifying blib/script/bp_mutate.pl -> blib/bindoc/bp_mutate.pl.1 Manifying bli b/script/bp_genbank2gff3.pl -> blib/bindoc/bp_genbank2gff3.pl.1 Manifying blib/script/bp_search2alnblocks.pl -> blib/bindoc/bp_search2alnblocks.pl.1 Manifying blib/script/bp_process_sgd.pl -> blib/bindoc/bp_process_sgd.pl.1 Manifying blib/script/bp_genbank2gff.pl -> blib/bindoc/bp_genbank2gff.pl.1 Manifying blib/script/bp_fast_load_gff.pl -> blib/bindoc/bp_fast_load_gff.pl.1 Manifying blib/script/bp_fetch.pl -> blib/bindoc/bp_fetch.pl.1 Manifying blib/script/bp_index.pl -> blib/bindoc/bp_index.pl.1 Manifying blib/script/bp_taxonomy2tree.pl -> blib/bindoc/bp_taxonomy2tree.pl.1 Manifying blib/script/bp_nexus2nh.pl -> blib/bindoc/bp_nexus2nh.pl.1 Manifying blib/script/bp_oligo_count.pl -> blib/bindoc/bp_oligo_count.pl.1 Manifying blib/script/bp_bioflat_index.pl -> blib/bindoc/bp_bioflat_index.pl.1 Manifying blib/script/bp_biogetseq.pl -> blib/bindoc/bp_biogetseq.pl.1 Manifying blib/script/bp_extract_feature_seq.pl -> blib/bindoc/bp_extract_feature_seq.pl.1 Manifying blib/script/bp_tree2pag.pl -> blib/bindoc/bp_tree2pag.pl.1 Manifying blib/script/bp_unflatten_seq.pl -> blib/bindoc/bp_unflatten_seq.pl.1 Manifying blib/script/bp_parse_hmmsearch.pl -> blib/bindoc/bp_parse_hmmsearch.pl.1 Manifying blib/script/bp_pairwise_kaks.pl -> blib/bindoc/bp_pairwise_kaks.pl.1 Manifying blib/script/bp_query_entrez_taxa.pl -> blib/bindoc/bp_query_entrez_taxa.pl.1 Manifying blib/script/bp_seqret.pl -> blib/bindoc/bp_seqret.pl.1 Manifying blib/script/bp_seq_length.pl -> blib/bindoc/bp_seq_length.pl.1 Manifying blib/script/bp_load_gff.pl -> blib/bindoc/bp_load_gff.pl.1 Manifying blib/script/bp_fastam9_to_table.pl -> blib/bindoc/bp_fastam9_to_table.pl.1 Manifying blib/script/bp_process_wormbase.pl -> blib/bindoc/bp_process_wormbase.pl.1 Manifying blib/script/bp_nrdb.pl -> blib/bindoc/bp_nrdb.pl.1 Manifying blib/script/bp_classify_hits_kingdom.pl -> blib/bindoc/bp_classify_hits_kingdom.pl.1 Manifying blib/script/bp_composite_LD.pl -> blib/bindoc/bp_composite_LD.pl.1 Manifying blib/script/bp_blast2tree.pl -> blib/bindoc/bp_blast2tree.pl.1 Manifying blib/script/bp_heterogeneity_test.pl -> blib/bindoc/bp_heterogeneity_test.pl.1 Manifying blib/script/bp_generate_histogram.pl -> blib/bindoc/bp_generate_histogram.pl.1 Manifying blib/script/bp_process_gadfly.pl -> blib/bindoc/bp_process_gadfly.pl.1 Manifying blib/lib/Bio/SeqIO/interpro.pm -> blib/libdoc/Bio::SeqIO::interpro.3pm Manifying blib/lib/Bio/Tools/SiRNA/Ruleset/tuschl.pm -> blib/libdoc/Bio::Tools::SiRNA::Ruleset::tuschl.3pm Manifying blib/lib/Bio/Expression/FeatureGroup.pm -> blib/libdoc/Bio::Expression::FeatureGroup.3pm Manifying blib/lib/Bio/OntologyIO/dagflat.pm -> blib/libdoc/Bio::OntologyIO::dagflat.3pm Manifying blib/lib/Bio/Seq/SeqFactory.pm -> blib/libdoc/Bio::Seq::SeqFactory.3pm Manifying blib/lib/Bio/Location/CoordinatePolicyI.pm -> blib/libdoc/Bio::Location::CoordinatePolicyI.3pm Manifying blib/lib/Bio/Root/Storable.pm -> blib/libdoc/Bio::Root::Storable.3pm Manifying blib/lib/Bio/Location/Atomic.pm -> blib/libdoc/Bio::Location::Atomic.3pm Manifying blib/lib/Bio/SearchIO/SearchWriterI.pm -> blib/libdoc/Bio::SearchIO::SearchWriterI.3pm Manifying blib/lib/Bio/FeatureIO.pm -> blib/libdoc/Bio::FeatureIO.3pm Manifying blib/lib/Bio/Biblio/IO.pm -> blib/libdoc/Bio::Biblio::IO.3pm Manifying blib/lib/Bio/Variation/RNAChange.pm -> blib/libdoc/Bio::Variation::RNAChange.3pm Manifying blib/lib/Bio/Root/Exception.pm -> blib/libdoc/Bio::Root::Exception.3pm Manifying blib/lib/Bio/Factory/LocationFactoryI.pm -> blib/libdoc/Bio::Factory::LocationFactoryI.3pm Manifying blib/lib/Bio/Biblio/Ref.pm -> blib/libdoc/Bio::Biblio::Ref.3pm Manifying blib/lib/Bio/Search/HSP/WABAHSP.pm -> blib/libdoc/Bio::Search::HSP::WABAHSP.3pm Manifying blib/lib/Bio/SeqIO/embl.pm -> blib/libdoc/Bio::SeqIO::embl.3pm Manifying blib/lib/Bio/Factory/DriverFactory.pm -> blib/libdoc/Bio::Factory::DriverFactory.3pm Manifying blib/lib/Bio/Tools/Genemark.pm -> blib/libdoc/Bio::Tools::Genemark.3pm Manifying blib/lib/Bio/Biblio/MedlineArticle.pm -> blib/libdoc/Bio::Biblio::MedlineArticle.3pm Manifying blib/lib/Bio/LiveSeq/ChainI.pm -> bli b/libdoc/Bio::LiveSeq::ChainI.3pm Manifying blib/lib/Bio/Tools/PrositeScan.pm -> blib/libdoc/Bio::Tools::PrositeScan.3pm Manifying blib/lib/Bio/LiveSeq/Intron.pm -> blib/libdoc/Bio::LiveSeq::Intron.3pm Manifying blib/lib/Bio/Matrix/IO/scoring.pm -> blib/libdoc/Bio::Matrix::IO::scoring.3pm Manifying blib/lib/Bio/Seq/LargeLocatableSeq.pm -> blib/libdoc/Bio::Seq::LargeLocatableSeq.3pm Manifying blib/lib/Bio/AlignIO/msf.pm -> blib/libdoc/Bio::AlignIO::msf.3pm Manifying blib/lib/Bio/Tools/Glimmer.pm -> blib/libdoc/Bio::Tools::Glimmer.3pm Manifying blib/lib/Bio/SeqIO/flybase_chadoxml.pm -> blib/libdoc/Bio::SeqIO::flybase_chadoxml.3pm Manifying blib/lib/Bio/Map/RelativeI.pm -> blib/libdoc/Bio::Map::RelativeI.3pm Manifying blib/lib/Bio/Tools/Profile.pm -> blib/libdoc/Bio::Tools::Profile.3pm Manifying blib/lib/Bio/LiveSeq/Mutator.pm -> blib/libdoc/Bio::LiveSeq::Mutator.3pm Manifying blib/lib/Bio/Tools/Primer/Pair.pm -> blib/libdoc/Bio::Tools::Primer::Pair.3pm Manifying blib/lib/Bio/Annotation/TypeManager.pm -> blib/libdoc/Bio::Annotation::TypeManager.3pm Manifying blib/lib/Bio/Expression/ProbeI.pm -> blib/libdoc/Bio::Expression::ProbeI.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/alignment.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::alignment.3pm Manifying blib/lib/Bio/SearchIO/IteratedSearchResultEventBuilder.pm -> blib/libdoc/Bio::SearchIO::IteratedSearchResultEventBuilder.3pm Manifying blib/lib/Bio/Map/LinkagePosition.pm -> blib/libdoc/Bio::Map::LinkagePosition.3pm Manifying blib/lib/Bio/Tools/Primer/Assessor/Base.pm -> blib/libdoc/Bio::Tools::Primer::Assessor::Base.3pm Manifying blib/lib/Bio/ClusterIO/unigene.pm -> blib/libdoc/Bio::ClusterIO::unigene.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::pg.3pm Manifying blib/lib/Bio/DB/GFF/Util/Binning.pm -> blib/libdoc/Bio::DB::GFF::Util::Binning.3pm Manifying blib/lib/Bio/Index/Abstract.pm -> blib/libdoc/Bio::Index::Abstract.3pm Manifying blib/lib/Bio/PopGen/GenotypeI.pm -> blib/libdoc/Bio::PopGen::GenotypeI.3pm Manifying blib/lib/Bio/Cluster/ClusterFactory.pm -> blib/libdoc/Bio::Cluster::ClusterFactory.3pm Manifying blib/lib/Bio/Tools/pSW.pm -> blib/libdoc/Bio::Tools::pSW.3pm Manifying blib/lib/Bio/FeatureIO/interpro.pm -> blib/libdoc/Bio::FeatureIO::interpro.3pm Manifying blib/lib/Bio/SeqFeature/Gene/TranscriptI.pm -> blib/libdoc/Bio::SeqFeature::Gene::TranscriptI.3pm Manifying blib/lib/Bio/TreeIO/tabtree.pm -> blib/libdoc/Bio::TreeIO::tabtree.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store.pm -> blib/libdoc/Bio::DB::SeqFeature::Store.3pm Manifying blib/lib/Bio/SeqFeature/Gene/NC_Feature.pm -> blib/libdoc/Bio::SeqFeature::Gene::NC_Feature.3pm Manifying blib/lib/Bio/Biblio/Provider.pm -> blib/libdoc/Bio::Biblio::Provider.3pm Manifying blib/lib/Bio/Phenotype/PhenotypeI.pm -> blib/libdoc/Bio::Phenotype::PhenotypeI.3pm Manifying blib/lib/Bio/SeqIO/bsml_sax.pm -> blib/libdoc/Bio::SeqIO::bsml_sax.3pm Manifying blib/lib/Bio/Map/OrderedPosition.pm -> blib/libdoc/Bio::Map::OrderedPosition.3pm Manifying blib/lib/Bio/Search/BlastUtils.pm -> blib/libdoc/Bio::Search::BlastUtils.3pm Manifying blib/lib/Bio/SearchIO/blastxml.pm -> blib/libdoc/Bio::SearchIO::blastxml.3pm Manifying blib/lib/Bio/DB/Expression/geo.pm -> blib/libdoc/Bio::DB::Expression::geo.3pm Manifying blib/lib/Bio/Tools/FootPrinter.pm -> blib/libdoc/Bio::Tools::FootPrinter.3pm Manifying blib/lib/Bio/Coordinate/ResultI.pm -> blib/libdoc/Bio::Coordinate::ResultI.3pm Manifying blib/lib/Bio/Factory/ApplicationFactoryI.pm -> blib/libdoc/Bio::Factory::ApplicationFactoryI.3pm Manifying blib/lib/Bio/SeqIO/scf.pm -> blib/libdoc/Bio::SeqIO::scf.3pm Manifying blib/lib/Bio/Tools/EUtilities/Info.pm -> blib/libdoc/Bio::Tools::EUtilities::Info.3pm Manifying blib/lib/Bio/PopGen/PopStats.pm -> blib/libdoc/Bio::PopGen::PopStats.3pm Manifying blib/lib/Bio/SeqEvolution/Factory.pm -> blib/libdoc/Bio::SeqEvolution::Factory.3pm Manifying blib/lib/Bio/DB/Query/GenBank.pm -> blib/libdoc/Bio::DB: :Query::GenBank.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_unigene.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/Domcut.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::Domcut.3pm Manifying blib/lib/Bio/SearchIO/blast.pm -> blib/libdoc/Bio::SearchIO::blast.3pm Manifying blib/lib/Bio/Structure/Model.pm -> blib/libdoc/Bio::Structure::Model.3pm Manifying blib/lib/Bio/Tools/Hmmpfam.pm -> blib/libdoc/Bio::Tools::Hmmpfam.3pm Manifying blib/lib/Bio/CodonUsage/Table.pm -> blib/libdoc/Bio::CodonUsage::Table.3pm Manifying blib/lib/Bio/Factory/SequenceStreamI.pm -> blib/libdoc/Bio::Factory::SequenceStreamI.3pm Manifying blib/lib/Bio/LiveSeq/Prim_Transcript.pm -> blib/libdoc/Bio::LiveSeq::Prim_Transcript.3pm Manifying blib/lib/Bio/MolEvol/CodonModel.pm -> blib/libdoc/Bio::MolEvol::CodonModel.3pm Manifying blib/lib/Bio/Annotation/TagTree.pm -> blib/libdoc/Bio::Annotation::TagTree.3pm Manifying blib/lib/Bio/DB/EMBL.pm -> blib/libdoc/Bio::DB::EMBL.3pm Manifying blib/lib/Bio/Map/Microsatellite.pm -> blib/libdoc/Bio::Map::Microsatellite.3pm Manifying blib/lib/Bio/Tools/Alignment/Trim.pm -> blib/libdoc/Bio::Tools::Alignment::Trim.3pm Manifying blib/lib/Bio/Tools/Geneid.pm -> blib/libdoc/Bio::Tools::Geneid.3pm Manifying blib/lib/Bio/Restriction/IO/prototype.pm -> blib/libdoc/Bio::Restriction::IO::prototype.3pm Manifying blib/lib/Bio/Structure/Entry.pm -> blib/libdoc/Bio::Structure::Entry.3pm Manifying blib/lib/Bio/Map/Contig.pm -> blib/libdoc/Bio::Map::Contig.3pm Manifying blib/lib/Bio/Range.pm -> blib/libdoc/Bio::Range.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_refgene.3pm Manifying blib/lib/Bio/Assembly/Contig.pm -> blib/libdoc/Bio::Assembly::Contig.3pm Manifying blib/lib/Bio/Tools/AnalysisResult.pm -> blib/libdoc/Bio::Tools::AnalysisResult.3pm Manifying blib/lib/Bio/IdentifiableI.pm -> blib/libdoc/Bio::IdentifiableI.3pm Manifying blib/lib/Bio/Map/Mappable.pm -> blib/libdoc/Bio::Map::Mappable.3pm Manifying blib/lib/Bio/Matrix/PSM/ProtPsm.pm -> blib/libdoc/Bio::Matrix::PSM::ProtPsm.3pm Manifying blib/lib/Bio/Taxonomy/Taxon.pm -> blib/libdoc/Bio::Taxonomy::Taxon.3pm Manifying blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm -> blib/libdoc/Bio::DB::SeqFeature::NormalizedFeature.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/orf.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::orf.3pm Manifying blib/lib/Bio/TreeIO/svggraph.pm -> blib/libdoc/Bio::TreeIO::svggraph.3pm Manifying blib/lib/Bio/PopGen/IO/hapmap.pm -> blib/libdoc/Bio::PopGen::IO::hapmap.3pm Manifying blib/lib/Bio/Restriction/IO/withrefm.pm -> blib/libdoc/Bio::Restriction::IO::withrefm.3pm Manifying blib/lib/Bio/Tree/DistanceFactory.pm -> blib/libdoc/Bio::Tree::DistanceFactory.3pm Manifying blib/lib/Bio/SeqFeature/Gene/Exon.pm -> blib/libdoc/Bio::SeqFeature::Gene::Exon.3pm Manifying blib/lib/Bio/DB/Query/WebQuery.pm -> blib/libdoc/Bio::DB::Query::WebQuery.3pm Manifying blib/lib/Bio/Search/Result/CrossMatchResult.pm -> blib/libdoc/Bio::Search::Result::CrossMatchResult.3pm Manifying blib/lib/Bio/DB/Universal.pm -> blib/libdoc/Bio::DB::Universal.3pm Manifying blib/lib/Bio/Tree/NodeI.pm -> blib/libdoc/Bio::Tree::NodeI.3pm Manifying blib/lib/Bio/Tools/Phylo/Gerp.pm -> blib/libdoc/Bio::Tools::Phylo::Gerp.3pm Manifying blib/lib/Bio/SeqIO/MultiFile.pm -> blib/libdoc/Bio::SeqIO::MultiFile.3pm Manifying blib/lib/Bio/Seq/SeqFastaSpeedFactory.pm -> blib/libdoc/Bio::Seq::SeqFastaSpeedFactory.3pm Manifying blib/lib/Bio/Tools/EUtilities/Link.pm -> blib/libdoc/Bio::Tools::EUtilities::Link.3pm Manifying blib/lib/Bio/Tools/Tmhmm.pm -> blib/libdoc/Bio::Tools::Tmhmm.3pm Manifying blib/lib/Bio/Restriction/Enzyme/MultiSite.pm -> blib/libdoc/Bio::Restriction::Enzyme::MultiSite.3pm Manifying blib/lib/Bio/Tools/EUtilities/Cookie.pm -> blib/libdoc/Bio::Tools::EUtilities::Cookie.3pm Manifying blib/lib/Bio/OntologyIO/InterProParser.pm -> blib/libdoc/Bio::Ontolog yIO::InterProParser.3pm Manifying blib/lib/Bio/SeqIO/chadoxml.pm -> blib/libdoc/Bio::SeqIO::chadoxml.3pm Manifying blib/lib/Bio/Index/Qual.pm -> blib/libdoc/Bio::Index::Qual.3pm Manifying blib/lib/Bio/Matrix/PSM/IO/masta.pm -> blib/libdoc/Bio::Matrix::PSM::IO::masta.3pm Manifying blib/lib/Bio/Annotation/Reference.pm -> blib/libdoc/Bio::Annotation::Reference.3pm Manifying blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm -> blib/libdoc/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Manifying blib/lib/Bio/Variation/IO.pm -> blib/libdoc/Bio::Variation::IO.3pm Manifying blib/lib/Bio/SearchIO/XML/PsiBlastHandler.pm -> blib/libdoc/Bio::SearchIO::XML::PsiBlastHandler.3pm Manifying blib/lib/Bio/Matrix/PSM/IO/meme.pm -> blib/libdoc/Bio::Matrix::PSM::IO::meme.3pm Manifying blib/lib/Bio/Seq/MetaI.pm -> blib/libdoc/Bio::Seq::MetaI.3pm Manifying blib/lib/Bio/TreeIO/pag.pm -> blib/libdoc/Bio::TreeIO::pag.3pm Manifying blib/lib/Bio/LiveSeq/IO/Loader.pm -> blib/libdoc/Bio::LiveSeq::IO::Loader.3pm Manifying blib/lib/Bio/AlignIO/arp.pm -> blib/libdoc/Bio::AlignIO::arp.3pm Manifying blib/lib/Bio/Ontology/SimpleOntologyEngine.pm -> blib/libdoc/Bio::Ontology::SimpleOntologyEngine.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/NetPhos.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::NetPhos.3pm Manifying blib/lib/Bio/Ontology/TermI.pm -> blib/libdoc/Bio::Ontology::TermI.3pm Manifying blib/lib/Bio/SeqFeature/PositionProxy.pm -> blib/libdoc/Bio::SeqFeature::PositionProxy.3pm Manifying blib/lib/Bio/SeqEvolution/DNAPoint.pm -> blib/libdoc/Bio::SeqEvolution::DNAPoint.3pm Manifying blib/lib/Bio/SeqIO/ace.pm -> blib/libdoc/Bio::SeqIO::ace.3pm Manifying blib/lib/Bio/Map/CytoPosition.pm -> blib/libdoc/Bio::Map::CytoPosition.3pm Manifying blib/lib/Bio/Tools/ERPIN.pm -> blib/libdoc/Bio::Tools::ERPIN.3pm Manifying blib/lib/Bio/Cluster/UniGene.pm -> blib/libdoc/Bio::Cluster::UniGene.3pm Manifying blib/lib/Bio/DB/LocationI.pm -> blib/libdoc/Bio::DB::LocationI.3pm Manifying blib/lib/Bio/SeqI.pm -> blib/libdoc/Bio::SeqI.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm Manifying blib/lib/Bio/DB/SeqFeature.pm -> blib/libdoc/Bio::DB::SeqFeature.3pm Manifying blib/lib/Bio/Search/Hit/GenericHit.pm -> blib/libdoc/Bio::Search::Hit::GenericHit.3pm Manifying blib/lib/Bio/Tools/EUtilities/EUtilParameters.pm -> blib/libdoc/Bio::Tools::EUtilities::EUtilParameters.3pm Manifying blib/lib/Bio/Matrix/PSM/IO/mast.pm -> blib/libdoc/Bio::Matrix::PSM::IO::mast.3pm Manifying blib/lib/Bio/SearchIO/blasttable.pm -> blib/libdoc/Bio::SearchIO::blasttable.3pm Manifying blib/lib/Bio/Tools/Genewise.pm -> blib/libdoc/Bio::Tools::Genewise.3pm Manifying blib/lib/Bio/Tools/Primer3.pm -> blib/libdoc/Bio::Tools::Primer3.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::berkeleydb.3pm Manifying blib/lib/Bio/Map/EntityI.pm -> blib/libdoc/Bio::Map::EntityI.3pm Manifying blib/lib/Bio/Tools/Spidey/Results.pm -> blib/libdoc/Bio::Tools::Spidey::Results.3pm Manifying blib/lib/Bio/SearchIO/waba.pm -> blib/libdoc/Bio::SearchIO::waba.3pm Manifying blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm -> blib/libdoc/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm Manifying blib/lib/Bio/Biblio/IO/pubmed2ref.pm -> blib/libdoc/Bio::Biblio::IO::pubmed2ref.3pm Manifying blib/lib/Bio/Species.pm -> blib/libdoc/Bio::Species.3pm Manifying blib/lib/Bio/Matrix/PSM/InstanceSite.pm -> blib/libdoc/Bio::Matrix::PSM::InstanceSite.3pm Manifying blib/lib/Bio/Variation/AAReverseMutate.pm -> blib/libdoc/Bio::Variation::AAReverseMutate.3pm Manifying blib/lib/Bio/Tools/SiRNA/Ruleset/saigo.pm -> blib/libdoc/Bio::Tools::SiRNA::Ruleset::saigo.3pm Manifying blib/lib/Bio/Tools/Sim4/Exon.pm -> blib/libdoc/Bio::Tools::Sim4::Exon.3pm Manifying blib/lib/Bio/Tools/Run/StandAloneWUBlast.pm -> blib/libdoc/Bio::Tools::Run::StandAloneWUBlast.3pm Manifying blib/lib/Bio/Restriction/EnzymeCollection.pm -> blib/libdoc/Bio::Restriction::EnzymeCollection.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/memory.pm -> blib/libdoc/Bio::DB ::GFF::Adaptor::memory.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::processed_transcript.3pm Manifying blib/lib/Bio/DB/Ace.pm -> blib/libdoc/Bio::DB::Ace.3pm Manifying blib/lib/Bio/LiveSeq/DNA.pm -> blib/libdoc/Bio::LiveSeq::DNA.3pm Manifying blib/lib/Bio/Tools/HMMER/Results.pm -> blib/libdoc/Bio::Tools::HMMER::Results.3pm Manifying blib/lib/Bio/Seq.pm -> blib/libdoc/Bio::Seq.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_softberry.3pm Manifying blib/lib/Bio/Ontology/OBOEngine.pm -> blib/libdoc/Bio::Ontology::OBOEngine.3pm Manifying blib/lib/Bio/SeqIO/ztr.pm -> blib/libdoc/Bio::SeqIO::ztr.3pm Manifying blib/lib/Bio/MapIO.pm -> blib/libdoc/Bio::MapIO.3pm Manifying blib/lib/Bio/DB/DBFetch.pm -> blib/libdoc/Bio::DB::DBFetch.3pm Manifying blib/lib/Bio/Root/Test.pm -> blib/libdoc/Bio::Root::Test.3pm Manifying blib/lib/Bio/Biblio/BookArticle.pm -> blib/libdoc/Bio::Biblio::BookArticle.3pm Manifying blib/lib/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm -> blib/libdoc/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3pm Manifying blib/lib/Bio/Tools/Coil.pm -> blib/libdoc/Bio::Tools::Coil.3pm Manifying blib/lib/Bio/PopGen/Population.pm -> blib/libdoc/Bio::PopGen::Population.3pm Manifying blib/lib/Bio/Matrix/PSM/PsmHeaderI.pm -> blib/libdoc/Bio::Matrix::PSM::PsmHeaderI.3pm Manifying blib/lib/Bio/Restriction/EnzymeI.pm -> blib/libdoc/Bio::Restriction::EnzymeI.3pm Manifying blib/lib/Bio/SeqFeature/Gene/GeneStructureI.pm -> blib/libdoc/Bio::SeqFeature::Gene::GeneStructureI.3pm Manifying blib/lib/Bio/Biblio/MedlineBook.pm -> blib/libdoc/Bio::Biblio::MedlineBook.3pm Manifying blib/lib/Bio/Biblio/Proceeding.pm -> blib/libdoc/Bio::Biblio::Proceeding.3pm Manifying blib/lib/Bio/Index/Fastq.pm -> blib/libdoc/Bio::Index::Fastq.3pm Manifying blib/lib/Bio/SeqUtils.pm -> blib/libdoc/Bio::SeqUtils.3pm Manifying blib/lib/Bio/DB/Failover.pm -> blib/libdoc/Bio::DB::Failover.3pm Manifying blib/lib/Bio/SeqIO/asciitree.pm -> blib/libdoc/Bio::SeqIO::asciitree.3pm Manifying blib/lib/Bio/Matrix/PSM/SiteMatrixI.pm -> blib/libdoc/Bio::Matrix::PSM::SiteMatrixI.3pm Manifying blib/lib/Bio/Tools/Gel.pm -> blib/libdoc/Bio::Tools::Gel.3pm Manifying blib/lib/Bio/DB/Registry.pm -> blib/libdoc/Bio::DB::Registry.3pm Manifying blib/lib/Bio/SeqIO/game/featHandler.pm -> blib/libdoc/Bio::SeqIO::game::featHandler.3pm Manifying blib/lib/Bio/Search/HSP/BlastHSP.pm -> blib/libdoc/Bio::Search::HSP::BlastHSP.3pm Manifying blib/lib/Bio/Factory/SequenceFactoryI.pm -> blib/libdoc/Bio::Factory::SequenceFactoryI.3pm Manifying blib/lib/Bio/Biblio/TechReport.pm -> blib/libdoc/Bio::Biblio::TechReport.3pm Manifying blib/lib/Bio/Tools/Blat.pm -> blib/libdoc/Bio::Tools::Blat.3pm Manifying blib/lib/Bio/Tools/Protparam.pm -> blib/libdoc/Bio::Tools::Protparam.3pm Manifying blib/lib/Bio/SeqIO/metafasta.pm -> blib/libdoc/Bio::SeqIO::metafasta.3pm Manifying blib/lib/Bio/Expression/Sample.pm -> blib/libdoc/Bio::Expression::Sample.3pm Manifying blib/lib/Bio/Map/CytoMarker.pm -> blib/libdoc/Bio::Map::CytoMarker.3pm Manifying blib/lib/Bio/Tools/TargetP.pm -> blib/libdoc/Bio::Tools::TargetP.3pm Manifying blib/lib/Bio/DB/NCBIHelper.pm -> blib/libdoc/Bio::DB::NCBIHelper.3pm Manifying blib/lib/Bio/SeqIO/table.pm -> blib/libdoc/Bio::SeqIO::table.3pm Manifying blib/lib/Bio/Root/Root.pm -> blib/libdoc/Bio::Root::Root.3pm Manifying blib/lib/Bio/Tools/Spidey/Exon.pm -> blib/libdoc/Bio::Tools::Spidey::Exon.3pm Manifying blib/lib/Bio/Tools/EUtilities/EUtilDataI.pm -> blib/libdoc/Bio::Tools::EUtilities::EUtilDataI.3pm Manifying blib/lib/Bio/AlignIO/Handler/GenericAlignHandler.pm -> blib/libdoc/Bio::AlignIO::Handler::GenericAlignHandler.3pm Manifying blib/lib/Bio/Event/EventGeneratorI.pm -> blib/libdoc/Bio::Event::EventGeneratorI.3pm Manifying blib/lib/Bio/SearchIO/exonerate.pm -> blib/libdoc/Bio::SearchIO::exonerate.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/ace.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::ace.3pm Manifying blib/lib/Bio/DB/QueryI.pm -> blib/libdoc/Bio::DB::QueryI.3 pm Manifying blib/lib/Bio/Factory/SeqAnalysisParserFactory.pm -> blib/libdoc/Bio::Factory::SeqAnalysisParserFactory.3pm Manifying blib/lib/Bio/AlignIO/maf.pm -> blib/libdoc/Bio::AlignIO::maf.3pm Manifying blib/lib/Bio/Tools/Run/StandAloneNCBIBlast.pm -> blib/libdoc/Bio::Tools::Run::StandAloneNCBIBlast.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/Sopma.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::Sopma.3pm Manifying blib/lib/Bio/Search/Hit/BlastHit.pm -> blib/libdoc/Bio::Search::Hit::BlastHit.3pm Manifying blib/lib/Bio/DB/SeqHound.pm -> blib/libdoc/Bio::DB::SeqHound.3pm Manifying blib/lib/Bio/SeqIO/game/gameHandler.pm -> blib/libdoc/Bio::SeqIO::game::gameHandler.3pm Manifying blib/lib/Bio/SeqFeature/Generic.pm -> blib/libdoc/Bio::SeqFeature::Generic.3pm Manifying blib/lib/Bio/Search/SearchUtils.pm -> blib/libdoc/Bio::Search::SearchUtils.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3pm Manifying blib/lib/Bio/Factory/ObjectBuilderI.pm -> blib/libdoc/Bio::Factory::ObjectBuilderI.3pm Manifying blib/lib/Bio/Map/Relative.pm -> blib/libdoc/Bio::Map::Relative.3pm Manifying blib/lib/Bio/Map/Position.pm -> blib/libdoc/Bio::Map::Position.3pm Manifying blib/lib/Bio/Symbol/DNAAlphabet.pm -> blib/libdoc/Bio::Symbol::DNAAlphabet.3pm Manifying blib/lib/Bio/Root/Utilities.pm -> blib/libdoc/Bio::Root::Utilities.3pm Manifying blib/lib/Bio/Matrix/MatrixI.pm -> blib/libdoc/Bio::Matrix::MatrixI.3pm Manifying blib/lib/Bio/AlignIO/largemultifasta.pm -> blib/libdoc/Bio::AlignIO::largemultifasta.3pm Manifying blib/lib/Bio/DB/MeSH.pm -> blib/libdoc/Bio::DB::MeSH.3pm Manifying blib/lib/Bio/SeqIO/pir.pm -> blib/libdoc/Bio::SeqIO::pir.3pm Manifying blib/lib/Bio/Variation/IO/flat.pm -> blib/libdoc/Bio::Variation::IO::flat.3pm Manifying blib/lib/Bio/Coordinate/GeneMapper.pm -> blib/libdoc/Bio::Coordinate::GeneMapper.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_twinscan.3pm Manifying blib/lib/Bio/SearchIO/fasta.pm -> blib/libdoc/Bio::SearchIO::fasta.3pm Manifying blib/lib/Bio/SeqFeature/Computation.pm -> blib/libdoc/Bio::SeqFeature::Computation.3pm Manifying blib/lib/Bio/Annotation/Target.pm -> blib/libdoc/Bio::Annotation::Target.3pm Manifying blib/lib/Bio/Tools/ipcress.pm -> blib/libdoc/Bio::Tools::ipcress.3pm Manifying blib/lib/Bio/ClusterIO/dbsnp.pm -> blib/libdoc/Bio::ClusterIO::dbsnp.3pm Manifying blib/lib/Bio/Search/HSP/PSLHSP.pm -> blib/libdoc/Bio::Search::HSP::PSLHSP.3pm Manifying blib/lib/Bio/ClusterI.pm -> blib/libdoc/Bio::ClusterI.3pm Manifying blib/lib/Bio/DB/GFF/Typename.pm -> blib/libdoc/Bio::DB::GFF::Typename.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/coding.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::coding.3pm Manifying blib/lib/Bio/Index/Blast.pm -> blib/libdoc/Bio::Index::Blast.3pm Manifying blib/lib/Bio/Tree/NodeNHX.pm -> blib/libdoc/Bio::Tree::NodeNHX.3pm Manifying blib/lib/Bio/Biblio/Organisation.pm -> blib/libdoc/Bio::Biblio::Organisation.3pm Manifying blib/lib/Bio/Ontology/OBOterm.pm -> blib/libdoc/Bio::Ontology::OBOterm.3pm Manifying blib/lib/Bio/Structure/Residue.pm -> blib/libdoc/Bio::Structure::Residue.3pm Manifying blib/lib/Bio/AnalysisResultI.pm -> blib/libdoc/Bio::AnalysisResultI.3pm Manifying blib/lib/Bio/Coordinate/Result/Gap.pm -> blib/libdoc/Bio::Coordinate::Result::Gap.3pm Manifying blib/lib/Bio/DB/Expression.pm -> blib/libdoc/Bio::DB::Expression.3pm Manifying blib/lib/Bio/SeqIO/excel.pm -> blib/libdoc/Bio::SeqIO::excel.3pm Manifying blib/lib/Bio/Tree/Compatible.pm -> blib/libdoc/Bio::Tree::Compatible.3pm Manifying blib/lib/Bio/AlignIO/emboss.pm -> blib/libdoc/Bio::AlignIO::emboss.3pm Manifying blib/lib/Bio/Search/HSP/HmmpfamHSP.pm -> blib/libdoc/Bio::Search::HSP::HmmpfamHSP.3pm Manifying blib/lib/Bio/Tools/Prints.pm -> blib/libdoc/Bio::Tools::Prints.3pm Manifying blib/lib/Bio/Search/Iteration/GenericIteration.pm -> blib/libdoc/Bio::Search::Iteration::GenericIteration.3pm Manifying blib/lib/Bio/SeqFeature/Primer.pm -> blib/libdoc/Bio::SeqFeature::Primer.3pm Manifying blib/lib/Bio/Cl uster/SequenceFamily.pm -> blib/libdoc/Bio::Cluster::SequenceFamily.3pm Manifying blib/lib/Bio/Assembly/ScaffoldI.pm -> blib/libdoc/Bio::Assembly::ScaffoldI.3pm Manifying blib/lib/Bio/Assembly/Singlet.pm -> blib/libdoc/Bio::Assembly::Singlet.3pm Manifying blib/lib/Bio/Search/HSP/HSPI.pm -> blib/libdoc/Bio::Search::HSP::HSPI.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::DBI::mysql.3pm Manifying blib/lib/Bio/SeqIO/game/gameSubs.pm -> blib/libdoc/Bio::SeqIO::game::gameSubs.3pm Manifying blib/lib/Bio/Biblio/MedlineJournalArticle.pm -> blib/libdoc/Bio::Biblio::MedlineJournalArticle.3pm Manifying blib/lib/Bio/Das/FeatureTypeI.pm -> blib/libdoc/Bio::Das::FeatureTypeI.3pm Manifying blib/lib/Bio/Search/HSP/HSPFactory.pm -> blib/libdoc/Bio::Search::HSP::HSPFactory.3pm Manifying blib/lib/Bio/SeqIO/gbdriver.pm -> blib/libdoc/Bio::SeqIO::gbdriver.3pm Manifying blib/lib/Bio/Symbol/Symbol.pm -> blib/libdoc/Bio::Symbol::Symbol.3pm Manifying blib/lib/Bio/Tools/Prediction/Exon.pm -> blib/libdoc/Bio::Tools::Prediction::Exon.3pm Manifying blib/lib/Bio/DB/BiblioI.pm -> blib/libdoc/Bio::DB::BiblioI.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/GOR4.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::GOR4.3pm Manifying blib/lib/Bio/Map/Marker.pm -> blib/libdoc/Bio::Map::Marker.3pm Manifying blib/lib/Bio/Root/Version.pm -> blib/libdoc/Bio::Root::Version.3pm Manifying blib/lib/Bio/SeqIO.pm -> blib/libdoc/Bio::SeqIO.3pm Manifying blib/lib/Bio/Location/FuzzyLocationI.pm -> blib/libdoc/Bio::Location::FuzzyLocationI.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_genscan.3pm Manifying blib/lib/Bio/PopGen/IO/phase.pm -> blib/libdoc/Bio::PopGen::IO::phase.3pm Manifying blib/lib/Bio/Align/DNAStatistics.pm -> blib/libdoc/Bio::Align::DNAStatistics.3pm Manifying blib/lib/Bio/Biblio/PubmedJournalArticle.pm -> blib/libdoc/Bio::Biblio::PubmedJournalArticle.3pm Manifying blib/lib/Bio/Tools/EUtilities/Summary.pm -> blib/libdoc/Bio::Tools::EUtilities::Summary.3pm Manifying blib/lib/Bio/Tools/Eponine.pm -> blib/libdoc/Bio::Tools::Eponine.3pm Manifying blib/lib/Bio/Variation/Allele.pm -> blib/libdoc/Bio::Variation::Allele.3pm Manifying blib/lib/Bio/Phenotype/Phenotype.pm -> blib/libdoc/Bio::Phenotype::Phenotype.3pm Manifying blib/lib/Bio/Factory/SeqAnalysisParserFactoryI.pm -> blib/libdoc/Bio::Factory::SeqAnalysisParserFactoryI.3pm Manifying blib/lib/Bio/SeqIO/swiss.pm -> blib/libdoc/Bio::SeqIO::swiss.3pm Manifying blib/lib/Bio/DB/ReferenceI.pm -> blib/libdoc/Bio::DB::ReferenceI.3pm Manifying blib/lib/Bio/ClusterIO.pm -> blib/libdoc/Bio::ClusterIO.3pm Manifying blib/lib/Bio/DB/Taxonomy/entrez.pm -> blib/libdoc/Bio::DB::Taxonomy::entrez.3pm Manifying blib/lib/Bio/Map/GenePosition.pm -> blib/libdoc/Bio::Map::GenePosition.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_sanger22.3pm Manifying blib/lib/Bio/Map/FPCMarker.pm -> blib/libdoc/Bio::Map::FPCMarker.3pm Manifying blib/lib/Bio/AlignIO/mase.pm -> blib/libdoc/Bio::AlignIO::mase.3pm Manifying blib/lib/Bio/OntologyIO/soflat.pm -> blib/libdoc/Bio::OntologyIO::soflat.3pm Manifying blib/lib/Bio/MapIO/fpc.pm -> blib/libdoc/Bio::MapIO::fpc.3pm Manifying blib/lib/Bio/Coordinate/Result/Match.pm -> blib/libdoc/Bio::Coordinate::Result::Match.3pm Manifying blib/lib/Bio/Search/Hit/PsiBlastHit.pm -> blib/libdoc/Bio::Search::Hit::PsiBlastHit.3pm Manifying blib/lib/Bio/Restriction/IO/bairoch.pm -> blib/libdoc/Bio::Restriction::IO::bairoch.3pm Manifying blib/lib/Bio/PopGen/IO/csv.pm -> blib/libdoc/Bio::PopGen::IO::csv.3pm Manifying blib/lib/Bio/Biblio/IO/medlinexml.pm -> blib/libdoc/Bio::Biblio::IO::medlinexml.3pm Manifying blib/lib/Bio/Search/Result/WABAResult.pm -> blib/libdoc/Bio::Search::Result::WABAResult.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/none.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::none.3pm Manifying blib/lib/Bio/Search/Result/HmmpfamResult.pm -> blib/libdoc/Bio::Search::Result::HmmpfamResult.3pm Manifying blib/lib/Bio/DB/GenBank.pm -> blib/libdoc/Bio::DB::GenBank.3pm Manifying blib/lib/Bio/AlignIO/psi.pm -> blib/libdoc/Bio::AlignIO::psi.3pm Manifying blib/lib/Bio/SeqIO/agave.pm -> blib/libdoc/Bio::SeqIO::agave.3pm Manifying blib/lib/Bio/SeqIO/swissdriver.pm -> blib/libdoc/Bio::SeqIO::swissdriver.3pm Manifying blib/lib/Bio/Variation/VariantI.pm -> blib/libdoc/Bio::Variation::VariantI.3pm Manifying blib/lib/Bio/SeqFeature/Similarity.pm -> blib/libdoc/Bio::SeqFeature::Similarity.3pm Manifying blib/lib/Bio/DescribableI.pm -> blib/libdoc/Bio::DescribableI.3pm Manifying blib/lib/Bio/Biblio/IO/medline2ref.pm -> blib/libdoc/Bio::Biblio::IO::medline2ref.3pm Manifying blib/lib/Bio/Ontology/OntologyStore.pm -> blib/libdoc/Bio::Ontology::OntologyStore.3pm Manifying blib/lib/Bio/SeqFeature/Gene/Promoter.pm -> blib/libdoc/Bio::SeqFeature::Gene::Promoter.3pm Manifying blib/lib/Bio/HandlerBaseI.pm -> blib/libdoc/Bio::HandlerBaseI.3pm Manifying blib/lib/Bio/Ontology/Path.pm -> blib/libdoc/Bio::Ontology::Path.3pm Manifying blib/lib/Bio/Ontology/TermFactory.pm -> blib/libdoc/Bio::Ontology::TermFactory.3pm Manifying blib/lib/Bio/Restriction/Analysis.pm -> blib/libdoc/Bio::Restriction::Analysis.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_acembly.3pm Manifying blib/lib/Bio/Factory/ObjectFactoryI.pm -> blib/libdoc/Bio::Factory::ObjectFactoryI.3pm Manifying blib/lib/Bio/Annotation/SimpleValue.pm -> blib/libdoc/Bio::Annotation::SimpleValue.3pm Manifying blib/lib/Bio/Align/StatisticsI.pm -> blib/libdoc/Bio::Align::StatisticsI.3pm Manifying blib/lib/Bio/Tree/TreeFunctionsI.pm -> blib/libdoc/Bio::Tree::TreeFunctionsI.3pm Manifying blib/lib/Bio/Restriction/IO/itype2.pm -> blib/libdoc/Bio::Restriction::IO::itype2.3pm Manifying blib/lib/Bio/SeqIO/entrezgene.pm -> blib/libdoc/Bio::SeqIO::entrezgene.3pm Manifying blib/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm -> blib/libdoc/Bio::Ontology::SimpleGOEngine::GraphAdaptor02.3pm Manifying blib/lib/Bio/SeqIO/tigrxml.pm -> blib/libdoc/Bio::SeqIO::tigrxml.3pm Manifying blib/lib/Bio/TreeIO/nexus.pm -> blib/libdoc/Bio::TreeIO::nexus.3pm Manifying blib/lib/Bio/Tools/RandomDistFunctions.pm -> blib/libdoc/Bio::Tools::RandomDistFunctions.3pm Manifying blib/lib/Bio/DB/Flat.pm -> blib/libdoc/Bio::DB::Flat.3pm Manifying blib/lib/Bio/SeqIO/phd.pm -> blib/libdoc/Bio::SeqIO::phd.3pm Manifying blib/lib/Bio/Tools/Fgenesh.pm -> blib/libdoc/Bio::Tools::Fgenesh.3pm Manifying blib/lib/Bio/Tools/EUtilities/Summary/DocSum.pm -> blib/libdoc/Bio::Tools::EUtilities::Summary::DocSum.3pm Manifying blib/lib/Bio/Matrix/PhylipDist.pm -> blib/libdoc/Bio::Matrix::PhylipDist.3pm Manifying blib/lib/Bio/DB/CUTG.pm -> blib/libdoc/Bio::DB::CUTG.3pm Manifying blib/lib/Bio/Map/CytoMap.pm -> blib/libdoc/Bio::Map::CytoMap.3pm Manifying blib/lib/Bio/DB/TFBS/transfac_pro.pm -> blib/libdoc/Bio::DB::TFBS::transfac_pro.3pm Manifying blib/lib/Bio/Expression/Platform.pm -> blib/libdoc/Bio::Expression::Platform.3pm Manifying blib/lib/Bio/DB/GFF/RelSegment.pm -> blib/libdoc/Bio::DB::GFF::RelSegment.3pm Manifying blib/lib/Bio/Tools/ECnumber.pm -> blib/libdoc/Bio::Tools::ECnumber.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm Manifying blib/lib/Bio/Tools/Alignment/Consed.pm -> blib/libdoc/Bio::Tools::Alignment::Consed.3pm Manifying blib/lib/Bio/OntologyIO/obo.pm -> blib/libdoc/Bio::OntologyIO::obo.3pm Manifying blib/lib/Bio/Tree/Tree.pm -> blib/libdoc/Bio::Tree::Tree.3pm Manifying blib/lib/Bio/FeatureHolderI.pm -> blib/libdoc/Bio::FeatureHolderI.3pm Manifying blib/lib/Bio/Tree/AlleleNode.pm -> blib/libdoc/Bio::Tree::AlleleNode.3pm Manifying blib/lib/Bio/Tools/IUPAC.pm -> blib/libdoc/Bio::Tools::IUPAC.3pm Manifying blib/lib/Bio/LiveSeq/Range.pm -> blib/libdoc/Bio::LiveSeq::Range.3pm Manifying blib/lib/Bio/Tree/AnnotatableNode.pm -> blib/libdoc/Bio::Tree::AnnotatableNode.3pm Manifying blib/lib/Bio/SearchIO/Writer/GbrowseGFF.pm -> blib/libdoc/Bio::SearchIO::Writer::GbrowseGFF.3pm Manifying blib/lib/Bio/PrimarySeqI.pm -> blib/libdoc/ Bio::PrimarySeqI.3pm Manifying blib/lib/Bio/Tools/isPcr.pm -> blib/libdoc/Bio::Tools::isPcr.3pm Manifying blib/lib/Bio/Tools/EPCR.pm -> blib/libdoc/Bio::Tools::EPCR.3pm Manifying blib/lib/Bio/Index/Stockholm.pm -> blib/libdoc/Bio::Index::Stockholm.3pm Manifying blib/lib/Bio/Tools/Phylo/Molphy/Result.pm -> blib/libdoc/Bio::Tools::Phylo::Molphy::Result.3pm Manifying blib/lib/Bio/Align/AlignI.pm -> blib/libdoc/Bio::Align::AlignI.3pm Manifying blib/lib/Bio/Seq/LargePrimarySeq.pm -> blib/libdoc/Bio::Seq::LargePrimarySeq.3pm Manifying blib/lib/Bio/AlignIO/proda.pm -> blib/libdoc/Bio::AlignIO::proda.3pm Manifying blib/lib/Bio/Tools/Genomewise.pm -> blib/libdoc/Bio::Tools::Genomewise.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::pg_fts.3pm Manifying blib/lib/Bio/DB/Flat/BDB/swiss.pm -> blib/libdoc/Bio::DB::Flat::BDB::swiss.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/memory.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::memory.3pm Manifying blib/lib/Bio/SeqIO/game.pm -> blib/libdoc/Bio::SeqIO::game.3pm Manifying blib/lib/Bio/SeqIO/FTHelper.pm -> blib/libdoc/Bio::SeqIO::FTHelper.3pm Manifying blib/lib/Bio/LocatableSeq.pm -> blib/libdoc/Bio::LocatableSeq.3pm Manifying blib/lib/Bio/Tools/EUtilities/Info/FieldInfo.pm -> blib/libdoc/Bio::Tools::EUtilities::Info::FieldInfo.3pm Manifying blib/lib/Bio/Search/HSP/GenericHSP.pm -> blib/libdoc/Bio::Search::HSP::GenericHSP.3pm Manifying blib/lib/Bio/SearchIO/XML/BlastHandler.pm -> blib/libdoc/Bio::SearchIO::XML::BlastHandler.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::berkeleydb.3pm Manifying blib/lib/Bio/SearchIO/Writer/BSMLResultWriter.pm -> blib/libdoc/Bio::SearchIO::Writer::BSMLResultWriter.3pm Manifying blib/lib/Bio/FeatureIO/gff.pm -> blib/libdoc/Bio::FeatureIO::gff.3pm Manifying blib/lib/Bio/Tools/CodonTable.pm -> blib/libdoc/Bio::Tools::CodonTable.3pm Manifying blib/lib/Bio/AlignIO/bl2seq.pm -> blib/libdoc/Bio::AlignIO::bl2seq.3pm Manifying blib/lib/Bio/SeqIO/fasta.pm -> blib/libdoc/Bio::SeqIO::fasta.3pm Manifying blib/lib/Bio/Cluster/FamilyI.pm -> blib/libdoc/Bio::Cluster::FamilyI.3pm Manifying blib/lib/Bio/Ontology/Term.pm -> blib/libdoc/Bio::Ontology::Term.3pm Manifying blib/lib/Bio/Location/Fuzzy.pm -> blib/libdoc/Bio::Location::Fuzzy.3pm Manifying blib/lib/Bio/Factory/FTLocationFactory.pm -> blib/libdoc/Bio::Factory::FTLocationFactory.3pm Manifying blib/lib/Bio/TreeIO/TreeEventBuilder.pm -> blib/libdoc/Bio::TreeIO::TreeEventBuilder.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator.pm -> blib/libdoc/Bio::DB::GFF::Aggregator.3pm Manifying blib/lib/Bio/LiveSeq/Repeat_Region.pm -> blib/libdoc/Bio::LiveSeq::Repeat_Region.3pm Manifying blib/lib/Bio/Restriction/Enzyme/MultiCut.pm -> blib/libdoc/Bio::Restriction::Enzyme::MultiCut.3pm Manifying blib/lib/Bio/Matrix/PSM/IO.pm -> blib/libdoc/Bio::Matrix::PSM::IO.3pm Manifying blib/lib/Bio/Map/MappableI.pm -> blib/libdoc/Bio::Map::MappableI.3pm Manifying blib/lib/Bio/Phenotype/OMIM/OMIMentry.pm -> blib/libdoc/Bio::Phenotype::OMIM::OMIMentry.3pm Manifying blib/lib/Bio/Seq/TraceI.pm -> blib/libdoc/Bio::Seq::TraceI.3pm Manifying blib/lib/Bio/Map/PositionI.pm -> blib/libdoc/Bio::Map::PositionI.3pm Manifying blib/lib/Bio/AlignIO/stockholm.pm -> blib/libdoc/Bio::AlignIO::stockholm.3pm Manifying blib/lib/Bio/AlignIO/selex.pm -> blib/libdoc/Bio::AlignIO::selex.3pm Manifying blib/lib/Bio/DB/GenericWebAgent.pm -> blib/libdoc/Bio::DB::GenericWebAgent.3pm Manifying blib/lib/Bio/SeqFeature/SiRNA/Oligo.pm -> blib/libdoc/Bio::SeqFeature::SiRNA::Oligo.3pm Manifying blib/lib/Bio/Ontology/OntologyI.pm -> blib/libdoc/Bio::Ontology::OntologyI.3pm Manifying blib/lib/Bio/Das/SegmentI.pm -> blib/libdoc/Bio::Das::SegmentI.3pm Manifying blib/lib/Bio/WebAgent.pm -> blib/libdoc/Bio::WebAgent.3pm Manifying blib/lib/Bio/TreeIO/cluster.pm -> blib/libdoc/Bio::TreeIO::cluster.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/bdb.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::bdb.3pm Manifying blib/lib/Bio/Seq/BaseSeqProcessor.pm -> blib/libdoc/Bio::Seq::BaseSeqProcesso r.3pm Manifying blib/lib/Bio/DB/GFF/Util/Rearrange.pm -> blib/libdoc/Bio::DB::GFF::Util::Rearrange.3pm Manifying blib/lib/Bio/AnalysisI.pm -> blib/libdoc/Bio::AnalysisI.3pm Manifying blib/lib/Bio/OntologyIO/simplehierarchy.pm -> blib/libdoc/Bio::OntologyIO::simplehierarchy.3pm Manifying blib/lib/Bio/DB/HIV/HIVAnnotProcessor.pm -> blib/libdoc/Bio::DB::HIV::HIVAnnotProcessor.3pm Manifying blib/lib/Bio/Search/HSP/PsiBlastHSP.pm -> blib/libdoc/Bio::Search::HSP::PsiBlastHSP.3pm Manifying blib/lib/Bio/AlignIO/phylip.pm -> blib/libdoc/Bio::AlignIO::phylip.3pm Manifying blib/lib/Bio/Ontology/DocumentRegistry.pm -> blib/libdoc/Bio::Ontology::DocumentRegistry.3pm Manifying blib/lib/Bio/Coordinate/Chain.pm -> blib/libdoc/Bio::Coordinate::Chain.3pm Manifying blib/lib/Bio/Matrix/PSM/Psm.pm -> blib/libdoc/Bio::Matrix::PSM::Psm.3pm Manifying blib/lib/Bio/OntologyIO/Handlers/InterProHandler.pm -> blib/libdoc/Bio::OntologyIO::Handlers::InterProHandler.3pm Manifying blib/lib/Bio/Align/PairwiseStatistics.pm -> blib/libdoc/Bio::Align::PairwiseStatistics.3pm Manifying blib/lib/Bio/Tools/SiRNA.pm -> blib/libdoc/Bio::Tools::SiRNA.3pm Manifying blib/lib/Bio/Ontology/OntologyEngineI.pm -> blib/libdoc/Bio::Ontology::OntologyEngineI.3pm Manifying blib/lib/Bio/AlignIO/pfam.pm -> blib/libdoc/Bio::AlignIO::pfam.3pm Manifying blib/lib/Bio/Taxonomy/FactoryI.pm -> blib/libdoc/Bio::Taxonomy::FactoryI.3pm Manifying blib/lib/Bio/SeqFeature/Lite.pm -> blib/libdoc/Bio::SeqFeature::Lite.3pm Manifying blib/lib/Bio/TreeIO/lintree.pm -> blib/libdoc/Bio::TreeIO::lintree.3pm Manifying blib/lib/Bio/Tools/EUtilities/Query/GlobalQuery.pm -> blib/libdoc/Bio::Tools::EUtilities::Query::GlobalQuery.3pm Manifying blib/lib/Bio/Tools/Infernal.pm -> blib/libdoc/Bio::Tools::Infernal.3pm Manifying blib/lib/Bio/SearchIO/hmmer_pull.pm -> blib/libdoc/Bio::SearchIO::hmmer_pull.3pm Manifying blib/lib/Bio/DB/SeqVersion.pm -> blib/libdoc/Bio::DB::SeqVersion.3pm Manifying blib/lib/Bio/Tools/Phylo/PAML.pm -> blib/libdoc/Bio::Tools::Phylo::PAML.3pm Manifying blib/lib/Bio/Search/StatisticsI.pm -> blib/libdoc/Bio::Search::StatisticsI.3pm Manifying blib/lib/Bio/SimpleAlign.pm -> blib/libdoc/Bio::SimpleAlign.3pm Manifying blib/lib/Bio/Factory/TreeFactoryI.pm -> blib/libdoc/Bio::Factory::TreeFactoryI.3pm Manifying blib/lib/Bio/Tools/RepeatMasker.pm -> blib/libdoc/Bio::Tools::RepeatMasker.3pm Manifying blib/lib/Bio/Map/GeneMap.pm -> blib/libdoc/Bio::Map::GeneMap.3pm Manifying blib/lib/Bio/DB/RandomAccessI.pm -> blib/libdoc/Bio::DB::RandomAccessI.3pm Manifying blib/lib/Bio/PopGen/Marker.pm -> blib/libdoc/Bio::PopGen::Marker.3pm Manifying blib/lib/Bio/Matrix/Generic.pm -> blib/libdoc/Bio::Matrix::Generic.3pm Manifying blib/lib/Bio/Root/HTTPget.pm -> blib/libdoc/Bio::Root::HTTPget.3pm Manifying blib/lib/Bio/Index/SwissPfam.pm -> blib/libdoc/Bio::Index::SwissPfam.3pm Manifying blib/lib/Bio/TreeIO.pm -> blib/libdoc/Bio::TreeIO.3pm Manifying blib/lib/Bio/Search/Hit/PullHitI.pm -> blib/libdoc/Bio::Search::Hit::PullHitI.3pm Manifying blib/lib/Bio/Tools/EUtilities/Query.pm -> blib/libdoc/Bio::Tools::EUtilities::Query.3pm Manifying blib/lib/Bio/PopGen/Individual.pm -> blib/libdoc/Bio::PopGen::Individual.3pm Manifying blib/lib/Bio/Tools/GuessSeqFormat.pm -> blib/libdoc/Bio::Tools::GuessSeqFormat.3pm Manifying blib/lib/Bio/AlignIO/xmfa.pm -> blib/libdoc/Bio::AlignIO::xmfa.3pm Manifying blib/lib/Bio/Map/LinkageMap.pm -> blib/libdoc/Bio::Map::LinkageMap.3pm Manifying blib/lib/Bio/SearchIO/rnamotif.pm -> blib/libdoc/Bio::SearchIO::rnamotif.3pm Manifying blib/lib/Bio/SeqFeature/Gene/ExonI.pm -> blib/libdoc/Bio::SeqFeature::Gene::ExonI.3pm Manifying blib/lib/Bio/Biblio/Thesis.pm -> blib/libdoc/Bio::Biblio::Thesis.3pm Manifying blib/lib/Bio/Search/GenericStatistics.pm -> blib/libdoc/Bio::Search::GenericStatistics.3pm Manifying blib/lib/Bio/SeqIO/alf.pm -> blib/libdoc/Bio::SeqIO::alf.3pm Manifying blib/lib/Bio/Factory/SequenceProcessorI.pm -> blib/libdoc/Bio::Factory::SequenceProcessorI.3pm Manifying blib/lib/Bio/Search/Processor.pm -> blib/libdoc/Bio::Search::Processor.3pm Manifying blib/lib/Bio/AnalysisParser I.pm -> blib/libdoc/Bio::AnalysisParserI.3pm Manifying blib/lib/Bio/Search/Result/BlastPullResult.pm -> blib/libdoc/Bio::Search::Result::BlastPullResult.3pm Manifying blib/lib/Bio/Phenotype/OMIM/OMIMparser.pm -> blib/libdoc/Bio::Phenotype::OMIM::OMIMparser.3pm Manifying blib/lib/Bio/Biblio/Book.pm -> blib/libdoc/Bio::Biblio::Book.3pm Manifying blib/lib/Bio/DB/Biblio/eutils.pm -> blib/libdoc/Bio::DB::Biblio::eutils.3pm Manifying blib/lib/Bio/DBLinkContainerI.pm -> blib/libdoc/Bio::DBLinkContainerI.3pm Manifying blib/lib/Bio/Index/AbstractSeq.pm -> blib/libdoc/Bio::Index::AbstractSeq.3pm Manifying blib/lib/Bio/Location/Split.pm -> blib/libdoc/Bio::Location::Split.3pm Manifying blib/lib/Bio/Symbol/ProteinAlphabet.pm -> blib/libdoc/Bio::Symbol::ProteinAlphabet.3pm Manifying blib/lib/Bio/Annotation/StructuredValue.pm -> blib/libdoc/Bio::Annotation::StructuredValue.3pm Manifying blib/lib/Bio/SeqFeature/Gene/GeneStructure.pm -> blib/libdoc/Bio::SeqFeature::Gene::GeneStructure.3pm Manifying blib/lib/Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm -> blib/libdoc/Bio::Phenotype::OMIM::OMIMentryAllelicVariant.3pm Manifying blib/lib/Bio/Tools/EMBOSS/Palindrome.pm -> blib/libdoc/Bio::Tools::EMBOSS::Palindrome.3pm Manifying blib/lib/Bio/SearchIO/cross_match.pm -> blib/libdoc/Bio::SearchIO::cross_match.3pm Manifying blib/lib/Bio/Map/GeneRelative.pm -> blib/libdoc/Bio::Map::GeneRelative.3pm Manifying blib/lib/Bio/Map/MarkerI.pm -> blib/libdoc/Bio::Map::MarkerI.3pm Manifying blib/lib/Bio/SeqIO/tinyseq.pm -> blib/libdoc/Bio::SeqIO::tinyseq.3pm Manifying blib/lib/Bio/SearchIO/erpin.pm -> blib/libdoc/Bio::SearchIO::erpin.3pm Manifying blib/lib/Bio/Ontology/PathI.pm -> blib/libdoc/Bio::Ontology::PathI.3pm Manifying blib/lib/Bio/Expression/DataSet.pm -> blib/libdoc/Bio::Expression::DataSet.3pm Manifying blib/lib/Bio/PopGen/Simulation/Coalescent.pm -> blib/libdoc/Bio::PopGen::Simulation::Coalescent.3pm Manifying blib/lib/Bio/DB/SeqVersion/gi.pm -> blib/libdoc/Bio::DB::SeqVersion::gi.3pm Manifying blib/lib/Bio/Tools/TandemRepeatsFinder.pm -> blib/libdoc/Bio::Tools::TandemRepeatsFinder.3pm Manifying blib/lib/Bio/Taxonomy.pm -> blib/libdoc/Bio::Taxonomy.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/Mitoprot.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::Mitoprot.3pm Manifying blib/lib/Bio/Search/DatabaseI.pm -> blib/libdoc/Bio::Search::DatabaseI.3pm Manifying blib/lib/Bio/Tools/Phylo/Gumby.pm -> blib/libdoc/Bio::Tools::Phylo::Gumby.3pm Manifying blib/lib/Bio/DasI.pm -> blib/libdoc/Bio::DasI.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::LoadHelper.3pm Manifying blib/lib/Bio/SeqIO/tigr.pm -> blib/libdoc/Bio::SeqIO::tigr.3pm Manifying blib/lib/Bio/Index/GenBank.pm -> blib/libdoc/Bio::Index::GenBank.3pm Manifying blib/lib/Bio/FeatureIO/ptt.pm -> blib/libdoc/Bio::FeatureIO::ptt.3pm Manifying blib/lib/Bio/DB/Biblio/soap.pm -> blib/libdoc/Bio::DB::Biblio::soap.3pm Manifying blib/lib/Bio/SearchIO/hmmer.pm -> blib/libdoc/Bio::SearchIO::hmmer.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/Loader.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::Loader.3pm Manifying blib/lib/Bio/Tools/tRNAscanSE.pm -> blib/libdoc/Bio::Tools::tRNAscanSE.3pm Manifying blib/lib/Bio/Assembly/IO/tigr.pm -> blib/libdoc/Bio::Assembly::IO::tigr.3pm Manifying blib/lib/Bio/Biblio/JournalArticle.pm -> blib/libdoc/Bio::Biblio::JournalArticle.3pm Manifying blib/lib/Bio/Tools/Sim4/Results.pm -> blib/libdoc/Bio::Tools::Sim4::Results.3pm Manifying blib/lib/Bio/Index/Hmmer.pm -> blib/libdoc/Bio::Index::Hmmer.3pm Manifying blib/lib/Bio/MapIO/mapmaker.pm -> blib/libdoc/Bio::MapIO::mapmaker.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::biofetch.3pm Manifying blib/lib/Bio/Tools/Prediction/Gene.pm -> blib/libdoc/Bio::Tools::Prediction::Gene.3pm Manifying blib/lib/Bio/Root/Test/Warn.pm -> blib/libdoc/Bio::Root::Test::Warn.3pm Manifying blib/lib/Bio/AlignIO/meme.pm -> blib/libdoc/Bio::AlignIO::meme.3pm Manifying blib/lib/Bio/Tools/SeqPattern.pm -> blib/libdoc/Bio::Tools::SeqPattern.3pm Manifying blib/lib/Bio/Seq/RichSeq.pm -> blib/libdoc/Bio::Seq::RichSeq.3pm Manifying blib/lib/Bio/Search/HSP/HMMERHSP.pm -> blib/libdoc/Bio::Search::HSP::HMMERHSP.3pm Manifying blib/lib/Bio/SeqIO/ctf.pm -> blib/libdoc/Bio::SeqIO::ctf.3pm Manifying blib/lib/Bio/DB/Taxonomy/list.pm -> blib/libdoc/Bio::DB::Taxonomy::list.3pm Manifying blib/lib/Bio/Location/NarrowestCoordPolicy.pm -> blib/libdoc/Bio::Location::NarrowestCoordPolicy.3pm Manifying blib/lib/Bio/Tools/Sigcleave.pm -> blib/libdoc/Bio::Tools::Sigcleave.3pm Manifying blib/lib/Bio/DB/Taxonomy.pm -> blib/libdoc/Bio::DB::Taxonomy.3pm Manifying blib/lib/Bio/Assembly/Tools/ContigSpectrum.pm -> blib/libdoc/Bio::Assembly::Tools::ContigSpectrum.3pm Manifying blib/lib/Bio/Ontology/GOterm.pm -> blib/libdoc/Bio::Ontology::GOterm.3pm Manifying blib/lib/Bio/DB/Flat/BDB/embl.pm -> blib/libdoc/Bio::DB::Flat::BDB::embl.3pm Manifying blib/lib/Bio/Tools/MZEF.pm -> blib/libdoc/Bio::Tools::MZEF.3pm Manifying blib/lib/Bio/Phenotype/MeSH/Twig.pm -> blib/libdoc/Bio::Phenotype::MeSH::Twig.3pm Manifying blib/lib/Bio/Tools/Primer/Feature.pm -> blib/libdoc/Bio::Tools::Primer::Feature.3pm Manifying blib/lib/Bio/DB/GFF/Featname.pm -> blib/libdoc/Bio::DB::GFF::Featname.3pm Manifying blib/lib/Bio/LiveSeq/SeqI.pm -> blib/libdoc/Bio::LiveSeq::SeqI.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/oracleace.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::oracleace.3pm Manifying blib/lib/Bio/SeqFeature/FeaturePair.pm -> blib/libdoc/Bio::SeqFeature::FeaturePair.3pm Manifying blib/lib/Bio/LiveSeq/Repeat_Unit.pm -> blib/libdoc/Bio::LiveSeq::Repeat_Unit.3pm Manifying blib/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm -> blib/libdoc/Bio::SeqIO::Handler::GenericRichSeqHandler.3pm Manifying blib/lib/Bio/OntologyIO.pm -> blib/libdoc/Bio::OntologyIO.3pm Manifying blib/lib/Bio/Variation/SNP.pm -> blib/libdoc/Bio::Variation::SNP.3pm Manifying blib/lib/Bio/Tools/pICalculator.pm -> blib/libdoc/Bio::Tools::pICalculator.3pm Manifying blib/lib/Bio/DB/GenPept.pm -> blib/libdoc/Bio::DB::GenPept.3pm Manifying blib/lib/Bio/Matrix/PSM/SiteMatrix.pm -> blib/libdoc/Bio::Matrix::PSM::SiteMatrix.3pm Manifying blib/lib/Bio/DB/GFF.pm -> blib/libdoc/Bio::DB::GFF.3pm Manifying blib/lib/Bio/Ontology/RelationshipFactory.pm -> blib/libdoc/Bio::Ontology::RelationshipFactory.3pm Manifying blib/lib/Bio/Biblio/WebResource.pm -> blib/libdoc/Bio::Biblio::WebResource.3pm Manifying blib/lib/Bio/ParameterBaseI.pm -> blib/libdoc/Bio::ParameterBaseI.3pm Manifying blib/lib/Bio/Search/Hit/HitFactory.pm -> blib/libdoc/Bio::Search::Hit::HitFactory.3pm Manifying blib/lib/Bio/DB/SeqFeature/Segment.pm -> blib/libdoc/Bio::DB::SeqFeature::Segment.3pm Manifying blib/lib/Bio/Index/Fasta.pm -> blib/libdoc/Bio::Index::Fasta.3pm Manifying blib/lib/Bio/FeatureIO/bed.pm -> blib/libdoc/Bio::FeatureIO::bed.3pm Manifying blib/lib/Bio/ConfigData.pm -> blib/libdoc/Bio::ConfigData.3pm Manifying blib/lib/Bio/Ontology/InterProTerm.pm -> blib/libdoc/Bio::Ontology::InterProTerm.3pm Manifying blib/lib/Bio/PopGen/Simulation/GeneticDrift.pm -> blib/libdoc/Bio::PopGen::Simulation::GeneticDrift.3pm Manifying blib/lib/Bio/AlignIO/metafasta.pm -> blib/libdoc/Bio::AlignIO::metafasta.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::caching_handle.3pm Manifying blib/lib/Bio/Restriction/Enzyme.pm -> blib/libdoc/Bio::Restriction::Enzyme.3pm Manifying blib/lib/Bio/Tools/QRNA.pm -> blib/libdoc/Bio::Tools::QRNA.3pm Manifying blib/lib/Bio/Tools/Phylo/PAML/Result.pm -> blib/libdoc/Bio::Tools::Phylo::PAML::Result.3pm Manifying blib/lib/Bio/Location/AvWithinCoordPolicy.pm -> blib/libdoc/Bio::Location::AvWithinCoordPolicy.3pm Manifying blib/lib/Bio/Symbol/AlphabetI.pm -> blib/libdoc/Bio::Symbol::AlphabetI.3pm Manifying blib/lib/Bio/Tools/Genscan.pm -> blib/libdoc/Bio::Tools::Genscan.3pm Manifying blib/lib/Bio/Annotation/Relation.pm -> blib/libdoc/Bio::Annotation::Relation.3pm Manifying blib/lib/Bio/Tree/Draw/Cladogram.pm -> blib/libdoc/Bio::Tree::Draw::Cladogram.3pm Manifying blib/lib/Bio/Biblio/IO/pubmedxml.pm -> blib/libdoc/Bio::Biblio::IO::p ubmedxml.3pm Manifying blib/lib/Bio/DB/GFF/Homol.pm -> blib/libdoc/Bio::DB::GFF::Homol.3pm Manifying blib/lib/Bio/SearchIO/FastHitEventBuilder.pm -> blib/libdoc/Bio::SearchIO::FastHitEventBuilder.3pm Manifying blib/lib/Bio/SeqFeature/SiRNA/Pair.pm -> blib/libdoc/Bio::SeqFeature::SiRNA::Pair.3pm Manifying blib/lib/Bio/Factory/MapFactoryI.pm -> blib/libdoc/Bio::Factory::MapFactoryI.3pm Manifying blib/lib/Bio/SeqEvolution/EvolutionI.pm -> blib/libdoc/Bio::SeqEvolution::EvolutionI.3pm Manifying blib/lib/Bio/Tools/OddCodes.pm -> blib/libdoc/Bio::Tools::OddCodes.3pm Manifying blib/lib/Bio/SearchIO/psl.pm -> blib/libdoc/Bio::SearchIO::psl.3pm Manifying blib/lib/Bio/Map/TranscriptionFactor.pm -> blib/libdoc/Bio::Map::TranscriptionFactor.3pm Manifying blib/lib/Bio/RangeI.pm -> blib/libdoc/Bio::RangeI.3pm Manifying blib/lib/Bio/SeqAnalysisParserI.pm -> blib/libdoc/Bio::SeqAnalysisParserI.3pm Manifying blib/lib/Bio/Map/Clone.pm -> blib/libdoc/Bio::Map::Clone.3pm Manifying blib/lib/Bio/SeqIO/chaos.pm -> blib/libdoc/Bio::SeqIO::chaos.3pm Manifying blib/lib/Bio/Restriction/IO.pm -> blib/libdoc/Bio::Restriction::IO.3pm Manifying blib/lib/Bio/DB/TFBS.pm -> blib/libdoc/Bio::DB::TFBS.3pm Manifying blib/lib/Bio/Structure/IO/pdb.pm -> blib/libdoc/Bio::Structure::IO::pdb.3pm Manifying blib/lib/Bio/Align/Utilities.pm -> blib/libdoc/Bio::Align::Utilities.3pm Manifying blib/lib/Bio/LiveSeq/Transcript.pm -> blib/libdoc/Bio::LiveSeq::Transcript.3pm Manifying blib/lib/Bio/AlignIO/po.pm -> blib/libdoc/Bio::AlignIO::po.3pm Manifying blib/lib/Bio/Index/EMBL.pm -> blib/libdoc/Bio::Index::EMBL.3pm Manifying blib/lib/Bio/Expression/FeatureI.pm -> blib/libdoc/Bio::Expression::FeatureI.3pm Manifying blib/lib/Bio/Seq/QualI.pm -> blib/libdoc/Bio::Seq::QualI.3pm Manifying blib/lib/Bio/TreeIO/nhx.pm -> blib/libdoc/Bio::TreeIO::nhx.3pm Manifying blib/lib/Bio/Tools/Promoterwise.pm -> blib/libdoc/Bio::Tools::Promoterwise.3pm Manifying blib/lib/Bio/PopGen/IO.pm -> blib/libdoc/Bio::PopGen::IO.3pm Manifying blib/lib/Bio/Assembly/Scaffold.pm -> blib/libdoc/Bio::Assembly::Scaffold.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::memory::iterator.3pm Manifying blib/lib/Bio/SeqIO/locuslink.pm -> blib/libdoc/Bio::SeqIO::locuslink.3pm Manifying blib/lib/Bio/Tools/Est2Genome.pm -> blib/libdoc/Bio::Tools::Est2Genome.3pm Manifying blib/lib/Bio/Structure/Atom.pm -> blib/libdoc/Bio::Structure::Atom.3pm Manifying blib/lib/Bio/Search/GenericDatabase.pm -> blib/libdoc/Bio::Search::GenericDatabase.3pm Manifying blib/lib/Bio/Search/HSP/PullHSPI.pm -> blib/libdoc/Bio::Search::HSP::PullHSPI.3pm Manifying blib/lib/Bio/DB/GFF/Segment.pm -> blib/libdoc/Bio::DB::GFF::Segment.3pm Manifying blib/lib/Bio/Root/RootI.pm -> blib/libdoc/Bio::Root::RootI.3pm Manifying blib/lib/Bio/Tools/EUtilities/HistoryI.pm -> blib/libdoc/Bio::Tools::EUtilities::HistoryI.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::iterator.3pm Manifying blib/lib/Bio/Assembly/ContigAnalysis.pm -> blib/libdoc/Bio::Assembly::ContigAnalysis.3pm Manifying blib/lib/Bio/SeqIO/genbank.pm -> blib/libdoc/Bio::SeqIO::genbank.3pm Manifying blib/lib/Bio/OntologyIO/Handlers/BaseSAXHandler.pm -> blib/libdoc/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm Manifying blib/lib/Bio/Search/Hit/HmmpfamHit.pm -> blib/libdoc/Bio::Search::Hit::HmmpfamHit.3pm Manifying blib/lib/Bio/Tools/HMMER/Set.pm -> blib/libdoc/Bio::Tools::HMMER::Set.3pm Manifying blib/lib/Bio/CodonUsage/IO.pm -> blib/libdoc/Bio::CodonUsage::IO.3pm Manifying blib/lib/Bio/Variation/IO/xml.pm -> blib/libdoc/Bio::Variation::IO::xml.3pm Manifying blib/lib/Bio/Matrix/PSM/PsmI.pm -> blib/libdoc/Bio::Matrix::PSM::PsmI.3pm Manifying blib/lib/Bio/Biblio/Service.pm -> blib/libdoc/Bio::Biblio::Service.3pm Manifying blib/lib/Bio/Seq/RichSeqI.pm -> blib/libdoc/Bio::Seq::RichSeqI.3pm Manifying blib/lib/Bio/Biblio/PubmedBookArticle.pm -> blib/libdoc/Bio::Biblio::PubmedBookArticle.3pm Manifying blib/lib/Bio/TreeIO/phyloxml.pm -> blib/libdoc/Bio::TreeIO::phyloxml.3pm Manifying blib/lib/Bio/Sear ch/Hit/Fasta.pm -> blib/libdoc/Bio::Search::Hit::Fasta.3pm Manifying blib/lib/Bio/Tools/EUtilities/Summary/Item.pm -> blib/libdoc/Bio::Tools::EUtilities::Summary::Item.3pm Manifying blib/lib/Bio/Coordinate/MapperI.pm -> blib/libdoc/Bio::Coordinate::MapperI.3pm Manifying blib/lib/Bio/SearchIO/infernal.pm -> blib/libdoc/Bio::SearchIO::infernal.3pm Manifying blib/lib/Bio/Map/MapI.pm -> blib/libdoc/Bio::Map::MapI.3pm Manifying blib/lib/Bio/SeqIO/gcg.pm -> blib/libdoc/Bio::SeqIO::gcg.3pm Manifying blib/lib/Bio/SearchIO/Writer/HSPTableWriter.pm -> blib/libdoc/Bio::SearchIO::Writer::HSPTableWriter.3pm Manifying blib/lib/Bio/Seq/PrimaryQual.pm -> blib/libdoc/Bio::Seq::PrimaryQual.3pm Manifying blib/lib/Bio/Tools/Signalp.pm -> blib/libdoc/Bio::Tools::Signalp.3pm Manifying blib/lib/Bio/FeatureIO/vecscreen_simple.pm -> blib/libdoc/Bio::FeatureIO::vecscreen_simple.3pm Manifying blib/lib/Bio/Tools/EUtilities/Info/LinkInfo.pm -> blib/libdoc/Bio::Tools::EUtilities::Info::LinkInfo.3pm Manifying blib/lib/Bio/DB/Flat/BDB.pm -> blib/libdoc/Bio::DB::Flat::BDB.3pm Manifying blib/lib/Bio/Seq/Meta.pm -> blib/libdoc/Bio::Seq::Meta.3pm Manifying blib/lib/Bio/SeqFeature/Gene/Intron.pm -> blib/libdoc/Bio::SeqFeature::Gene::Intron.3pm Manifying blib/lib/Bio/Seq/SequenceTrace.pm -> blib/libdoc/Bio::Seq::SequenceTrace.3pm Manifying blib/lib/Bio/Annotation/Collection.pm -> blib/libdoc/Bio::Annotation::Collection.3pm Manifying blib/lib/Bio/SearchIO/Writer/HitTableWriter.pm -> blib/libdoc/Bio::SearchIO::Writer::HitTableWriter.3pm Manifying blib/lib/Bio/SearchIO/Writer/ResultTableWriter.pm -> blib/libdoc/Bio::SearchIO::Writer::ResultTableWriter.3pm Manifying blib/lib/Bio/Seq/PrimedSeq.pm -> blib/libdoc/Bio::Seq::PrimedSeq.3pm Manifying blib/lib/Bio/Tools/Phylo/Molphy.pm -> blib/libdoc/Bio::Tools::Phylo::Molphy.3pm Manifying blib/lib/Bio/AnnotationCollectionI.pm -> blib/libdoc/Bio::AnnotationCollectionI.3pm Manifying blib/lib/Bio/Location/SplitLocationI.pm -> blib/libdoc/Bio::Location::SplitLocationI.3pm Manifying blib/lib/Bio/Tree/RandomFactory.pm -> blib/libdoc/Bio::Tree::RandomFactory.3pm Manifying blib/lib/Bio/Biblio/Patent.pm -> blib/libdoc/Bio::Biblio::Patent.3pm Manifying blib/lib/Bio/Tree/TreeI.pm -> blib/libdoc/Bio::Tree::TreeI.3pm Manifying blib/lib/Bio/Biblio/BiblioBase.pm -> blib/libdoc/Bio::Biblio::BiblioBase.3pm Manifying blib/lib/Bio/Tools/Run/StandAloneBlast.pm -> blib/libdoc/Bio::Tools::Run::StandAloneBlast.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/transcript.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::transcript.3pm Manifying blib/lib/Bio/PullParserI.pm -> blib/libdoc/Bio::PullParserI.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/Scansite.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::Scansite.3pm Manifying blib/lib/Bio/Biblio/MedlineBookArticle.pm -> blib/libdoc/Bio::Biblio::MedlineBookArticle.3pm Manifying blib/lib/Bio/DB/Taxonomy/flatfile.pm -> blib/libdoc/Bio::DB::Taxonomy::flatfile.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::mysql.3pm Manifying blib/lib/Bio/SeqFeature/SimilarityPair.pm -> blib/libdoc/Bio::SeqFeature::SimilarityPair.3pm Manifying blib/lib/Bio/Index/BlastTable.pm -> blib/libdoc/Bio::Index::BlastTable.3pm Manifying blib/lib/Bio/Search/HSP/BlastPullHSP.pm -> blib/libdoc/Bio::Search::HSP::BlastPullHSP.3pm Manifying blib/lib/Bio/SeqIO/pln.pm -> blib/libdoc/Bio::SeqIO::pln.3pm Manifying blib/lib/Bio/Expression/Contact.pm -> blib/libdoc/Bio::Expression::Contact.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_ensgene.3pm Manifying blib/lib/Bio/Event/EventHandlerI.pm -> blib/libdoc/Bio::Event::EventHandlerI.3pm Manifying blib/lib/Bio/LocationI.pm -> blib/libdoc/Bio::LocationI.3pm Manifying blib/lib/Bio/Variation/AAChange.pm -> blib/libdoc/Bio::Variation::AAChange.3pm Manifying blib/lib/Bio/SeqFeature/CollectionI.pm -> blib/libdoc/Bio::SeqFeature::CollectionI.3pm Manifying blib/lib/Bio/Taxonomy/Tree.pm -> blib/libdoc/Bio::Taxonomy::Tree.3pm Manifying blib/lib/Bio/Annotation/Tree.pm -> blib/libdoc/Bio::Annot ation::Tree.3pm Manifying blib/lib/Bio/SeqIO/qual.pm -> blib/libdoc/Bio::SeqIO::qual.3pm Manifying blib/lib/Bio/Tools/AlignFactory.pm -> blib/libdoc/Bio::Tools::AlignFactory.3pm Manifying blib/lib/Bio/Matrix/PSM/IO/psiblast.pm -> blib/libdoc/Bio::Matrix::PSM::IO::psiblast.3pm Manifying blib/lib/Bio/DB/EUtilities.pm -> blib/libdoc/Bio::DB::EUtilities.3pm Manifying blib/lib/Bio/SearchIO.pm -> blib/libdoc/Bio::SearchIO.3pm Manifying blib/lib/Bio/Restriction/IO/base.pm -> blib/libdoc/Bio::Restriction::IO::base.3pm Manifying blib/lib/Bio/DB/FileCache.pm -> blib/libdoc/Bio::DB::FileCache.3pm Manifying blib/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm -> blib/libdoc/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3pm Manifying blib/lib/Bio/Seq/EncodedSeq.pm -> blib/libdoc/Bio::Seq::EncodedSeq.3pm Manifying blib/lib/Bio/Tree/Statistics.pm -> blib/libdoc/Bio::Tree::Statistics.3pm Manifying blib/lib/Bio/Tools/Match.pm -> blib/libdoc/Bio::Tools::Match.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm Manifying blib/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm -> blib/libdoc/Bio::SearchIO::Writer::HTMLResultWriter.3pm Manifying blib/lib/Bio/Tools/Primer/AssessorI.pm -> blib/libdoc/Bio::Tools::Primer::AssessorI.3pm Manifying blib/lib/Bio/Root/Build.pm -> blib/libdoc/Bio::Root::Build.3pm Manifying blib/lib/Bio/Map/PositionWithSequence.pm -> blib/libdoc/Bio::Map::PositionWithSequence.3pm Manifying blib/lib/Bio/Matrix/IO/phylip.pm -> blib/libdoc/Bio::Matrix::IO::phylip.3pm Manifying blib/lib/Bio/DB/SeqI.pm -> blib/libdoc/Bio::DB::SeqI.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm Manifying blib/lib/Bio/SeqFeature/Tools/FeatureNamer.pm -> blib/libdoc/Bio::SeqFeature::Tools::FeatureNamer.3pm Manifying blib/lib/Bio/Coordinate/Pair.pm -> blib/libdoc/Bio::Coordinate::Pair.3pm Manifying blib/lib/Bio/SeqFeature/Annotated.pm -> blib/libdoc/Bio::SeqFeature::Annotated.3pm Manifying blib/lib/Bio/DB/Query/HIVQuery.pm -> blib/libdoc/Bio::DB::Query::HIVQuery.3pm Manifying blib/lib/Bio/Structure/SecStr/DSSP/Res.pm -> blib/libdoc/Bio::Structure::SecStr::DSSP::Res.3pm Manifying blib/lib/Bio/Tools/Phylo/PAML/ModelResult.pm -> blib/libdoc/Bio::Tools::Phylo::PAML::ModelResult.3pm Manifying blib/lib/Bio/PopGen/PopulationI.pm -> blib/libdoc/Bio::PopGen::PopulationI.3pm Manifying blib/lib/Bio/LiveSeq/Translation.pm -> blib/libdoc/Bio::LiveSeq::Translation.3pm Manifying blib/lib/Bio/SeqIO/embldriver.pm -> blib/libdoc/Bio::SeqIO::embldriver.3pm Manifying blib/lib/Bio/SearchIO/SearchResultEventBuilder.pm -> blib/libdoc/Bio::SearchIO::SearchResultEventBuilder.3pm Manifying blib/lib/Bio/Factory/ObjectFactory.pm -> blib/libdoc/Bio::Factory::ObjectFactory.3pm Manifying blib/lib/Bio/DB/SwissProt.pm -> blib/libdoc/Bio::DB::SwissProt.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/gene.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::gene.3pm Manifying blib/lib/Bio/Phenotype/Correlate.pm -> blib/libdoc/Bio::Phenotype::Correlate.3pm Manifying blib/lib/Bio/Tools/Run/ParametersI.pm -> blib/libdoc/Bio::Tools::Run::ParametersI.3pm Manifying blib/lib/Bio/SeqIO/largefasta.pm -> blib/libdoc/Bio::SeqIO::largefasta.3pm Manifying blib/lib/Bio/AlignIO.pm -> blib/libdoc/Bio::AlignIO.3pm Manifying blib/lib/Bio/SeqIO/chaosxml.pm -> blib/libdoc/Bio::SeqIO::chaosxml.3pm Manifying blib/lib/Bio/Taxonomy/Node.pm -> blib/libdoc/Bio::Taxonomy::Node.3pm Manifying blib/lib/Bio/Search/Result/ResultI.pm -> blib/libdoc/Bio::Search::Result::ResultI.3pm Manifying blib/lib/Bio/SearchIO/axt.pm -> blib/libdoc/Bio::SearchIO::axt.3pm Manifying blib/lib/Bio/DB/UpdateableSeqI.pm -> blib/libdoc/Bio::DB::UpdateableSeqI.3pm Manifying blib/lib/Bio/SeqFeature/Tools/IDHandler.pm -> blib/libdoc/Bio::SeqFeature::Tools::IDHandler.3pm Manifying blib/lib/Bio/Expression/FeatureGroup/FeatureGroupMas50.pm -> blib/libdoc/Bio::Expression::FeatureGroup::FeatureGroupMas50.3pm Manifying blib/lib/Bio/DB/Flat/BDB/genbank.pm -> blib/libdoc/Bio::DB::Flat::BDB::genbank.3pm Manifying blib/lib/ Bio/SearchIO/blast_pull.pm -> blib/libdoc/Bio::SearchIO::blast_pull.3pm Manifying blib/lib/Bio/DB/Flat/BinarySearch.pm -> blib/libdoc/Bio::DB::Flat::BinarySearch.3pm Manifying blib/lib/Bio/Map/PositionHandlerI.pm -> blib/libdoc/Bio::Map::PositionHandlerI.3pm Manifying blib/lib/Bio/Tools/EUtilities/Link/UrlLink.pm -> blib/libdoc/Bio::Tools::EUtilities::Link::UrlLink.3pm Manifying blib/lib/Bio/SearchIO/megablast.pm -> blib/libdoc/Bio::SearchIO::megablast.3pm Manifying blib/lib/Bio/Annotation/DBLink.pm -> blib/libdoc/Bio::Annotation::DBLink.3pm Manifying blib/lib/Bio/Tree/Node.pm -> blib/libdoc/Bio::Tree::Node.3pm Manifying blib/lib/Bio/LiveSeq/Exon.pm -> blib/libdoc/Bio::LiveSeq::Exon.3pm Manifying blib/lib/Bio/Tools/EUtilities.pm -> blib/libdoc/Bio::Tools::EUtilities.3pm Manifying blib/lib/Bio/SeqIO/exp.pm -> blib/libdoc/Bio::SeqIO::exp.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/match.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::match.3pm Manifying blib/lib/Bio/SeqIO/bsml.pm -> blib/libdoc/Bio::SeqIO::bsml.3pm Manifying blib/lib/Bio/AlignIO/prodom.pm -> blib/libdoc/Bio::AlignIO::prodom.3pm Manifying blib/lib/Bio/Tools/ESTScan.pm -> blib/libdoc/Bio::Tools::ESTScan.3pm Manifying blib/lib/Bio/Cluster/UniGeneI.pm -> blib/libdoc/Bio::Cluster::UniGeneI.3pm Manifying blib/lib/Bio/Tools/Signalp/ExtendedSignalp.pm -> blib/libdoc/Bio::Tools::Signalp::ExtendedSignalp.3pm Manifying blib/lib/Bio/Biblio/Journal.pm -> blib/libdoc/Bio::Biblio::Journal.3pm Manifying blib/lib/Bio/Matrix/Scoring.pm -> blib/libdoc/Bio::Matrix::Scoring.3pm Manifying blib/lib/Bio/Structure/Chain.pm -> blib/libdoc/Bio::Structure::Chain.3pm Manifying blib/lib/Bio/Phenotype/Measure.pm -> blib/libdoc/Bio::Phenotype::Measure.3pm Manifying blib/lib/Bio/UpdateableSeqI.pm -> blib/libdoc/Bio::UpdateableSeqI.3pm Manifying blib/lib/Bio/DB/HIV/HIVQueryHelper.pm -> blib/libdoc/Bio::DB::HIV::HIVQueryHelper.3pm Manifying blib/lib/Bio/SearchDist.pm -> blib/libdoc/Bio::SearchDist.3pm Manifying blib/lib/Bio/Coordinate/Graph.pm -> blib/libdoc/Bio::Coordinate::Graph.3pm Manifying blib/lib/Bio/IdCollectionI.pm -> blib/libdoc/Bio::IdCollectionI.3pm Manifying blib/lib/Bio/Search/Hit/HitI.pm -> blib/libdoc/Bio::Search::Hit::HitI.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi.3pm Manifying blib/lib/Bio/Search/Result/BlastResult.pm -> blib/libdoc/Bio::Search::Result::BlastResult.3pm Manifying blib/lib/Bio/Seq/LargeSeq.pm -> blib/libdoc/Bio::Seq::LargeSeq.3pm Manifying blib/lib/Bio/Expression/FeatureSet/FeatureSetMas50.pm -> blib/libdoc/Bio::Expression::FeatureSet::FeatureSetMas50.3pm Manifying blib/lib/Bio/SeqIO/game/seqHandler.pm -> blib/libdoc/Bio::SeqIO::game::seqHandler.3pm Manifying blib/lib/Bio/Align/ProteinStatistics.pm -> blib/libdoc/Bio::Align::ProteinStatistics.3pm Manifying blib/lib/Bio/DB/GFF/Feature.pm -> blib/libdoc/Bio::DB::GFF::Feature.3pm Manifying blib/lib/Bio/Annotation/Comment.pm -> blib/libdoc/Bio::Annotation::Comment.3pm Manifying blib/lib/Bio/Coordinate/Result.pm -> blib/libdoc/Bio::Coordinate::Result.3pm Manifying blib/lib/Bio/SeqFeature/Gene/Poly_A_site.pm -> blib/libdoc/Bio::SeqFeature::Gene::Poly_A_site.3pm Manifying blib/lib/Bio/Root/IO.pm -> blib/libdoc/Bio::Root::IO.3pm Manifying blib/lib/Bio/Search/Hit/HMMERHit.pm -> blib/libdoc/Bio::Search::Hit::HMMERHit.3pm Manifying blib/lib/Bio/DB/Fasta.pm -> blib/libdoc/Bio::DB::Fasta.3pm Manifying blib/lib/Bio/DB/Biblio/biofetch.pm -> blib/libdoc/Bio::DB::Biblio::biofetch.3pm Manifying blib/lib/Bio/Seq/Quality.pm -> blib/libdoc/Bio::Seq::Quality.3pm Manifying blib/lib/Bio/SeqIO/strider.pm -> blib/libdoc/Bio::SeqIO::strider.3pm Manifying blib/lib/Bio/Tools/HMM.pm -> blib/libdoc/Bio::Tools::HMM.3pm Manifying blib/lib/Bio/Matrix/Mlagan.pm -> blib/libdoc/Bio::Matrix::Mlagan.3pm Manifying blib/lib/Bio/SearchIO/sim4.pm -> blib/libdoc/Bio::SearchIO::sim4.3pm Manifying blib/lib/Bio/Assembly/IO.pm -> blib/libdoc/Bio::Assembly::IO.3pm Manifying blib/lib/Bio/SeqFeature/Gene/UTR.pm -> blib/libdoc/Bio::SeqFeature::Gene::UTR.3pm Manifying blib/lib/Bio/Index/Swissprot.pm -> blib/libdoc/ Bio::Index::Swissprot.3pm Manifying blib/lib/Bio/Tools/SeqStats.pm -> blib/libdoc/Bio::Tools::SeqStats.3pm Manifying blib/lib/Bio/Structure/StructureI.pm -> blib/libdoc/Bio::Structure::StructureI.3pm Manifying blib/lib/Bio/AlignIO/mega.pm -> blib/libdoc/Bio::AlignIO::mega.3pm Manifying blib/lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm -> blib/libdoc/Bio::SeqIO::tinyseq::tinyseqHandler.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::so_transcript.3pm Manifying blib/lib/Bio/Tools/dpAlign.pm -> blib/libdoc/Bio::Tools::dpAlign.3pm Manifying blib/lib/Bio/Variation/DNAMutation.pm -> blib/libdoc/Bio::Variation::DNAMutation.3pm Manifying blib/lib/Bio/Search/Result/HMMERResult.pm -> blib/libdoc/Bio::Search::Result::HMMERResult.3pm Manifying blib/lib/Bio/SeqIO/fastq.pm -> blib/libdoc/Bio::SeqIO::fastq.3pm Manifying blib/lib/Bio/SearchIO/wise.pm -> blib/libdoc/Bio::SearchIO::wise.3pm Manifying blib/lib/Bio/Ontology/RelationshipType.pm -> blib/libdoc/Bio::Ontology::RelationshipType.3pm Manifying blib/lib/Bio/Biblio/Article.pm -> blib/libdoc/Bio::Biblio::Article.3pm Manifying blib/lib/Bio/Symbol/Alphabet.pm -> blib/libdoc/Bio::Symbol::Alphabet.3pm Manifying blib/lib/Bio/Coordinate/ExtrapolatingPair.pm -> blib/libdoc/Bio::Coordinate::ExtrapolatingPair.3pm Manifying blib/lib/Bio/Search/Result/PullResultI.pm -> blib/libdoc/Bio::Search::Result::PullResultI.3pm Manifying blib/lib/Bio/SeqIO/tab.pm -> blib/libdoc/Bio::SeqIO::tab.3pm Manifying blib/lib/Bio/Coordinate/Collection.pm -> blib/libdoc/Bio::Coordinate::Collection.3pm Manifying blib/lib/Bio/LiveSeq/Gene.pm -> blib/libdoc/Bio::LiveSeq::Gene.3pm Manifying blib/lib/Bio/Annotation/AnnotationFactory.pm -> blib/libdoc/Bio::Annotation::AnnotationFactory.3pm Manifying blib/lib/Bio/Search/Hit/BlastPullHit.pm -> blib/libdoc/Bio::Search::Hit::BlastPullHit.3pm Manifying blib/lib/Bio/OntologyIO/goflat.pm -> blib/libdoc/Bio::OntologyIO::goflat.3pm Manifying blib/lib/Bio/Location/Simple.pm -> blib/libdoc/Bio::Location::Simple.3pm Manifying blib/lib/Bio/Tools/Phylo/Phylip/ProtDist.pm -> blib/libdoc/Bio::Tools::Phylo::Phylip::ProtDist.3pm Manifying blib/lib/Bio/SeqFeature/Collection.pm -> blib/libdoc/Bio::SeqFeature::Collection.3pm Manifying blib/lib/Bio/Biblio.pm -> blib/libdoc/Bio::Biblio.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3pm Manifying blib/lib/Bio/DB/GFF/Aggregator/clone.pm -> blib/libdoc/Bio::DB::GFF::Aggregator::clone.3pm Manifying blib/lib/Bio/SeqFeature/Gene/Transcript.pm -> blib/libdoc/Bio::SeqFeature::Gene::Transcript.3pm Manifying blib/lib/Bio/SeqFeatureI.pm -> blib/libdoc/Bio::SeqFeatureI.3pm Manifying blib/lib/Bio/PopGen/IndividualI.pm -> blib/libdoc/Bio::PopGen::IndividualI.3pm Manifying blib/lib/Bio/Tools/Lucy.pm -> blib/libdoc/Bio::Tools::Lucy.3pm Manifying blib/lib/Bio/Tools/Run/WrapperBase.pm -> blib/libdoc/Bio::Tools::Run::WrapperBase.3pm Manifying blib/lib/Bio/SeqFeature/Tools/TypeMapper.pm -> blib/libdoc/Bio::SeqFeature::Tools::TypeMapper.3pm Manifying blib/lib/Bio/Biblio/MedlineJournal.pm -> blib/libdoc/Bio::Biblio::MedlineJournal.3pm Manifying blib/lib/Bio/SeqIO/kegg.pm -> blib/libdoc/Bio::SeqIO::kegg.3pm Manifying blib/lib/Bio/Matrix/PSM/ProtMatrix.pm -> blib/libdoc/Bio::Matrix::PSM::ProtMatrix.3pm Manifying blib/lib/Bio/AlignIO/fasta.pm -> blib/libdoc/Bio::AlignIO::fasta.3pm Manifying blib/lib/Bio/Matrix/PSM/PsmHeader.pm -> blib/libdoc/Bio::Matrix::PSM::PsmHeader.3pm Manifying blib/lib/Bio/SeqFeature/Tools/Unflattener.pm -> blib/libdoc/Bio::SeqFeature::Tools::Unflattener.3pm Manifying blib/lib/Bio/Location/WidestCoordPolicy.pm -> blib/libdoc/Bio::Location::WidestCoordPolicy.3pm Manifying blib/lib/Bio/Search/Result/GenericResult.pm -> blib/libdoc/Bio::Search::Result::GenericResult.3pm Manifying blib/lib/Bio/Map/PositionHandler.pm -> blib/libdoc/Bio::Map::PositionHandler.3pm Manifying blib/lib/Bio/Tools/GFF.pm -> blib/libdoc/Bio::Tools::GFF.3pm Manifying blib/lib/Bio/Ontology/Ontology.pm -> blib/libdoc/Bio::Ontology::Ontology.3pm Manif ying blib/lib/Bio/Biblio/PubmedArticle.pm -> blib/libdoc/Bio::Biblio::PubmedArticle.3pm Manifying blib/lib/Bio/SearchIO/Writer/TextResultWriter.pm -> blib/libdoc/Bio::SearchIO::Writer::TextResultWriter.3pm Manifying blib/lib/Bio/Seq/LargeSeqI.pm -> blib/libdoc/Bio::Seq::LargeSeqI.3pm Manifying blib/lib/Bio/AlignIO/nexus.pm -> blib/libdoc/Bio::AlignIO::nexus.3pm Manifying blib/lib/Bio/SearchIO/EventHandlerI.pm -> blib/libdoc/Bio::SearchIO::EventHandlerI.3pm Manifying blib/lib/Bio/Tools/Seg.pm -> blib/libdoc/Bio::Tools::Seg.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlace.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::mysqlace.3pm Manifying blib/lib/Bio/DB/BioFetch.pm -> blib/libdoc/Bio::DB::BioFetch.3pm Manifying blib/lib/Bio/Assembly/IO/phrap.pm -> blib/libdoc/Bio::Assembly::IO::phrap.3pm Manifying blib/lib/Bio/Taxon.pm -> blib/libdoc/Bio::Taxon.3pm Manifying blib/lib/Bio/Tools/RNAMotif.pm -> blib/libdoc/Bio::Tools::RNAMotif.3pm Manifying blib/lib/Bio/Ontology/RelationshipI.pm -> blib/libdoc/Bio::Ontology::RelationshipI.3pm Manifying blib/lib/Bio/Factory/AnalysisI.pm -> blib/libdoc/Bio::Factory::AnalysisI.3pm Manifying blib/lib/Bio/PopGen/Genotype.pm -> blib/libdoc/Bio::PopGen::Genotype.3pm Manifying blib/lib/Bio/Map/OrderedPositionWithDistance.pm -> blib/libdoc/Bio::Map::OrderedPositionWithDistance.3pm Manifying blib/lib/Bio/Coordinate/Utils.pm -> blib/libdoc/Bio::Coordinate::Utils.3pm Manifying blib/lib/Bio/Tools/EUtilities/History.pm -> blib/libdoc/Bio::Tools::EUtilities::History.3pm Manifying blib/lib/Bio/PopGen/Statistics.pm -> blib/libdoc/Bio::PopGen::Statistics.3pm Manifying blib/lib/Bio/DB/EntrezGene.pm -> blib/libdoc/Bio::DB::EntrezGene.3pm Manifying blib/lib/Bio/AnnotationI.pm -> blib/libdoc/Bio::AnnotationI.3pm Manifying blib/lib/Bio/Ontology/Relationship.pm -> blib/libdoc/Bio::Ontology::Relationship.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/HNN.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::HNN.3pm Manifying blib/lib/Bio/Seq/SeqBuilder.pm -> blib/libdoc/Bio::Seq::SeqBuilder.3pm Manifying blib/lib/Bio/Tools/SeqWords.pm -> blib/libdoc/Bio::Tools::SeqWords.3pm Manifying blib/lib/Bio/SeqIO/raw.pm -> blib/libdoc/Bio::SeqIO::raw.3pm Manifying blib/lib/Bio/SeqFeature/TypedSeqFeatureI.pm -> blib/libdoc/Bio::SeqFeature::TypedSeqFeatureI.3pm Manifying blib/lib/Bio/Search/Iteration/IterationI.pm -> blib/libdoc/Bio::Search::Iteration::IterationI.3pm Manifying blib/lib/Bio/Search/Result/ResultFactory.pm -> blib/libdoc/Bio::Search::Result::ResultFactory.3pm Manifying blib/lib/Bio/LiveSeq/Chain.pm -> blib/libdoc/Bio::LiveSeq::Chain.3pm Manifying blib/lib/Bio/PopGen/HtSNP.pm -> blib/libdoc/Bio::PopGen::HtSNP.3pm Manifying blib/lib/Bio/LiveSeq/Mutation.pm -> blib/libdoc/Bio::LiveSeq::Mutation.3pm Manifying blib/lib/Bio/Map/SimpleMap.pm -> blib/libdoc/Bio::Map::SimpleMap.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::GFF2Loader.3pm Manifying blib/lib/Bio/Search/Hit/ModelHit.pm -> blib/libdoc/Bio::Search::Hit::ModelHit.3pm Manifying blib/lib/Bio/Tools/HMMER/Domain.pm -> blib/libdoc/Bio::Tools::HMMER::Domain.3pm Manifying blib/lib/Bio/Matrix/PSM/InstanceSiteI.pm -> blib/libdoc/Bio::Matrix::PSM::InstanceSiteI.3pm Manifying blib/lib/Bio/Structure/SecStr/STRIDE/Res.pm -> blib/libdoc/Bio::Structure::SecStr::STRIDE::Res.3pm Manifying blib/lib/Bio/Map/Physical.pm -> blib/libdoc/Bio::Map::Physical.3pm Manifying blib/lib/Bio/DB/InMemoryCache.pm -> blib/libdoc/Bio::DB::InMemoryCache.3pm Manifying blib/lib/Bio/Perl.pm -> blib/libdoc/Bio::Perl.3pm Manifying blib/lib/Bio/SeqIO/game/gameWriter.pm -> blib/libdoc/Bio::SeqIO::game::gameWriter.3pm Manifying blib/lib/Bio/SeqIO/abi.pm -> blib/libdoc/Bio::SeqIO::abi.3pm Manifying blib/lib/Bio/LiveSeq/AARange.pm -> blib/libdoc/Bio::LiveSeq::AARange.3pm Manifying blib/lib/Bio/PrimarySeq.pm -> blib/libdoc/Bio::PrimarySeq.3pm Manifying blib/lib/Bio/DB/Flat/BDB/fasta.pm -> blib/libdoc/Bio::DB::Flat::BDB::fasta.3pm Manifying blib/lib/Bio/Tools/Run/GenericParameters.pm -> blib/libdoc/Bio::Tools::Run::GenericParameters.3pm Manifying bl ib/lib/Bio/SeqIO/lasergene.pm -> blib/libdoc/Bio::SeqIO::lasergene.3pm Manifying blib/lib/Bio/PopGen/IO/prettybase.pm -> blib/libdoc/Bio::PopGen::IO::prettybase.3pm Manifying blib/lib/Bio/Assembly/IO/ace.pm -> blib/libdoc/Bio::Assembly::IO::ace.3pm Manifying blib/lib/Bio/Symbol/SymbolI.pm -> blib/libdoc/Bio::Symbol::SymbolI.3pm Manifying blib/lib/Bio/SimpleAnalysisI.pm -> blib/libdoc/Bio::SimpleAnalysisI.3pm Manifying blib/lib/Bio/Matrix/PSM/IO/transfac.pm -> blib/libdoc/Bio::Matrix::PSM::IO::transfac.3pm Manifying blib/lib/Bio/LiveSeq/IO/BioPerl.pm -> blib/libdoc/Bio::LiveSeq::IO::BioPerl.3pm Manifying blib/lib/Bio/Annotation/OntologyTerm.pm -> blib/libdoc/Bio::Annotation::OntologyTerm.3pm Manifying blib/lib/Bio/Tools/Run/RemoteBlast.pm -> blib/libdoc/Bio::Tools::Run::RemoteBlast.3pm Manifying blib/lib/Bio/Phenotype/MeSH/Term.pm -> blib/libdoc/Bio::Phenotype::MeSH::Term.3pm Manifying blib/lib/Bio/Tools/Pseudowise.pm -> blib/libdoc/Bio::Tools::Pseudowise.3pm Manifying blib/lib/Bio/DB/HIV.pm -> blib/libdoc/Bio::DB::HIV.3pm Manifying blib/lib/Bio/SeqFeature/AnnotationAdaptor.pm -> blib/libdoc/Bio::SeqFeature::AnnotationAdaptor.3pm Manifying blib/lib/Bio/Matrix/IO.pm -> blib/libdoc/Bio::Matrix::IO.3pm Manifying blib/lib/Bio/Map/Gene.pm -> blib/libdoc/Bio::Map::Gene.3pm Manifying blib/lib/Bio/Map/Prediction.pm -> blib/libdoc/Bio::Map::Prediction.3pm Manifying blib/lib/Bio/Biblio/Person.pm -> blib/libdoc/Bio::Biblio::Person.3pm Manifying blib/lib/Bio/Search/BlastStatistics.pm -> blib/libdoc/Bio::Search::BlastStatistics.3pm Manifying blib/lib/Bio/PopGen/MarkerI.pm -> blib/libdoc/Bio::PopGen::MarkerI.3pm Manifying blib/lib/Bio/Tools/Grail.pm -> blib/libdoc/Bio::Tools::Grail.3pm Manifying blib/lib/Bio/Search/HSP/ModelHSP.pm -> blib/libdoc/Bio::Search::HSP::ModelHSP.3pm Manifying blib/lib/Bio/DB/WebDBSeqI.pm -> blib/libdoc/Bio::DB::WebDBSeqI.3pm Manifying blib/lib/Bio/AlignIO/clustalw.pm -> blib/libdoc/Bio::AlignIO::clustalw.3pm Manifying blib/lib/Bio/TreeIO/newick.pm -> blib/libdoc/Bio::TreeIO::newick.3pm Manifying blib/lib/Bio/Tools/EUtilities/Link/LinkSet.pm -> blib/libdoc/Bio::Tools::EUtilities::Link::LinkSet.3pm Manifying blib/lib/Bio/PopGen/Utilities.pm -> blib/libdoc/Bio::PopGen::Utilities.3pm Manifying blib/lib/Bio/Tools/Analysis/DNA/ESEfinder.pm -> blib/libdoc/Bio::Tools::Analysis::DNA::ESEfinder.3pm Manifying blib/lib/Bio/Search/HSP/FastaHSP.pm -> blib/libdoc/Bio::Search::HSP::FastaHSP.3pm Manifying blib/lib/Bio/Phenotype/OMIM/MiniMIMentry.pm -> blib/libdoc/Bio::Phenotype::OMIM::MiniMIMentry.3pm Manifying blib/lib/Bio/Tools/Analysis/Protein/ELM.pm -> blib/libdoc/Bio::Tools::Analysis::Protein::ELM.3pm Manifying blib/lib/Bio/Tools/Analysis/SimpleAnalysisBase.pm -> blib/libdoc/Bio::Tools::Analysis::SimpleAnalysisBase.3pm Manifying blib/lib/Bio/FeatureIO/gtf.pm -> blib/libdoc/Bio::FeatureIO::gtf.3pm Manifying blib/lib/Bio/AnnotatableI.pm -> blib/libdoc/Bio::AnnotatableI.3pm Manifying blib/lib/Bio/DB/RefSeq.pm -> blib/libdoc/Bio::DB::RefSeq.3pm Manifying blib/lib/Bio/Seq/Meta/Array.pm -> blib/libdoc/Bio::Seq::Meta::Array.3pm Manifying blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm -> blib/libdoc/Bio::DB::SeqFeature::Store::GFF3Loader.3pm Manifying blib/lib/Bio/Structure/IO.pm -> blib/libdoc/Bio::Structure::IO.3pm Manifying blib/lib/Bio/Variation/SeqDiff.pm -> blib/libdoc/Bio::Variation::SeqDiff.3pm Manifying blib/lib/Bio/Seq/SeqWithQuality.pm -> blib/libdoc/Bio::Seq::SeqWithQuality.3pm Manifying blib/lib/Bio/PopGen/TagHaplotype.pm -> blib/libdoc/Bio::PopGen::TagHaplotype.3pm Manifying blib/lib/Bio/Matrix/IO/mlagan.pm -> blib/libdoc/Bio::Matrix::IO::mlagan.3pm Manifying blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm -> blib/libdoc/Bio::DB::GFF::Adaptor::dbi::oracle.3pm Manifying blib/lib/Bio/DB/Qual.pm -> blib/libdoc/Bio::DB::Qual.3pm + cd blib/libdoc + for i in Bio::Tools::GuessSeqFormat.3pm Bio::Tools::Geneid.3pm + iconv --from=ISO-8859-1 --to=UTF-8 Bio::Tools::GuessSeqFormat.3pm + mv new Bio::Tools::GuessSeqFormat.3pm + for i in Bio::Tools::GuessSeqFormat.3pm Bio::Tools::Geneid.3pm + iconv --from=ISO-8859-1 --to=UTF-8 Bio::Tools::Geneid.3pm + mv new Bio::Tools::Geneid.3pm + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3qnkRn + umask 022 + cd /builddir/build/BUILD + cd BioPerl-1.6.0 + LANG=C + export LANG + unset DISPLAY + rm -rf /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch + perl Build pure_install --destdir=/builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch Copying scripts/utilities/bp_sreformat.PLS -> blib/script/bp_sreformat.PLS Deleting blib/script/bp_sreformat.PLS.bak blib/script/bp_sreformat.PLS -> blib/script/bp_sreformat.pl Copying scripts/seq/seqconvert.PLS -> blib/script/seqconvert.PLS Deleting blib/script/seqconvert.PLS.bak blib/script/seqconvert.PLS -> blib/script/bp_seqconvert.pl Copying scripts/searchio/parse_hmmsearch.PLS -> blib/script/parse_hmmsearch.PLS Deleting blib/script/parse_hmmsearch.PLS.bak blib/script/parse_hmmsearch.PLS -> blib/script/bp_parse_hmmsearch.pl Copying scripts/index/bp_seqret.PLS -> blib/script/bp_seqret.PLS Deleting blib/script/bp_seqret.PLS.bak blib/script/bp_seqret.PLS -> blib/script/bp_seqret.pl Copying scripts/tree/tree2pag.PLS -> blib/script/tree2pag.PLS Deleting blib/script/tree2pag.PLS.bak blib/script/tree2pag.PLS -> blib/script/bp_tree2pag.pl Copying scripts/Bio-DB-GFF/meta_gff.PLS -> blib/script/meta_gff.PLS Deleting blib/script/meta_gff.PLS.bak blib/script/meta_gff.PLS -> blib/script/bp_meta_gff.pl Copying scripts/tree/nexus2nh.PLS -> blib/script/nexus2nh.PLS Deleting blib/script/nexus2nh.PLS.bak blib/script/nexus2nh.PLS -> blib/script/bp_nexus2nh.pl Copying scripts/searchio/filter_search.PLS -> blib/script/filter_search.PLS Deleting blib/script/filter_search.PLS.bak blib/script/filter_search.PLS -> blib/script/bp_filter_search.pl Copying scripts/Bio-SeqFeature-Store/bp_seqfeature_gff3.PLS -> blib/script/bp_seqfeature_gff3.PLS blib/script/bp_seqfeature_gff3.PLS -> blib/script/bp_seqfeature_gff3.pl Copying scripts/Bio-DB-GFF/generate_histogram.PLS -> blib/script/generate_histogram.PLS Deleting blib/script/generate_histogram.PLS.bak blib/script/generate_histogram.PLS -> blib/script/bp_generate_histogram.pl Copying scripts/popgen/heterogeneity_test.PLS -> blib/script/heterogeneity_test.PLS Deleting blib/script/heterogeneity_test.PLS.bak blib/script/heterogeneity_test.PLS -> blib/script/bp_heterogeneity_test.pl Copying scripts/DB/flanks.PLS -> blib/script/flanks.PLS Deleting blib/script/flanks.PLS.bak blib/script/flanks.PLS -> blib/script/bp_flanks.pl Copying scripts/seq/split_seq.PLS -> blib/script/split_seq.PLS Deleting blib/script/split_seq.PLS.bak blib/script/split_seq.PLS -> blib/script/bp_split_seq.pl Copying scripts/Bio-DB-GFF/load_gff.PLS -> blib/script/load_gff.PLS Deleting blib/script/load_gff.PLS.bak blib/script/load_gff.PLS -> blib/script/bp_load_gff.pl Copying scripts/DB/biogetseq.PLS -> blib/script/biogetseq.PLS Deleting blib/script/biogetseq.PLS.bak blib/script/biogetseq.PLS -> blib/script/bp_biogetseq.pl Copying scripts/index/bp_fetch.PLS -> blib/script/bp_fetch.PLS Deleting blib/script/bp_fetch.PLS.bak blib/script/bp_fetch.PLS -> blib/script/bp_fetch.pl Copying scripts/utilities/mutate.PLS -> blib/script/mutate.PLS Deleting blib/script/mutate.PLS.bak blib/script/mutate.PLS -> blib/script/bp_mutate.pl Copying scripts/Bio-DB-GFF/process_sgd.PLS -> blib/script/process_sgd.PLS Deleting blib/script/process_sgd.PLS.bak blib/script/process_sgd.PLS -> blib/script/bp_process_sgd.pl Copying scripts/index/bp_index.PLS -> blib/script/bp_index.PLS Deleting blib/script/bp_index.PLS.bak blib/script/bp_index.PLS -> blib/script/bp_index.pl Copying scripts/utilities/dbsplit.PLS -> blib/script/dbsplit.PLS Deleting blib/script/dbsplit.PLS.bak blib/script/dbsplit.PLS -> blib/script/bp_dbsplit.pl Copying scripts/seqstats/oligo_count.PLS -> blib/script/oligo_count.PLS Deleting blib/script/oligo_count.PLS.bak blib/script/oligo_count.PLS -> blib/script/bp_oligo_count.pl Copying scripts/Bio-SeqFeature-Store/bp_seqfeature_load.PLS -> blib/script/bp_seqfeature_load.PLS Deleting blib/script/bp_seqfeature_load.PLS.bak blib/script/bp_seqfeature_load.PLS -> blib/script/bp_seqfeature_load.pl Copying scripts/Bio-DB-GFF/process_gadfly.PLS -> blib/script/process_gadfly.PLS Deleting blib/script/process_gadfly.PLS.bak blib/script/process_gadfly.PLS -> blib/script/bp_process_gadfly.pl Copying scripts/searchio/hmmer_to_table.PLS -> blib/script/hmmer_to_table.PLS Deleting blib/script/hmmer_to_table.PLS.bak blib/script/hmmer_to_table.PLS -> blib/script/b p_hmmer_to_table.pl Copying scripts/searchio/fastam9_to_table.PLS -> blib/script/fastam9_to_table.PLS Deleting blib/script/fastam9_to_table.PLS.bak blib/script/fastam9_to_table.PLS -> blib/script/bp_fastam9_to_table.pl Copying scripts/DB/biofetch_genbank_proxy.PLS -> blib/script/biofetch_genbank_proxy.PLS Deleting blib/script/biofetch_genbank_proxy.PLS.bak blib/script/biofetch_genbank_proxy.PLS -> blib/script/bp_biofetch_genbank_proxy.pl Copying scripts/utilities/seq_length.PLS -> blib/script/seq_length.PLS Deleting blib/script/seq_length.PLS.bak blib/script/seq_length.PLS -> blib/script/bp_seq_length.pl Copying scripts/seq/extract_feature_seq.PLS -> blib/script/extract_feature_seq.PLS Deleting blib/script/extract_feature_seq.PLS.bak blib/script/extract_feature_seq.PLS -> blib/script/bp_extract_feature_seq.pl Copying scripts/Bio-DB-GFF/genbank2gff.PLS -> blib/script/genbank2gff.PLS Deleting blib/script/genbank2gff.PLS.bak blib/script/genbank2gff.PLS -> blib/script/bp_genbank2gff.pl Copying scripts/taxa/taxid4species.PLS -> blib/script/taxid4species.PLS Deleting blib/script/taxid4species.PLS.bak blib/script/taxid4species.PLS -> blib/script/bp_taxid4species.pl Copying scripts/Bio-DB-GFF/bulk_load_gff.PLS -> blib/script/bulk_load_gff.PLS Deleting blib/script/bulk_load_gff.PLS.bak blib/script/bulk_load_gff.PLS -> blib/script/bp_bulk_load_gff.pl Copying scripts/utilities/search2gff.PLS -> blib/script/search2gff.PLS Deleting blib/script/search2gff.PLS.bak blib/script/search2gff.PLS -> blib/script/bp_search2gff.pl Copying scripts/tree/blast2tree.PLS -> blib/script/blast2tree.PLS Deleting blib/script/blast2tree.PLS.bak blib/script/blast2tree.PLS -> blib/script/bp_blast2tree.pl Copying scripts/seq/make_mrna_protein.PLS -> blib/script/make_mrna_protein.PLS Deleting blib/script/make_mrna_protein.PLS.bak blib/script/make_mrna_protein.PLS -> blib/script/bp_make_mrna_protein.pl Copying scripts/seq/unflatten_seq.PLS -> blib/script/unflatten_seq.PLS Deleting blib/script/unflatten_seq.PLS.bak blib/script/unflatten_seq.PLS -> blib/script/bp_unflatten_seq.pl Copying scripts/utilities/search2tribe.PLS -> blib/script/search2tribe.PLS Deleting blib/script/search2tribe.PLS.bak blib/script/search2tribe.PLS -> blib/script/bp_search2tribe.pl Copying scripts/DB/bioflat_index.PLS -> blib/script/bioflat_index.PLS Deleting blib/script/bioflat_index.PLS.bak blib/script/bioflat_index.PLS -> blib/script/bp_bioflat_index.pl Copying scripts/Bio-SeqFeature-Store/bp_seqfeature_delete.PLS -> blib/script/bp_seqfeature_delete.PLS Deleting blib/script/bp_seqfeature_delete.PLS.bak blib/script/bp_seqfeature_delete.PLS -> blib/script/bp_seqfeature_delete.pl Copying scripts/taxa/query_entrez_taxa.PLS -> blib/script/query_entrez_taxa.PLS Deleting blib/script/query_entrez_taxa.PLS.bak blib/script/query_entrez_taxa.PLS -> blib/script/bp_query_entrez_taxa.pl Copying scripts/utilities/pairwise_kaks.PLS -> blib/script/pairwise_kaks.PLS Deleting blib/script/pairwise_kaks.PLS.bak blib/script/pairwise_kaks.PLS -> blib/script/bp_pairwise_kaks.pl Copying scripts/Bio-DB-GFF/fast_load_gff.PLS -> blib/script/fast_load_gff.PLS Deleting blib/script/fast_load_gff.PLS.bak blib/script/fast_load_gff.PLS -> blib/script/bp_fast_load_gff.pl Copying scripts/seqstats/chaos_plot.PLS -> blib/script/chaos_plot.PLS Deleting blib/script/chaos_plot.PLS.bak blib/script/chaos_plot.PLS -> blib/script/bp_chaos_plot.pl Copying scripts/taxa/taxonomy2tree.PLS -> blib/script/taxonomy2tree.PLS Deleting blib/script/taxonomy2tree.PLS.bak blib/script/taxonomy2tree.PLS -> blib/script/bp_taxonomy2tree.pl Copying scripts/utilities/bp_mrtrans.PLS -> blib/script/bp_mrtrans.PLS Deleting blib/script/bp_mrtrans.PLS.bak blib/script/bp_mrtrans.PLS -> blib/script/bp_mrtrans.pl Copying scripts/utilities/search2alnblocks.PLS -> blib/script/search2alnblocks.PLS Deleting blib/script/search2alnblocks.PLS.bak blib/script/search2alnblocks.PLS -> blib/script/bp_search2alnblocks.pl Copying scripts/utilities/download_query_genbank.PLS -> blib/script/download_query_genbank.PLS Deleting blib/script/download_query_genbank.PLS.bak blib/script/download_query_genbank.PLS -> blib/script/bp_download_query_genbank.pl Copying scripts/utilities/bp_nrdb.PLS -> blib/script/bp_nrdb.PLS Deleting blib/script/bp_nrdb.PLS.bak blib/script/bp_nrdb.PLS -> blib/script/bp_nrdb.pl Copying scripts/utilities/mask_by_search.PLS -> blib/script/mask_by_search.PLS Deleting blib/script/mask_by_search.PLS.bak blib/script/mask_by_search.PLS -> blib/script/bp_mask_by_search.pl Copying scripts/seqstats/gccalc.PLS -> blib/script/gccalc.PLS Deleting blib/script/gccalc.PLS.bak blib/script/gccalc.PLS -> blib/script/bp_gccalc.pl Copying scripts/popgen/composite_LD.PLS -> blib/script/composite_LD.PLS Deleting blib/script/composite_LD.PLS.bak blib/script/composite_LD.PLS -> blib/script/bp_composite_LD.pl Copying scripts/taxa/classify_hits_kingdom.PLS -> blib/script/classify_hits_kingdom.PLS Deleting blib/script/classify_hits_kingdom.PLS.bak blib/script/classify_hits_kingdom.PLS -> blib/script/bp_classify_hits_kingdom.pl Copying scripts/seqstats/aacomp.PLS -> blib/script/aacomp.PLS Deleting blib/script/aacomp.PLS.bak blib/script/aacomp.PLS -> blib/script/bp_aacomp.pl Copying scripts/Bio-DB-GFF/process_wormbase.PLS -> blib/script/process_wormbase.PLS Deleting blib/script/process_wormbase.PLS.bak blib/script/process_wormbase.PLS -> blib/script/bp_process_wormbase.pl Copying scripts/taxa/local_taxonomydb_query.PLS -> blib/script/local_taxonomydb_query.PLS Deleting blib/script/local_taxonomydb_query.PLS.bak blib/script/local_taxonomydb_query.PLS -> blib/script/bp_local_taxonomydb_query.pl Copying scripts/biblio/biblio.PLS -> blib/script/biblio.PLS Deleting blib/script/biblio.PLS.bak blib/script/biblio.PLS -> blib/script/bp_biblio.pl Copying scripts/seq/seqretsplit.PLS -> blib/script/seqretsplit.PLS Deleting blib/script/seqretsplit.PLS.bak blib/script/seqretsplit.PLS -> blib/script/bp_seqretsplit.pl Copying scripts/utilities/remote_blast.PLS -> blib/script/remote_blast.PLS Deleting blib/script/remote_blast.PLS.bak blib/script/remote_blast.PLS -> blib/script/bp_remote_blast.pl Copying scripts/Bio-DB-GFF/genbank2gff3.PLS -> blib/script/genbank2gff3.PLS Deleting blib/script/genbank2gff3.PLS.bak blib/script/genbank2gff3.PLS -> blib/script/bp_genbank2gff3.pl Copying scripts/searchio/search2table.PLS -> blib/script/search2table.PLS Deleting blib/script/search2table.PLS.bak blib/script/search2table.PLS -> blib/script/bp_search2table.pl Copying scripts/utilities/search2BSML.PLS -> blib/script/search2BSML.PLS Deleting blib/script/search2BSML.PLS.bak blib/script/search2BSML.PLS -> blib/script/bp_search2BSML.pl Copying scripts/seq/translate_seq.PLS -> blib/script/translate_seq.PLS Deleting blib/script/translate_seq.PLS.bak blib/script/translate_seq.PLS -> blib/script/bp_translate_seq.pl Manifying blib/script/bp_translate_seq.pl -> blib/bindoc/bp_translate_seq.pl.1 Manifying blib/script/bp_chaos_plot.pl -> blib/bindoc/bp_chaos_plot.pl.1 Manifying blib/script/bp_flanks.pl -> blib/bindoc/bp_flanks.pl.1 Manifying blib/script/bp_mask_by_search.pl -> blib/bindoc/bp_mask_by_search.pl.1 Manifying blib/script/bp_hmmer_to_table.pl -> blib/bindoc/bp_hmmer_to_table.pl.1 Manifying blib/script/bp_filter_search.pl -> blib/bindoc/bp_filter_search.pl.1 Manifying blib/script/bp_seqretsplit.pl -> blib/bindoc/bp_seqretsplit.pl.1 Manifying blib/script/bp_bulk_load_gff.pl -> blib/bindoc/bp_bulk_load_gff.pl.1 Manifying blib/script/bp_dbsplit.pl -> blib/bindoc/bp_dbsplit.pl.1 Manifying blib/script/bp_search2BSML.pl -> blib/bindoc/bp_search2BSML.pl.1 Manifying blib/script/bp_search2tribe.pl -> blib/bindoc/bp_search2tribe.pl.1 Manifying blib/script/bp_biofetch_genbank_proxy.pl -> blib/bindoc/bp_biofetch_genbank_proxy.pl.1 Manifying blib/script/bp_search2gff.pl -> blib/bindoc/bp_search2gff.pl.1 Manifying blib/script/bp_seqconvert.pl -> blib/bindoc/bp_seqconvert.pl.1 Manifying blib/script/bp_meta_gff.pl -> blib/bindoc/bp_meta_gff.pl.1 Manifying blib/script/bp_make_mrna_protein.pl -> blib/bindoc/bp_make_mrna_protein.pl.1 Manifying blib/script/bp_local_taxonomydb_query.pl -> blib/bindoc/bp_local_taxonomydb_query.pl.1 Manifying bli b/script/bp_sreformat.pl -> blib/bindoc/bp_sreformat.pl.1 Manifying blib/script/bp_search2table.pl -> blib/bindoc/bp_search2table.pl.1 Manifying blib/script/bp_taxid4species.pl -> blib/bindoc/bp_taxid4species.pl.1 Manifying blib/script/bp_biblio.pl -> blib/bindoc/bp_biblio.pl.1 Manifying blib/script/bp_gccalc.pl -> blib/bindoc/bp_gccalc.pl.1 Manifying blib/script/bp_download_query_genbank.pl -> blib/bindoc/bp_download_query_genbank.pl.1 Manifying blib/script/bp_remote_blast.pl -> blib/bindoc/bp_remote_blast.pl.1 Manifying blib/script/bp_aacomp.pl -> blib/bindoc/bp_aacomp.pl.1 Manifying blib/script/bp_mrtrans.pl -> blib/bindoc/bp_mrtrans.pl.1 Manifying blib/script/bp_split_seq.pl -> blib/bindoc/bp_split_seq.pl.1 Manifying blib/script/bp_mutate.pl -> blib/bindoc/bp_mutate.pl.1 Manifying blib/script/bp_genbank2gff3.pl -> blib/bindoc/bp_genbank2gff3.pl.1 Manifying blib/script/bp_search2alnblocks.pl -> blib/bindoc/bp_search2alnblocks.pl.1 Manifying blib/script/bp_process_sgd.pl -> blib/bindoc/bp_process_sgd.pl.1 Manifying blib/script/bp_genbank2gff.pl -> blib/bindoc/bp_genbank2gff.pl.1 Manifying blib/script/bp_fast_load_gff.pl -> blib/bindoc/bp_fast_load_gff.pl.1 Manifying blib/script/bp_fetch.pl -> blib/bindoc/bp_fetch.pl.1 Manifying blib/script/bp_index.pl -> blib/bindoc/bp_index.pl.1 Manifying blib/script/bp_taxonomy2tree.pl -> blib/bindoc/bp_taxonomy2tree.pl.1 Manifying blib/script/bp_nexus2nh.pl -> blib/bindoc/bp_nexus2nh.pl.1 Manifying blib/script/bp_oligo_count.pl -> blib/bindoc/bp_oligo_count.pl.1 Manifying blib/script/bp_bioflat_index.pl -> blib/bindoc/bp_bioflat_index.pl.1 Manifying blib/script/bp_biogetseq.pl -> blib/bindoc/bp_biogetseq.pl.1 Manifying blib/script/bp_extract_feature_seq.pl -> blib/bindoc/bp_extract_feature_seq.pl.1 Manifying blib/script/bp_tree2pag.pl -> blib/bindoc/bp_tree2pag.pl.1 Manifying blib/script/bp_unflatten_seq.pl -> blib/bindoc/bp_unflatten_seq.pl.1 Manifying blib/script/bp_parse_hmmsearch.pl -> blib/bindoc/bp_parse_hmmsearch.pl.1 Manifying blib/script/bp_pairwise_kaks.pl -> blib/bindoc/bp_pairwise_kaks.pl.1 Manifying blib/script/bp_query_entrez_taxa.pl -> blib/bindoc/bp_query_entrez_taxa.pl.1 Manifying blib/script/bp_seqret.pl -> blib/bindoc/bp_seqret.pl.1 Manifying blib/script/bp_seq_length.pl -> blib/bindoc/bp_seq_length.pl.1 Manifying blib/script/bp_load_gff.pl -> blib/bindoc/bp_load_gff.pl.1 Manifying blib/script/bp_fastam9_to_table.pl -> blib/bindoc/bp_fastam9_to_table.pl.1 Manifying blib/script/bp_process_wormbase.pl -> blib/bindoc/bp_process_wormbase.pl.1 Manifying blib/script/bp_nrdb.pl -> blib/bindoc/bp_nrdb.pl.1 Manifying blib/script/bp_classify_hits_kingdom.pl -> blib/bindoc/bp_classify_hits_kingdom.pl.1 Manifying blib/script/bp_composite_LD.pl -> blib/bindoc/bp_composite_LD.pl.1 Manifying blib/script/bp_blast2tree.pl -> blib/bindoc/bp_blast2tree.pl.1 Manifying blib/script/bp_heterogeneity_test.pl -> blib/bindoc/bp_heterogeneity_test.pl.1 Manifying blib/script/bp_generate_histogram.pl -> blib/bindoc/bp_generate_histogram.pl.1 Manifying blib/script/bp_process_gadfly.pl -> blib/bindoc/bp_process_gadfly.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_translate_seq.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_chaos_plot.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_flanks.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_mask_by_search.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_hmmer_to_table.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_filter_search.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_seqretsplit.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_bulk_load_gff.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_dbsplit.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_search2BSML.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_search2tribe.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_biofetch_genbank_proxy.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_search2gff.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_seqconvert.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_meta_gff.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_make_mrna_protein.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_local_taxonomydb_query.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_sreformat.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_search2table.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_taxid4species.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_biblio.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_gccalc.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_download_query_genbank.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_remote_blast.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_aacomp.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_mrtrans.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_split_seq.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_mutate.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_genbank2gff3.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_search2alnblocks.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_process_sgd.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_genbank2gff.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_fast_load_gff.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_fetch.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_index.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_taxonomy2tree.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_nexus2nh.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0 -1.fc11.noarch/usr/share/man/man1/bp_oligo_count.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_bioflat_index.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_biogetseq.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_extract_feature_seq.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_tree2pag.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_unflatten_seq.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_parse_hmmsearch.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_pairwise_kaks.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_query_entrez_taxa.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_seqret.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_seq_length.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_load_gff.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_fastam9_to_table.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_process_wormbase.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_nrdb.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_classify_hits_kingdom.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_composite_LD.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_blast2tree.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_heterogeneity_test.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_generate_histogram.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man1/bp_process_gadfly.pl.1 Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/WebAgent.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LocationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DBLinkContainerI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AnalysisI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/MapIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PullParserI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SimpleAnalysisI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/IdCollectionI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/UpdateableSeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO.pm Installing /buil ddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DescribableI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/RangeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureHolderI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AnalysisResultI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqAnalysisParserI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AnalysisParserI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchDist.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AnnotationCollectionI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeatureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ParameterBaseI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PrimarySeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AnnotationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PrimarySeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SimpleAlign.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterIO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/HandlerBaseI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/IdentifiableI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Species.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LocatableSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DasI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqUtils.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Range.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Perl.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AnnotatableI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ConfigData.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/MarkerI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/PopulationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/B io/PopGen/TagHaplotype.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Genotype.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Population.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/IndividualI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/PopStats.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/GenotypeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Utilities.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Statistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/HtSNP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Individual.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Marker.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Simulation/Coalescent.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/Simulation/GeneticDrift.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/IO/prettybase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/IO/phase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/IO/csv.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen/IO/hapmap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/MatrixI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/Generic.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/Mlagan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/Scoring.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PhylipDist.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/Psm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/ProtMatrix.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/PsmI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/InstanceSite.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/InstanceSiteI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/PsmHeader.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/SiteMatrix.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Mat rix/PSM/SiteMatrixI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/PsmHeaderI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/ProtPsm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/IO/transfac.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/IO/masta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/IO/psiblast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/IO/mast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/PSM/IO/meme.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/IO/phylip.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/IO/scoring.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix/IO/mlagan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/MolEvol/CodonModel.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/GuessSeqFormat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/TandemRepeatsFinder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/RepeatMasker.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/RNAMotif.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Gel.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/SeqPattern.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Prints.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/dpAlign.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/pICalculator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/SeqStats.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Match.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/QRNA.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Sigcleave.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/ESTScan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/AnalysisResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Infernal.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/ECnumber.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Pseudowise.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Genscan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/GFF.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/RandomDistFunctions. pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Primer3.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Seg.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Signalp.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/IUPAC.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/tRNAscanSE.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/SiRNA.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/ERPIN.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Promoterwise.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Geneid.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Fgenesh.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Hmmpfam.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Grail.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/CodonTable.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/AlignFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/isPcr.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/MZEF.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Est2Genome.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/TargetP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/PrositeScan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/FootPrinter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Coil.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Lucy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/ipcress.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/OddCodes.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Genemark.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Profile.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Glimmer.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Genewise.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Protparam.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Genomewise.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Eponine.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tool s/Tmhmm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Blat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EPCR.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/pSW.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/SeqWords.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/HMM.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Spidey/Exon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Spidey/Results.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Summary.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Cookie.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Info.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/EUtilDataI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/EUtilParameters.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/HistoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Link.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/History.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Query.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Info/LinkInfo.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Info/FieldInfo.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Query/GlobalQuery.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Link/UrlLink.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Link/LinkSet.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Summary/DocSum.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EUtilities/Summary/Item.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/HMMER/Set.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/HMMER/Results.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/HMMER/Domain.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/ParametersI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/RemoteBlast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/StandAloneNCBIBlast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/StandAloneBlast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/ve ndor_perl/5.10.0/Bio/Tools/Run/StandAloneWUBlast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/WrapperBase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/GenericParameters.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/SimpleAnalysisBase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/ELM.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/GOR4.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/HNN.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/Sopma.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/NetPhos.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/Scansite.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/Domcut.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/Protein/Mitoprot.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Analysis/DNA/ESEfinder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/Gerp.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/PAML.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/Gumby.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/Molphy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/PAML/ModelResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/PAML/Result.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/Molphy/Result.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Phylo/Phylip/ProtDist.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Sim4/Exon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Sim4/Results.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Primer/AssessorI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Primer/Feature.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Primer/Pair.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Primer/Assessor/Base.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Alignment/Consed.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Alignment/Trim.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/SiRNA/Ruleset/tuschl.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/SiRNA/Ruleset/saigo .pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Signalp/ExtendedSignalp.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Prediction/Gene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Prediction/Exon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/EMBOSS/Palindrome.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/ChainI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Mutation.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/AARange.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/SeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Repeat_Unit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/DNA.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Transcript.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Range.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Repeat_Region.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Intron.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Gene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Translation.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Prim_Transcript.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Exon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Chain.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/Mutator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/IO/Loader.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq/IO/BioPerl.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/mega.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/xmfa.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/prodom.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/emboss.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/mase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/phylip.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/proda.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/maf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/pfam.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/nexus.pm Installing /builddir/build/BUILDROOT/ perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/bl2seq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/msf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/psi.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/po.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/clustalw.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/largemultifasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/metafasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/stockholm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/meme.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/arp.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/selex.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/Handler/GenericAlignHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/pag.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/nexus.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/TreeEventBuilder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/lintree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/svggraph.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/tabtree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/cluster.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/phyloxml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/nhx.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO/newick.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/PositionWithSequence.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Physical.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/SimpleMap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Clone.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/MappableI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/CytoMap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/FPCMarker.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/EntityI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/PositionHandlerI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/P ositionI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/MarkerI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Mappable.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/GeneMap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Gene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Position.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Microsatellite.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/CytoPosition.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/LinkagePosition.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Prediction.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Contig.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Marker.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/Relative.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/PositionHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/GenePosition.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/GeneRelative.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/LinkageMap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/MapI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/OrderedPosition.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/CytoMarker.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/TranscriptionFactor.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/OrderedPositionWithDistance.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Map/RelativeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/chaos.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/fastq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/table.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/largefasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/ctf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/swissdriver.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/raw.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/metafasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/qual.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/kegg.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/ven dor_perl/5.10.0/Bio/SeqIO/pln.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/locuslink.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/scf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/phd.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/embl.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/tigr.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/asciitree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/agave.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/genbank.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/abi.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/strider.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/tigrxml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/interpro.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/chadoxml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/gcg.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/alf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/bsml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/excel.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/exp.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/embldriver.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/swiss.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/FTHelper.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/entrezgene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/ztr.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/chaosxml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/pir.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/lasergene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/MultiFile.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/bsml_sax.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/gbdriver.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/tinyseq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/game.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/flybase_chadox ml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/ace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/tab.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/tinyseq/tinyseqHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/game/seqHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/game/gameSubs.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/game/gameWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/game/gameHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/game/featHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO/Handler/GenericRichSeqHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/ObjectFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/SeqAnalysisParserFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/LocationFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/DriverFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/ObjectFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/ApplicationFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/FTLocationFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/SequenceProcessorI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/MapFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/AnalysisI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/ObjectBuilderI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/SequenceFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/SequenceStreamI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/SeqAnalysisParserFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/TreeFactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SwissProt.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/BiblioI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Failover.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/UpdateableSeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/RefSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/TFBS.pm Installing /builddir/build/BUILDRO OT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/NCBIHelper.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/ReferenceI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/RandomAccessI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/BioFetch.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/WebDBSeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqVersion.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GenBank.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/MeSH.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/EMBL.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/DBFetch.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Taxonomy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Ace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/HIV.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Expression.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Qual.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/InMemoryCache.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/EntrezGene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/FileCache.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqHound.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/QueryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/EUtilities.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/CUTG.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Universal.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Registry.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GenericWebAgent.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/LocationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GenPept.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Feature.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Typename.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bi o/DB/GFF/Homol.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Segment.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Featname.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/RelSegment.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/so_transcript.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_unigene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_acembly.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/gene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/alignment.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/match.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_softberry.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/transcript.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/none.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_refgene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/clone.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/coding.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_genscan.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/processed_transcript.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/orf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/memory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/berkeleydb.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/biofetch_oracle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/biofetch.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/ace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor /berkeleydb/iterator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/memory/iterator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/pg.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/mysql.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/mysqlace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/iterator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/oracleace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Adaptor/dbi/oracle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Util/Rearrange.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/GFF/Util/Binning.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Biblio/biofetch.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Biblio/eutils.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Biblio/soap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Expression/geo.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Query/WebQuery.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Query/HIVQuery.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Query/GenBank.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/NormalizedFeatureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Segment.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/NormalizedFeature.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/bdb.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/LoadHelper.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/Loader .pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/GFF2Loader.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/GFF3Loader.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/memory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/berkeleydb.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/DBI/mysql.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqFeature/Store/DBI/Iterator.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/SeqVersion/gi.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/HIV/HIVAnnotProcessor.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/HIV/HIVQueryHelper.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/HIV/lanl-schema.xml Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat/BDB.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat/BinarySearch.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat/BDB/swiss.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat/BDB/genbank.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat/BDB/fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Flat/BDB/embl.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Taxonomy/list.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Taxonomy/entrez.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/Taxonomy/flatfile.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/DB/TFBS/transfac_pro.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/megablast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/blasttable.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/wise.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/hmmer.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/psl.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/infernal.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/rnamotif.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/axt.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/sim4.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/waba.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1. fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/erpin.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/exonerate.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/SearchResultEventBuilder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/blast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/FastHitEventBuilder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/EventHandlerI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/SearchWriterI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/blast_pull.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/hmmer_pull.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/IteratedSearchResultEventBuilder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/blastxml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/cross_match.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/HSPTableWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/GbrowseGFF.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/BSMLResultWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/ResultTableWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/HitTableWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/TextResultWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/Writer/HTMLResultWriter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/XML/BlastHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO/XML/PsiBlastHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Processor.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/BlastUtils.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/GenericDatabase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/BlastStatistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/StatisticsI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/SearchUtils.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/GenericStatistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/DatabaseI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/PSLHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/W ABAHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/ModelHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/PsiBlastHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/FastaHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/GenericHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/HmmpfamHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/HSPFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/PullHSPI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/HMMERHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/HSPI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/BlastHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/HSP/BlastPullHSP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/HmmpfamResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/HMMERResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/BlastPullResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/ResultI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/BlastResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/WABAResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/ResultFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/GenericResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/CrossMatchResult.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Result/PullResultI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/PsiBlastHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/BlastPullHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/HitFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/HitI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/PullHitI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/BlastHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/HMMERHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/HmmpfamHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/GenericHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5. 10.0/Bio/Search/Hit/ModelHit.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Hit/Fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Iteration/GenericIteration.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Search/Iteration/IterationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Cluster/UniGeneI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Cluster/UniGene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Cluster/FamilyI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Cluster/ClusterFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Cluster/SequenceFamily.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/PubmedBookArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Provider.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/BiblioBase.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Thesis.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Article.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Organisation.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/MedlineJournalArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/BookArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Journal.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/PubmedJournalArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Ref.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/TechReport.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Person.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/WebResource.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/MedlineBook.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/JournalArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/MedlineBookArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Patent.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/MedlineArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/PubmedArticle.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Service.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/MedlineJournal.pm Installing /builddir/build/BUILDROOT/perl-bioper l-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Proceeding.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/Book.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/IO/medline2ref.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/IO/pubmedxml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/IO/pubmed2ref.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio/IO/medlinexml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/Utilities.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/AlignI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/DNAStatistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/ProteinStatistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/StatisticsI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/PairwiseStatistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/ProbeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/DataSet.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/Platform.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/FeatureGroup.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/FeatureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/Contact.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/Sample.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/FeatureGroup/FeatureGroupMas50.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression/FeatureSet/FeatureSetMas50.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Lite.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Collection.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Generic.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Annotated.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/SimilarityPair.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Similarity.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/AnnotationAdaptor.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/TypedSeqFeatureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Primer.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/FeaturePair.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11 .noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/PositionProxy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/CollectionI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Computation.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/Exon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/NC_Feature.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/TranscriptI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/Transcript.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/GeneStructureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/Poly_A_site.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/ExonI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/Promoter.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/Intron.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/UTR.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Gene/GeneStructure.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Tools/TypeMapper.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Tools/Unflattener.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Tools/IDHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/Tools/FeatureNamer.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/SiRNA/Oligo.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature/SiRNA/Pair.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Graph.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/ExtrapolatingPair.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Result.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/MapperI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Utils.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Chain.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Collection.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Pair.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/ResultI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/GeneMapper.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Result/Gap.pm Installing /buildd ir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate/Result/Match.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/DistanceFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/TreeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/AlleleNode.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/TreeFunctionsI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/NodeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/RandomFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/Compatible.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/Node.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/NodeNHX.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/AnnotatableNode.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/Tree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/Statistics.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree/Draw/Cladogram.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/RootI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Test.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Build.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Root.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/HTTPget.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Storable.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Version.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Utilities.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Exception.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Root/Test/Warn.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/Fuzzy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/SplitLocationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/Atomic.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/CoordinatePolicyI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/AvWithinCoordPolicy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/Simple.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/Split.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendo r_perl/5.10.0/Bio/Location/WidestCoordPolicy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/NarrowestCoordPolicy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Location/FuzzyLocationI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO/bed.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO/vecscreen_simple.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO/interpro.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO/gff.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO/gtf.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO/ptt.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Swissprot.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/BlastTable.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/AbstractSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/GenBank.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Stockholm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/SwissPfam.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/EMBL.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Qual.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Fasta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Hmmer.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Fastq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Blast.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Index/Abstract.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/OntologyTerm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Target.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/SimpleValue.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/AnnotationFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Reference.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Collection.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Tree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/DBLink.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/StructuredValue.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Relation.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl 5/vendor_perl/5.10.0/Bio/Annotation/TagTree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Comment.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/TypeManager.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/BaseSeqProcessor.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/TraceI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/PrimaryQual.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/PrimedSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/SeqFastaSpeedFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/SeqFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/LargePrimarySeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/SequenceTrace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/Meta.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/Quality.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/QualI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/SeqWithQuality.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/LargeLocatableSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/RichSeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/RichSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/LargeSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/EncodedSeq.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/MetaI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/LargeSeqI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/SeqBuilder.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq/Meta/Array.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/Enzyme.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/EnzymeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/EnzymeCollection.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/Analysis.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/IO/prototype.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/IO/base.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/IO/itype2.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ Restriction/IO/withrefm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/IO/bairoch.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/Enzyme/MultiCut.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction/Enzyme/MultiSite.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/Phenotype.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/Correlate.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/PhenotypeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/Measure.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/OMIM/MiniMIMentry.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/OMIM/OMIMparser.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/OMIM/OMIMentry.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/MeSH/Twig.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype/MeSH/Term.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/Allele.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/SeqDiff.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/RNAChange.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/AAReverseMutate.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/DNAMutation.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/SNP.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/VariantI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/AAChange.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/IO/xml.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation/IO/flat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/Chain.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/StructureI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/Atom.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/Model.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/Entry.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/Residue.pm Installing /builddir/bui ld/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/IO/pdb.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/SecStr/DSSP/Res.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure/SecStr/STRIDE/Res.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/ContigAnalysis.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/ScaffoldI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/Singlet.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/Scaffold.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/Contig.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/Tools/ContigSpectrum.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/IO/phrap.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/IO/tigr.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly/IO/ace.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/DocumentRegistry.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/OntologyI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/RelationshipType.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/RelationshipI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/OBOterm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/TermI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/OntologyEngineI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/Term.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/OntologyStore.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/Ontology.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/OBOEngine.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/SimpleOntologyEngine.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/PathI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/Relationship.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/Path.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/InterProTerm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/RelationshipFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/GOterm.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/p erl5/vendor_perl/5.10.0/Bio/Ontology/TermFactory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Event/EventHandlerI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Event/EventGeneratorI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy/Tree.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy/Node.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy/FactoryI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy/Taxon.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/CodonUsage/Table.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/CodonUsage/IO.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol/AlphabetI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol/DNAAlphabet.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol/Symbol.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol/Alphabet.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol/ProteinAlphabet.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol/SymbolI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqEvolution/EvolutionI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqEvolution/DNAPoint.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqEvolution/Factory.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/MapIO/mapmaker.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/MapIO/fpc.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/InterProParser.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/soflat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/goflat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/obo.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/simplehierarchy.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/dagflat.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/Handlers/InterProHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO/Handlers/BaseSAXHandler.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10 .0/Bio/Das/SegmentI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Das/FeatureTypeI.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterIO/unigene.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterIO/dbsnp.pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::interpro.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::SiRNA::Ruleset::tuschl.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::FeatureGroup.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::dagflat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::SeqFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::CoordinatePolicyI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Storable.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::Atomic.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::SearchWriterI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::RNAChange.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Exception.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::LocationFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Ref.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::WABAHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::embl.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::DriverFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Genemark.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::MedlineArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::ChainI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::PrositeScan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Intron.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::IO::scoring.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::LargeLocatableSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::msf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Glimmer.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::flybase_chadoxml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::RelativeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Profile.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Mutator.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share /man/man3/Bio::Tools::Primer::Pair.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::TypeManager.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::ProbeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::alignment.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::IteratedSearchResultEventBuilder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::LinkagePosition.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Primer::Assessor::Base.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Util::Binning.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Abstract.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::GenotypeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::pSW.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO::interpro.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::TranscriptI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::tabtree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::NC_Feature.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Provider.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::PhenotypeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::bsml_sax.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::OrderedPosition.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::BlastUtils.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::blastxml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Expression::geo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::FootPrinter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::ApplicationFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::scf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Info.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::PopStats.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqEvolution::Factory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bi o::DB::Query::GenBank.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_unigene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::Domcut.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::blast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::Model.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Hmmpfam.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::CodonUsage::Table.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::SequenceStreamI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Prim_Transcript.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::MolEvol::CodonModel.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::TagTree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::EMBL.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Microsatellite.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Alignment::Trim.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Geneid.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::IO::prototype.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::Entry.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Contig.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Range.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_refgene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::Contig.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::AnalysisResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::IdentifiableI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Mappable.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::ProtPsm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Taxonomy::Taxon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::orf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::svggraph.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::IO::hapmap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::IO::withrefm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::DistanceFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::Exon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Query::WebQuery.3pm Installing /builddir/b uild/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::CrossMatchResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Universal.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::NodeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::Gerp.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::MultiFile.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::SeqFastaSpeedFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Link.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Tmhmm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::Enzyme::MultiSite.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Cookie.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::InterProParser.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::chadoxml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Qual.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::IO::masta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::Reference.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::XML::PsiBlastHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::IO::meme.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::MetaI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::pag.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::IO::Loader.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::arp.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::SimpleOntologyEngine.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::NetPhos.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::TermI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::PositionProxy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqEvolution::DNAPoint.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::ace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::CytoPosition.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::ERPIN.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Cluster::UniGene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::LocationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeat ure::Store::DBI::Iterator.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::GenericHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::EUtilParameters.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::IO::mast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::blasttable.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Genewise.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Primer3.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::EntityI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Spidey::Results.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::waba.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::IO::pubmed2ref.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Species.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::InstanceSite.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::SiRNA::Ruleset::saigo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Sim4::Exon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::StandAloneWUBlast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::EnzymeCollection.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::processed_transcript.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Ace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::DNA.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::HMMER::Results.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_softberry.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::OBOEngine.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::ztr.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::MapIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::DBFetch.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Test.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::BookArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Coil.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Population.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::PsmHeaderI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::EnzymeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::GeneStructureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::MedlineBook.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Proceeding.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Fastq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqUtils.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Failover.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::asciitree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::SiteMatrixI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Gel.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Registry.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::game::featHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::BlastHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::SequenceFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::TechReport.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Blat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Protparam.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::metafasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::Sample.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::CytoMarker.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::TargetP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::NCBIHelper.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::table.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Root.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Spidey::Exon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::EUtilDataI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::Handler::GenericAlignHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Event::EventGeneratorI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::exonerate.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::ace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::QueryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::SeqAnalysisParserFac tory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::maf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::StandAloneNCBIBlast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::Sopma.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::BlastHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqHound.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::game::gameHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Generic.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::SearchUtils.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::ObjectBuilderI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Relative.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Position.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Symbol::DNAAlphabet.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Utilities.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::MatrixI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::largemultifasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::MeSH.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::pir.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::IO::flat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_twinscan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Computation.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::Target.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::ipcress.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::PSLHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::ClusterI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Typename.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::coding.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Blast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::NodeNHX.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Organisation.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::OBOterm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man 3/Bio::Structure::Residue.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AnalysisResultI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Expression.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::excel.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::Compatible.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::emboss.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::HmmpfamHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Prints.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Iteration::GenericIteration.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Primer.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::ScaffoldI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::Singlet.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::HSPI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::game::gameSubs.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::MedlineJournalArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Das::FeatureTypeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::HSPFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::gbdriver.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Symbol::Symbol.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Prediction::Exon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::BiblioI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::GOR4.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Marker.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Version.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::FuzzyLocationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_genscan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::IO::phase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Align::DNAStatistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::PubmedJournalArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Summary.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Eponine.3pm Installing /builddir/build/BUILDR OOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::Allele.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::Phenotype.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::SeqAnalysisParserFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::swiss.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::ReferenceI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::ClusterIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Taxonomy::entrez.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::GenePosition.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::FPCMarker.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::mase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::soflat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::MapIO::fpc.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::PsiBlastHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::IO::bairoch.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::IO::csv.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::IO::medlinexml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::WABAResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::none.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::HmmpfamResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GenBank.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::psi.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::agave.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::swissdriver.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::VariantI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Similarity.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DescribableI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::IO::medline2ref.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::OntologyStore.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::Promoter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::HandlerBaseI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::Path.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::TermFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::Analysis. 3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_acembly.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::ObjectFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::SimpleValue.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Align::StatisticsI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::TreeFunctionsI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::IO::itype2.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::entrezgene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor02.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::tigrxml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::nexus.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::RandomDistFunctions.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::phd.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Fgenesh.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Summary::DocSum.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PhylipDist.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::CUTG.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::CytoMap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::TFBS::transfac_pro.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::Platform.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::RelSegment.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::ECnumber.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Alignment::Consed.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::obo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::Tree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureHolderI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::AlleleNode.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::IUPAC.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Range.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::AnnotatableNode.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::GbrowseGFF.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PrimarySeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::isPcr.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/s hare/man/man3/Bio::Tools::EPCR.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Stockholm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::Molphy::Result.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Align::AlignI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::LargePrimarySeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::proda.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Genomewise.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg_fts.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat::BDB::swiss.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::game.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::FTHelper.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LocatableSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Info::FieldInfo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::GenericHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::XML::BlastHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::BSMLResultWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO::gff.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::CodonTable.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::bl2seq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Cluster::FamilyI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::Term.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::Fuzzy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::FTLocationFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::TreeEventBuilder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Repeat_Region.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::Enzyme::MultiCut.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::MappableI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::OMIM::OMIMentry.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::TraceI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::PositionI.3pm Installing /build dir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::stockholm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::selex.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GenericWebAgent.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::SiRNA::Oligo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::OntologyI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Das::SegmentI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::WebAgent.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::cluster.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::BaseSeqProcessor.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Util::Rearrange.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AnalysisI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::simplehierarchy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::HIV::HIVAnnotProcessor.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::PsiBlastHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::phylip.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::DocumentRegistry.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::Psm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::Handlers::InterProHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Align::PairwiseStatistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::SiRNA.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::OntologyEngineI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::pfam.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Taxonomy::FactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Lite.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::lintree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Query::GlobalQuery.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Infernal.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::hmmer_pull.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqVersion.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::StatisticsI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SimpleAlign.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bi o::Factory::TreeFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::RepeatMasker.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::GeneMap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::RandomAccessI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Marker.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::Generic.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::HTTPget.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::SwissPfam.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::PullHitI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Query.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Individual.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::GuessSeqFormat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::xmfa.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::LinkageMap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::rnamotif.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::ExonI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Thesis.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::GenericStatistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::alf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::SequenceProcessorI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Processor.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AnalysisParserI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::BlastPullResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::OMIM::OMIMparser.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Book.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Biblio::eutils.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DBLinkContainerI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::AbstractSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::Split.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Symbol::ProteinAlphabet.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::StructuredValue.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::GeneStructure.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::OMIM::OMIMentryAllelicVariant.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EMBOSS::Palindrome.3pm Installing /builddir/build/BUILDROOT/perl-bio perl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::cross_match.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::GeneRelative.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::MarkerI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::tinyseq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::erpin.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::PathI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::DataSet.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Simulation::Coalescent.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqVersion::gi.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::TandemRepeatsFinder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Taxonomy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::Mitoprot.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::DatabaseI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::Gumby.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DasI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::tigr.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::GenBank.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO::ptt.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Biblio::soap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::hmmer.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::tRNAscanSE.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::IO::tigr.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::JournalArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Sim4::Results.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Hmmer.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::MapIO::mapmaker.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Prediction::Gene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Test::Warn.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::meme.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::SeqPattern.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::RichSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::HMMERHSP.3pm Installing /builddir/build/BUILDROOT/perl-b ioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::ctf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Taxonomy::list.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::NarrowestCoordPolicy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Sigcleave.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Taxonomy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::Tools::ContigSpectrum.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::GOterm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat::BDB::embl.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::MZEF.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::MeSH::Twig.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Primer::Feature.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Featname.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::SeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::oracleace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::FeaturePair.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Repeat_Unit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::Handler::GenericRichSeqHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::SNP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::pICalculator.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GenPept.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::SiteMatrix.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::RelationshipFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::WebResource.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::ParameterBaseI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::HitFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO::bed.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::ConfigData.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::InterProTerm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Simulation::GeneticDrift.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::metafasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_ handle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::Enzyme.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::QRNA.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::AvWithinCoordPolicy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Symbol::AlphabetI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Genscan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::Relation.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::Draw::Cladogram.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::IO::pubmedxml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Homol.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::FastHitEventBuilder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::SiRNA::Pair.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::MapFactoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqEvolution::EvolutionI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::OddCodes.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::psl.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::TranscriptionFactor.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::RangeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqAnalysisParserI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Clone.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::chaos.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::TFBS.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::IO::pdb.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Align::Utilities.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Transcript.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::po.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::EMBL.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::FeatureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::QualI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::nhx.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Promoterwise.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::Scaffold.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::iterator.3pm Installing /bu ilddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::locuslink.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Est2Genome.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::Atom.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::GenericDatabase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::PullHSPI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Segment.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::RootI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::HistoryI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::ContigAnalysis.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::genbank.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::HmmpfamHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::HMMER::Set.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::CodonUsage::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::IO::xml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::PsmI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Service.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::RichSeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::PubmedBookArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::phyloxml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::Fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Summary::Item.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::MapperI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::infernal.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::MapI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::gcg.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::HSPTableWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::PrimaryQual.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Signalp.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Info::LinkInfo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat::BDB.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::Meta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/m an3/Bio::SeqFeature::Gene::Intron.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::SequenceTrace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::Collection.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::HitTableWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::ResultTableWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::PrimedSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::Molphy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AnnotationCollectionI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::SplitLocationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::RandomFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Patent.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::TreeI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::BiblioBase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::StandAloneBlast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::transcript.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PullParserI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::Scansite.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::MedlineBookArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Taxonomy::flatfile.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::SimilarityPair.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::BlastTable.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::BlastPullHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::pln.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::Contact.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_ensgene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Event::EventHandlerI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LocationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::AAChange.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::CollectionI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Taxonomy::Tree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::Tree.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::qual.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::AlignFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::P SM::IO::psiblast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::EUtilities.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Restriction::IO::base.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::FileCache.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::EncodedSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::Statistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Match.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::HTMLResultWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Primer::AssessorI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::Build.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::PositionWithSequence.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::IO::phylip.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Tools::FeatureNamer.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Pair.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Annotated.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Query::HIVQuery.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::SecStr::DSSP::Res.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::PopulationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Translation.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::embldriver.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::SearchResultEventBuilder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::ObjectFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SwissProt.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::gene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::Correlate.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::ParametersI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::largefasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::chaosxml.3pm Inst alling /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Taxonomy::Node.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::ResultI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::axt.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::UpdateableSeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Tools::IDHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::FeatureGroup::FeatureGroupMas50.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat::BDB::genbank.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::blast_pull.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat::BinarySearch.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::PositionHandlerI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Link::UrlLink.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::megablast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::DBLink.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tree::Node.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Exon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::exp.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::match.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::bsml.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::prodom.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::ESTScan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Signalp::ExtendedSignalp.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Journal.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::Scoring.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::Chain.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::Measure.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::UpdateableSeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::HIV::HIVQueryHelper.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchDist.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Graph.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::IdCollectionI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::HitI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Sear ch::Result::BlastResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::LargeSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Expression::FeatureSet::FeatureSetMas50.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::game::seqHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Align::ProteinStatistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Feature.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::Comment.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Result.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::Poly_A_site.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Root::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::HMMERHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Biblio::biofetch.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::Quality.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::strider.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::HMM.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::Mlagan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::sim4.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::UTR.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Index::Swissprot.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::SeqStats.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::StructureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::mega.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::tinyseq::tinyseqHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::so_transcript.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::dpAlign.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::DNAMutation.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::HMMERResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::fastq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::wise.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::RelationshipType.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Article.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Symbol::Alphabet.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11 .noarch/usr/share/man/man3/Bio::Search::Result::PullResultI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::tab.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Collection.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Gene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::AnnotationFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::BlastPullHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::OntologyIO::goflat.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::Simple.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Phylo::Phylip::ProtDist.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Collection.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Aggregator::clone.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Gene::Transcript.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeatureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::IndividualI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Lucy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::WrapperBase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Tools::TypeMapper.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::MedlineJournal.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::kegg.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::ProtMatrix.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::PsmHeader.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::Tools::Unflattener.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Location::WidestCoordPolicy.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::GenericResult.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::PositionHandler.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::GFF.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::Ontology.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::PubmedArticle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SearchIO::Writer::TextResultWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::LargeSeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::nexus.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/shar e/man/man3/Bio::SearchIO::EventHandlerI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Seg.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::BioFetch.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::IO::phrap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Taxon.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::RNAMotif.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::RelationshipI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Factory::AnalysisI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Genotype.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::OrderedPositionWithDistance.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Coordinate::Utils.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::History.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Statistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::EntrezGene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AnnotationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Ontology::Relationship.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::HNN.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::SeqBuilder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::SeqWords.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::raw.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::TypedSeqFeatureI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Iteration::IterationI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Result::ResultFactory.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Chain.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::HtSNP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::Mutation.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::SimpleMap.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::Hit::ModelHit.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::HMMER::Domain.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::InstanceSiteI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::SecStr::STRIDE::Res.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Physical.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::InMemoryCache.3pm Installing /builddir/bui ld/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Perl.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::game::gameWriter.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::abi.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::AARange.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PrimarySeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Flat::BDB::fasta.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::GenericParameters.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqIO::lasergene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::IO::prettybase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Assembly::IO::ace.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Symbol::SymbolI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SimpleAnalysisI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::PSM::IO::transfac.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::LiveSeq::IO::BioPerl.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Annotation::OntologyTerm.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::RemoteBlast.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::MeSH::Term.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Pseudowise.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::HIV.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::SeqFeature::AnnotationAdaptor.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Gene.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Map::Prediction.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Biblio::Person.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::BlastStatistics.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::MarkerI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Grail.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::ModelHSP.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::WebDBSeqI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AlignIO::clustalw.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::TreeIO::newick.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::EUtilities::Link::LinkSet.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::Utilities.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::DNA::ESEfinder.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Search::HSP::FastaHSP.3pm Installing /builddir/build/B UILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Phenotype::OMIM::MiniMIMentry.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::Protein::ELM.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Tools::Analysis::SimpleAnalysisBase.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::FeatureIO::gtf.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::AnnotatableI.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::RefSeq.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::Meta::Array.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Structure::IO.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Variation::SeqDiff.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Seq::SeqWithQuality.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::PopGen::TagHaplotype.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::Matrix::IO::mlagan.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::oracle.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/man/man3/Bio::DB::Qual.3pm Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_sreformat.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seqconvert.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seqret.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_parse_hmmsearch.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_tree2pag.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_meta_gff.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_nexus2nh.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_flanks.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_filter_search.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_split_seq.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seqfeature_gff3.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_generate_histogram.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_heterogeneity_test.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_load_gff.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_biogetseq.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_fetch.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_mutate.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_process_sgd.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_index.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_dbsplit.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_oligo_count.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seq_length.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seqfeature_load.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_process_gadfly.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1. 6.0-1.fc11.noarch/usr/bin/bp_hmmer_to_table.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_fastam9_to_table.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_genbank2gff.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_biofetch_genbank_proxy.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_extract_feature_seq.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_search2gff.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_taxid4species.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_bulk_load_gff.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_blast2tree.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_search2tribe.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_make_mrna_protein.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_unflatten_seq.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_chaos_plot.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_bioflat_index.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_pairwise_kaks.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seqfeature_delete.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_query_entrez_taxa.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_fast_load_gff.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_mrtrans.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_taxonomy2tree.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_nrdb.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_search2alnblocks.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_gccalc.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_download_query_genbank.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_mask_by_search.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_composite_LD.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_aacomp.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_classify_hits_kingdom.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_biblio.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_process_wormbase.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_seqretsplit.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_local_taxonomydb_query.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_remote_blast.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_genbank2gff3.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_search2table.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_search2BSML.pl Installing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/bin/bp_translate_seq.pl Writing /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/auto/Bio/.packlist /usr/bin/perl maintenance/symlink_script.pl Will try to install symlinks to /usr/bin + find /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch -type f -a '(' -name .packlist -o '(' -name '*.bs' -a -empty ')' ')' -exec rm -f '{}' ';' + find /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch -type d -depth -exec rmdir '{}' ';' + find /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch -type f -name '*.pm' -exec chmod -x '{}' ';' + find /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch//usr/bin -type f -name '*.pl' -exec chmod 0755 '{}' ';' + /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/BioPerl-1.6.0 find: `debug' : No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-python-bytecompile + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3jBEmr + umask 022 + cd /builddir/build/BUILD + cd BioPerl-1.6.0 + unset DISPLAY + exit 0 Processing files: perl-bioperl-1.6.0-1.fc11 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.H7Rmey + umask 022 + cd /builddir/build/BUILD + cd BioPerl-1.6.0 + DOCDIR=/builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/doc/perl-bioperl-1.6.0 + export DOCDIR + rm -rf /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/doc/perl-bioperl-1.6.0 + /bin/mkdir -p /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/doc/perl-bioperl-1.6.0 + cp -pr examples models /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/doc/perl-bioperl-1.6.0 + cp -pr AUTHORS BUGS Changes DEPRECATED INSTALL LICENSE PLATFORMS README /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch/usr/share/doc/perl-bioperl-1.6.0 + exit 0 Provides: perl(Bio::Align::AlignI) perl(Bio::Align::DNAStatistics) perl(Bio::Align::PairwiseStatistics) perl(Bio::Align::ProteinStatistics) perl(Bio::Align::StatisticsI) perl(Bio::Align::Utilities) perl(Bio::AlignIO) perl(Bio::AlignIO::Handler::GenericAlignHandler) perl(Bio::AlignIO::arp) perl(Bio::AlignIO::bl2seq) perl(Bio::AlignIO::clustalw) perl(Bio::AlignIO::emboss) perl(Bio::AlignIO::fasta) perl(Bio::AlignIO::largemultifasta) perl(Bio::AlignIO::maf) perl(Bio::AlignIO::mase) perl(Bio::AlignIO::mega) perl(Bio::AlignIO::meme) perl(Bio::AlignIO::metafasta) perl(Bio::AlignIO::msf) perl(Bio::AlignIO::nexus) perl(Bio::AlignIO::pfam) perl(Bio::AlignIO::phylip) perl(Bio::AlignIO::po) perl(Bio::AlignIO::proda) perl(Bio::AlignIO::prodom) perl(Bio::AlignIO::psi) perl(Bio::AlignIO::selex) perl(Bio::AlignIO::stockholm) perl(Bio::AlignIO::xmfa) perl(Bio::AnalysisI) perl(Bio::AnalysisI::JobI) perl(Bio::AnalysisParserI) perl(Bio::AnalysisResultI) perl(Bio::AnnotatableI) perl(Bio::Annotation::AnnotationFactory) perl(Bio::Annotation::Collection) perl(Bio::Annotation::Comment) perl(Bio::Annotation::DBLink) perl(Bio::Annotation::OntologyTerm) perl(Bio::Annotation::Reference) perl(Bio::Annotation::Relation) perl(Bio::Annotation::SimpleValue) perl(Bio::Annotation::StructuredValue) perl(Bio::Annotation::TagTree) perl(Bio::Annotation::Target) perl(Bio::Annotation::Tree) perl(Bio::Annotation::TypeManager) perl(Bio::AnnotationCollectionI) perl(Bio::AnnotationI) perl(Bio::Assembly::Contig) perl(Bio::Assembly::ContigAnalysis) perl(Bio::Assembly::IO) perl(Bio::Assembly::IO::ace) perl(Bio::Assembly::IO::phrap) perl(Bio::Assembly::IO::tigr) perl(Bio::Assembly::Scaffold) perl(Bio::Assembly::ScaffoldI) perl(Bio::Assembly::Singlet) perl(Bio::Assembly::Tools::ContigSpectrum) perl(Bio::Biblio) perl(Bio::Biblio::Article) perl(Bio::Biblio::BiblioBase) perl(Bio::Biblio::Book) perl(Bio::Biblio::BookArticle) perl(Bio::Biblio::IO) perl(Bio::Biblio::IO::medline2ref) perl(Bio::Biblio::IO::medlinexml) perl(Bio::Biblio::IO::pubmed2ref) perl(Bio::Biblio::IO::pubmedxml) perl(Bio::Biblio::Journal) perl(Bio::Biblio::JournalArticle) perl(Bio::Biblio::MedlineArticle) perl(Bio::Biblio::MedlineBook) perl(Bio::Biblio::MedlineBookArticle) perl(Bio::Biblio::MedlineJournal) perl(Bio::Biblio::MedlineJournalArticle) perl(Bio::Biblio::Organisation) perl(Bio::Biblio::Patent) perl(Bio::Biblio::Person) perl(Bio::Biblio::Proceeding) perl(Bio::Biblio::Provider) perl(Bio::Biblio::PubmedArticle) perl(Bio::Biblio::PubmedBookArticle) perl(Bio::Biblio::PubmedJournalArticle) perl(Bio::Biblio::Ref) perl(Bio::Biblio::Service) perl(Bio::Biblio::TechReport) perl(Bio::Biblio::Thesis) perl(Bio::Biblio::WebResource) perl(Bio::Cluster::ClusterFactory) perl(Bio::Cluster::FamilyI) perl(Bio::Cluster::SequenceFamily) perl(Bio::Cluster::UniGene) perl(Bio::Cluster::UniGeneI) perl(Bio::ClusterI) perl(Bio::ClusterIO) perl(Bio::ClusterIO::dbsnp) perl(Bio::ClusterIO::unigene) perl(Bio::CodonUsage::IO) perl(Bio::CodonUsage::Table) perl(Bio::ConfigData) perl(Bio::Coordinate::Chain) perl(Bio::Coordinate::Collection) perl(Bio::Coordinate::ExtrapolatingPair) perl(Bio::Coordinate::GeneMapper) perl(Bio::Coordinate::Graph) perl(Bio::Coordinate::MapperI) perl(Bio::Coordinate::Pair) perl(Bio::Coordinate::Result) perl(Bio::Coordinate::Result::Gap) perl(Bio::Coordinate::Result::Match) perl(Bio::Coordinate::ResultI) perl(Bio::Coordinate::Utils) perl(Bio::DB::Ace) perl(Bio::DB::Biblio::biofetch) perl(Bio::DB::Biblio::eutils) perl(Bio::DB::Biblio::soap) perl(Bio::DB::BiblioI) perl(Bio::DB::BioFetch) perl(Bio::DB::CUTG) perl(Bio::DB::DBFetch) perl(Bio::DB::EMBL) perl(Bio::DB::EUtilities) perl(Bio::DB::EntrezGene) perl(Bio::DB::Expression) perl(Bio::DB::Expression::geo) perl(Bio::DB::Failover) perl(Bio::DB::Fasta) perl(Bio::DB::Fasta::Stream) perl(Bio::DB::FileCache) perl(Bio::DB::Flat) perl(Bio::DB::Flat::BDB) perl(Bio::DB::Flat::BDB::embl) perl(Bio::DB::Flat::BDB::fasta) perl(Bio::DB::Flat::BDB::genbank) perl(Bio::DB::Flat::BDB::swiss) perl(Bio::DB::Flat::BinarySearch) perl(Bio::DB::GFF) perl(Bio::DB::GFF::Adaptor::ace) perl(Bio::DB::GFF::Adaptor::berkeleydb) perl(Bio::DB::GFF::Adaptor::berkeleydb::iterator) perl(Bio::DB::GFF::Adaptor::biofetch) perl(Bio::DB::GFF::Adaptor::biofetch_oracle) perl(Bio::DB::GFF::Adaptor::dbi) perl(Bio::DB::GFF::Adaptor::dbi::caching_handle) perl(Bio::DB::GFF::Adaptor::dbi::faux_dbh) perl(Bio::DB::GFF::Adaptor::dbi::iterator) perl(Bio::DB::GFF::Adaptor::dbi::mysql) perl(Bio::DB::GFF::Adaptor::dbi::mysqlace) perl(Bio::DB::GFF::Adaptor::dbi::mysqlcmap) perl(Bio::DB::GFF::Adaptor::dbi::mysqlopt) perl(Bio::DB::GFF::Adaptor::dbi::oracle) perl(Bio::DB::GFF::Adaptor::dbi::oracleace) perl(Bio::DB::GFF::Adaptor::dbi::pg) perl(Bio::DB::GFF::Adaptor::dbi::pg_fts) perl(Bio::DB::GFF::Adaptor::memory) perl(Bio::DB::GFF::Adaptor::memory::feature_serializer) perl(Bio::DB::GFF::Adaptor::memory::iterator) perl(Bio::DB::GFF::Aggregator) perl(Bio::DB::GFF::Aggregator::alignment) perl(Bio::DB::GFF::Aggregator::clone) perl(Bio::DB::GFF::Aggregator::coding) perl(Bio::DB::GFF::Aggregator::gene) perl(Bio::DB::GFF::Aggregator::match) perl(Bio::DB::GFF::Aggregator::none) perl(Bio::DB::GFF::Aggregator::orf) perl(Bio::DB::GFF::Aggregator::processed_transcript) perl(Bio::DB::GFF::Aggregator::so_transcript) perl(Bio::DB::GFF::Aggregator::transcript) perl(Bio::DB::GFF::Aggregator::ucsc_acembly) perl(Bio::DB::GFF::Aggregator::ucsc_ensgene) perl(Bio::DB::GFF::Aggregator::ucsc_genscan) perl(Bio::DB::GFF::Aggregator::ucsc_refgene) perl(Bio::DB::GFF::Aggregator::ucsc_sanger22) perl(Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo) perl(Bio::DB::GFF::Aggregator::ucsc_softberry) perl(Bio::DB::GFF::Aggregator::ucsc_twinscan) perl(Bio::DB::GFF::Aggregator::ucsc_unigene) perl(Bio::DB::GFF::Featname) perl(Bio::DB::GFF::Feature) perl(Bio::DB::GFF::Homol) perl(Bio::DB::GFF::ID_Iterator) perl(Bio::DB::GFF::RelSegment) perl(Bio::DB::GFF::Segment) perl(Bio::DB::GFF::Typename) perl(Bio::DB::GFF::Util::Binning) perl(Bio::DB::GFF::Util::Rearrange) perl(Bio::DB::GenBank) perl(Bio::DB::GenPept) perl(Bio::DB::GenericWebAgent) perl(Bio::DB::HIV) perl(Bio::DB::HIV::HIVAnnotProcessor) perl(Bio::DB::HIV::HIVQueryHelper) perl(Bio::DB::InMemoryCache) perl(Bio::DB::LocationI) perl(Bio::DB::MeSH) perl(Bio::DB::NCBIHelper) perl(Bio::DB::Qual) perl(Bio::DB::Qual::Stream) perl(Bio::DB::Query::GenBank) perl(Bio::DB::Query::HIVQuery) perl(Bio::DB::Query::WebQuery) perl(Bio::DB::QueryI) perl(Bio::DB::RandomAccessI) perl(Bio::DB::RefSeq) perl(Bio::DB::ReferenceI) perl(Bio::DB::Registry) perl(Bio::DB::SeqFeature) perl(Bio::DB::SeqFeature::NormalizedFeature) perl(Bio::DB::SeqFeature::NormalizedFeatureI) perl(Bio::DB::SeqFeature::NormalizedTableFeatureI) perl(Bio::DB::SeqFeature::Segment) perl(Bio::DB::SeqFeature::Store) perl(Bio::DB::SeqFeature::Store::DBI::Iterator) perl(Bio::DB::SeqFeature::Store::DBI::mysql) perl(Bio::DB::SeqFeature::Store::FeatureFileLoader) perl(Bio::DB::SeqFeature::Store::GFF2Loader) perl(Bio::DB::SeqFeature::Store::GFF3Loader) perl(Bio::DB::SeqFeature::Store::LoadHelper) perl(Bio::DB::SeqFeature::Store::Loader) perl(Bio::DB::SeqFeature::Store::bdb) perl(Bio::DB::SeqFeature::Store::berkeleydb) perl(Bio::DB::SeqFeature::Store::berkeleydb::Iterator) perl(Bio::DB::SeqFeature::Store::memory) perl(Bio::DB::SeqFeature::Store::memory::Iterator) perl(Bio::DB::SeqHound) perl(Bio::DB::SeqI) perl(Bio::DB::SeqVersion) perl(Bio::DB::SeqVersion::gi) perl(Bio::DB::SwissProt) perl(Bio::DB::TFBS) perl(Bio::DB::TFBS::transfac_pro) perl(Bio::DB::Taxonomy) perl(Bio::DB::Taxonomy::entrez) perl(Bio::DB::Taxonomy::flatfile) perl(Bio::DB::Taxonomy::list) perl(Bio::DB::Universal) perl(Bio::DB::UpdateableSeqI) perl(Bio::DB::WebDBSeqI) perl(Bio::DBLinkContainerI) perl(Bio::Das::FeatureTypeI) perl(Bio::Das::SegmentI) perl(Bio::DasI) perl(Bio::DescribableI) perl(Bio::Event::EventGeneratorI) perl(Bio::Event::EventHandlerI) perl(Bio::Expression::Contact) perl(Bio::Expression::DataSet) perl(Bio::Expression::FeatureGroup) perl(Bio::Expression::FeatureGroup::FeatureGroupMas50) perl(Bio::Expression::FeatureI) perl(Bio::Expression::FeatureSet::FeatureSetMas50) perl(Bio::Expression::Platform) perl(Bio::Expression::ProbeI) perl(Bio::Expression::Sample) perl(Bio::Factory::AnalysisI) perl(Bio::Factory::ApplicationFactoryI) perl(Bio::Factory::DriverFactory) perl(Bio::Factory::FTLocationFactory) perl(Bio::Factory::LocationFactoryI) perl(Bio::Factory::MapFactoryI) perl(Bio::Factory::ObjectBuilderI) perl(Bio::Factory::ObjectFactory) perl(Bio::Factory::ObjectFactoryI) perl(Bio::Factory::SeqAnalysisParserFactory) perl(Bio::Factory::SeqAnalysisParserFactoryI) perl(Bio::Factory::SequenceFactoryI) perl(Bio::Factory::SequenceProcessorI) perl(Bio::Factory::SequenceStreamI) perl(Bio::Factory::TreeFactoryI) perl(Bio::FeatureHolderI) perl(Bio::FeatureIO) perl(Bio::FeatureIO::bed) perl(Bio::FeatureIO::gff) perl(Bio::FeatureIO::gtf) perl(Bio::FeatureIO::interpro) perl(Bio::FeatureIO::ptt) perl(Bio::FeatureIO::vecscreen_simple) perl(Bio::HandlerBaseI) perl(Bio::IdCollectionI) perl(Bio::IdentifiableI) perl(Bio::Index::Abstract) perl(Bio::Index::AbstractSeq) perl(Bio::Index::Blast) perl(Bio::Index::BlastTable) perl(Bio::Index::EMBL) perl(Bio::Index::Fasta) perl(Bio::Index::Fastq) perl(Bio::Index::GenBank) perl(Bio::Index::Hmmer) perl(Bio::Index::Qual) perl(Bio::Index::Stockholm) perl(Bio::Index::SwissPfam) perl(Bio::Index::Swissprot) perl(Bio::LiveSeq::AARange) perl(Bio::LiveSeq::Chain) perl(Bio::LiveSeq::ChainI) perl(Bio::LiveSeq::DNA) perl(Bio::LiveSeq::Exon) perl(Bio::LiveSeq::Gene) perl(Bio::LiveSeq::IO::BioPerl) perl(Bio::LiveSeq::IO::Loader) perl(Bio::LiveSeq::Intron) perl(Bio::LiveSeq::Mutation) perl(Bio::LiveSeq::Mutator) perl(Bio::LiveSeq::Prim_Transcript) perl(Bio::LiveSeq::Range) perl(Bio::LiveSeq::Repeat_Region) perl(Bio::LiveSeq::Repeat_Unit) perl(Bio::LiveSeq::SeqI) perl(Bio::LiveSeq::Transcript) perl(Bio::LiveSeq::Translation) perl(Bio::LocatableSeq) perl(Bio::Location::Atomic) perl(Bio::Location::AvWithinCoordPolicy) perl(Bio::Location::CoordinatePolicyI) perl(Bio::Location::Fuzzy) perl(Bio::Location::FuzzyLocationI) perl(Bio::Location::NarrowestCoordPolicy) perl(Bio::Location::Simple) perl(Bio::Location::Split) perl(Bio::Location::SplitLocationI) perl(Bio::Location::WidestCoordPolicy) perl(Bio::LocationI) perl(Bio::Map::Clone) perl(Bio::Map::Contig) perl(Bio::Map::CytoMap) perl(Bio::Map::CytoMarker) perl(Bio::Map::CytoPosition) perl(Bio::Map::EntityI) perl(Bio::Map::FPCMarker) perl(Bio::Map::Gene) perl(Bio::Map::GeneMap) perl(Bio::Map::GenePosition) perl(Bio::Map::GeneRelative) perl(Bio::Map::LinkageMap) perl(Bio::Map::LinkagePosition) perl(Bio::Map::MapI) perl(Bio::Map::Mappable) perl(Bio::Map::MappableI) perl(Bio::Map::Marker) perl(Bio::Map::MarkerI) perl(Bio::Map::Microsatellite) perl(Bio::Map::OrderedPosition) perl(Bio::Map::OrderedPositionWithDistance) perl(Bio::Map::Physical) perl(Bio::Map::Position) perl(Bio::Map::PositionHandler) perl(Bio::Map::PositionHandlerI) perl(Bio::Map::PositionI) perl(Bio::Map::PositionWithSequence) perl(Bio::Map::Prediction) perl(Bio::Map::Relative) perl(Bio::Map::RelativeI) perl(Bio::Map::SimpleMap) perl(Bio::Map::TranscriptionFactor) perl(Bio::MapIO) perl(Bio::MapIO::fpc) perl(Bio::MapIO::mapmaker) perl(Bio::Matrix::Generic) perl(Bio::Matrix::IO) perl(Bio::Matrix::IO::mlagan) perl(Bio::Matrix::IO::phylip) perl(Bio::Matrix::IO::scoring) perl(Bio::Matrix::MatrixI) perl(Bio::Matrix::Mlagan) perl(Bio::Matrix::PSM::IO) perl(Bio::Matrix::PSM::IO::mast) perl(Bio::Matrix::PSM::IO::masta) perl(Bio::Matrix::PSM::IO::meme) perl(Bio::Matrix::PSM::IO::psiblast) perl(Bio::Matrix::PSM::IO::transfac) perl(Bio::Matrix::PSM::InstanceSite) perl(Bio::Matrix::PSM::InstanceSiteI) perl(Bio::Matrix::PSM::ProtMatrix) perl(Bio::Matrix::PSM::ProtPsm) perl(Bio::Matrix::PSM::Psm) perl(Bio::Matrix::PSM::PsmHeader) perl(Bio::Matrix::PSM::PsmHeaderI) perl(Bio::Matrix::PSM::PsmI) perl(Bio::Matrix::PSM::SiteMatrix) perl(Bio::Matrix::PSM::SiteMatrixI) perl(Bio::Matrix::PhylipDist) perl(Bio::Matrix::Scoring) perl(Bio::MolEvol::CodonModel) perl(Bio::Ontology::DocumentRegistry) perl(Bio::Ontology::GOterm) perl(Bio::Ontology::InterProTerm) perl(Bio::Ontology::OBOEngine) perl(Bio::Ontology::OBOterm) perl(Bio::Ontology::Ontology) perl(Bio::Ontology::OntologyEngineI) perl(Bio::Ontology::OntologyI) perl(Bio::Ontology::OntologyStore) perl(Bio::Ontology::Path) perl(Bio::Ontology::PathI) perl(Bio::Ontology::Relationship) perl(Bio::Ontology::RelationshipFactory) perl(Bio::Ontology::RelationshipI) perl(Bio::Ontology::RelationshipType) perl(Bio::Ontology::SimpleGOEngine::GraphAdaptor) perl(Bio::Ontology::SimpleGOEngine::GraphAdaptor02) perl(Bio::Ontology::SimpleOntologyEngine) perl(Bio::Ontology::Term) perl(Bio::Ontology::TermFactory) perl(Bio::Ontology::TermI) perl(Bio::OntologyIO) perl(Bio::OntologyIO::Handlers::BaseSAXHandler) perl(Bio::OntologyIO::Handlers::InterProHandler) perl(Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler) perl(Bio::OntologyIO::InterProParser) perl(Bio::OntologyIO::dagflat) perl(Bio::OntologyIO::goflat) perl(Bio::OntologyIO::obo) perl(Bio::OntologyIO::simplehierarchy) perl(Bio::OntologyIO::soflat) perl(Bio::ParameterBaseI) perl(Bio::Perl) perl(Bio::Phenotype::Correlate) perl(Bio::Phenotype::MeSH::Term) perl(Bio::Phenotype::MeSH::Twig) perl(Bio::Phenotype::Measure) perl(Bio::Phenotype::OMIM::MiniMIMentry) perl(Bio::Phenotype::OMIM::OMIMentry) perl(Bio::Phenotype::OMIM::OMIMentryAllelicVariant) perl(Bio::Phenotype::OMIM::OMIMparser) perl(Bio::Phenotype::Phenotype) perl(Bio::Phenotype::PhenotypeI) perl(Bio::PopGen::Genotype) perl(Bio::PopGen::GenotypeI) perl(Bio::PopGen::HtSNP) perl(Bio::PopGen::IO) perl(Bio::PopGen::IO::csv) perl(Bio::PopGen::IO::hapmap) perl(Bio::PopGen::IO::phase) perl(Bio::PopGen::IO::prettybase) perl(Bio::PopGen::Individual) perl(Bio::PopGen::IndividualI) perl(Bio::PopGen::Marker) perl(Bio::PopGen::MarkerI) perl(Bio::PopGen::PopStats) perl(Bio::PopGen::Population) perl(Bio::PopGen::PopulationI) perl(Bio::PopGen::Simulation::Coalescent) perl(Bio::PopGen::Simulation::GeneticDrift) perl(Bio::PopGen::Statistics) perl(Bio::PopGen::TagHaplotype) perl(Bio::PopGen::Utilities) perl(Bio::PrimarySeq) perl(Bio::PrimarySeq::Fasta) perl(Bio::PrimarySeqI) perl(Bio::PullParserI) perl(Bio::Range) perl(Bio::RangeI) perl(Bio::Restriction::Analysis) perl(Bio::Restriction::Enzyme) perl(Bio::Restriction::Enzyme::MultiCut) perl(Bio::Restriction::Enzyme::MultiSite) perl(Bio::Restriction::EnzymeCollection) perl(Bio::Restriction::EnzymeI) perl(Bio::Restriction::IO) perl(Bio::Restriction::IO::bairoch) perl(Bio::Restriction::IO::base) perl(Bio::Restriction::IO::itype2) perl(Bio::Restriction::IO::prototype) perl(Bio::Restriction::IO::withrefm) perl(Bio::Root::Build) = 1.006000 perl(Bio::Root::Exception) perl(Bio::Root::HTTPget) perl(Bio::Root::IO) perl(Bio::Root::Root) perl(Bio::Root::RootI) perl(Bio::Root::Storable) perl(Bio::Root::Test) perl(Bio::Root::Test::Warn) perl(Bio::Root::Utilities) perl(Bio::Root::Version) = 1.006000 perl(Bio::Search::BlastStatistics) perl(Bio::Search::BlastUtils) perl(Bio::Search::DatabaseI) perl(Bio::Search::GenericDatabase) perl(Bio::Search::GenericStatistics) perl(Bio::Search::HSP::BlastHSP) perl(Bio::Search::HSP::BlastPullHSP) perl(Bio::Search::HSP::FastaHSP) perl(Bio::Search::HSP::GenericHSP) perl(Bio::Search::HSP::HMMERHSP) perl(Bio::Search::HSP::HSPFactory) perl(Bio::Search::HSP::HSPI) perl(Bio::Search::HSP::HmmpfamHSP) perl(Bio::Search::HSP::ModelHSP) perl(Bio::Search::HSP::PSLHSP) perl(Bio::Search::HSP::PsiBlastHSP) perl(Bio::Search::HSP::PullHSPI) perl(Bio::Search::HSP::WABAHSP) perl(Bio::Search::Hit::BlastHit) perl(Bio::Search::Hit::BlastPullHit) perl(Bio::Search::Hit::Fasta) perl(Bio::Search::Hit::GenericHit) perl(Bio::Search::Hit::HMMERHit) perl(Bio::Search::Hit::HitFactory) perl(Bio::Search::Hit::HitI) perl(Bio::Search::Hit::HmmpfamHit) perl(Bio::Search::Hit::ModelHit) perl(Bio::Search::Hit::PsiBlastHit) perl(Bio::Search::Hit::PullHitI) perl(Bio::Search::Iteration::GenericIteration) perl(Bio::Search::Iteration::IterationI) perl(Bio::Search::Processor) perl(Bio::Search::Result::BlastPullResult) perl(Bio::Search::Result::BlastResult) perl(Bio::Search::Result::CrossMatchResult) perl(Bio::Search::Result::GenericResult) perl(Bio::Search::Result::HMMERResult) perl(Bio::Search::Result::HmmpfamResult) perl(Bio::Search::Result::PullResultI) perl(Bio::Search::Result::ResultFactory) perl(Bio::Search::Result::ResultI) perl(Bio::Search::Result::WABAResult) perl(Bio::Search::SearchUtils) perl(Bio::Search::StatisticsI) perl(Bio::SearchDist) perl(Bio::SearchIO) perl(Bio::SearchIO::EventHandlerI) perl(Bio::SearchIO::FastHitEventBuilder) perl(Bio::SearchIO::IteratedSearchResultEventBuilder) perl(Bio::SearchIO::SearchResultEventBuilder) perl(Bio::SearchIO::SearchWriterI) perl(Bio::SearchIO::Writer::BSMLResultWriter) perl(Bio::SearchIO::Writer::GbrowseGFF) perl(Bio::SearchIO::Writer::HSPTableWriter) perl(Bio::SearchIO::Writer::HTMLResultWriter) perl(Bio::SearchIO::Writer::HitTableWriter) perl(Bio::SearchIO::Writer::ResultTableWriter) perl(Bio::SearchIO::Writer::TextResultWriter) perl(Bio::SearchIO::XML::BlastHandler) perl(Bio::SearchIO::XML::PsiBlastHandler) perl(Bio::SearchIO::axt) perl(Bio::SearchIO::blast) perl(Bio::SearchIO::blast_pull) perl(Bio::SearchIO::blasttable) perl(Bio::SearchIO::blastxml) perl(Bio::SearchIO::cross_match) perl(Bio::SearchIO::erpin) perl(Bio::SearchIO::exonerate) perl(Bio::SearchIO::fasta) perl(Bio::SearchIO::hmmer) perl(Bio::SearchIO::hmmer_pull) perl(Bio::SearchIO::infernal) perl(Bio::SearchIO::megablast) perl(Bio::SearchIO::psl) perl(Bio::SearchIO::rnamotif) perl(Bio::SearchIO::sim4) perl(Bio::SearchIO::waba) perl(Bio::SearchIO::wise) perl(Bio::Seq) perl(Bio::Seq::BaseSeqProcessor) perl(Bio::Seq::EncodedSeq) perl(Bio::Seq::LargeLocatableSeq) perl(Bio::Seq::LargePrimarySeq) perl(Bio::Seq::LargeSeq) perl(Bio::Seq::LargeSeqI) perl(Bio::Seq::Meta) perl(Bio::Seq::Meta::Array) perl(Bio::Seq::MetaI) perl(Bio::Seq::PrimaryQual) perl(Bio::Seq::PrimaryQual::Qual) perl(Bio::Seq::PrimedSeq) perl(Bio::Seq::QualI) perl(Bio::Seq::Quality) perl(Bio::Seq::RichSeq) perl(Bio::Seq::RichSeqI) perl(Bio::Seq::SeqBuilder) perl(Bio::Seq::SeqFactory) perl(Bio::Seq::SeqFastaSpeedFactory) perl(Bio::Seq::SeqWithQuality) perl(Bio::Seq::SequenceTrace) perl(Bio::Seq::TraceI) perl(Bio::SeqAnalysisParserI) perl(Bio::SeqEvolution::DNAPoint) perl(Bio::SeqEvolution::EvolutionI) perl(Bio::SeqEvolution::Factory) perl(Bio::SeqFeature::Annotated) perl(Bio::SeqFeature::AnnotationAdaptor) perl(Bio::SeqFeature::Collection) perl(Bio::SeqFeature::CollectionI) perl(Bio::SeqFeature::Computation) perl(Bio::SeqFeature::FeaturePair) perl(Bio::SeqFeature::Gene::Exon) perl(Bio::SeqFeature::Gene::ExonI) perl(Bio::SeqFeature::Gene::GeneStructure) perl(Bio::SeqFeature::Gene::GeneStructureI) perl(Bio::SeqFeature::Gene::Intron) perl(Bio::SeqFeature::Gene::NC_Feature) perl(Bio::SeqFeature::Gene::Poly_A_site) perl(Bio::SeqFeature::Gene::Promoter) perl(Bio::SeqFeature::Gene::Transcript) perl(Bio::SeqFeature::Gene::TranscriptI) perl(Bio::SeqFeature::Gene::UTR) perl(Bio::SeqFeature::Generic) perl(Bio::SeqFeature::Lite) perl(Bio::SeqFeature::PositionProxy) perl(Bio::SeqFeature::Primer) perl(Bio::SeqFeature::SiRNA::Oligo) perl(Bio::SeqFeature::SiRNA::Pair) perl(Bio::SeqFeature::Similarity) perl(Bio::SeqFeature::SimilarityPair) perl(Bio::SeqFeature::Tools::FeatureNamer) perl(Bio::SeqFeature::Tools::IDHandler) perl(Bio::SeqFeature::Tools::TypeMapper) perl(Bio::SeqFeature::Tools::Unflattener) perl(Bio::SeqFeature::TypedSeqFeatureI) perl(Bio::SeqFeatureI) perl(Bio::SeqI) perl(Bio::SeqIO) perl(Bio::SeqIO::FTHelper) perl(Bio::SeqIO::Handler::GenericRichSeqHandler) perl(Bio::SeqIO::MultiFile) perl(Bio::SeqIO::abi) perl(Bio::SeqIO::ace) perl(Bio::SeqIO::agave) perl(Bio::SeqIO::alf) perl(Bio::SeqIO::asciitree) perl(Bio::SeqIO::bsml) perl(Bio::SeqIO::bsml_sax) perl(Bio::SeqIO::chadoxml) perl(Bio::SeqIO::chaos) perl(Bio::SeqIO::chaosxml) perl(Bio::SeqIO::ctf) perl(Bio::SeqIO::embl) perl(Bio::SeqIO::embldriver) perl(Bio::SeqIO::entrezgene) perl(Bio::SeqIO::excel) perl(Bio::SeqIO::exp) perl(Bio::SeqIO::fasta) perl(Bio::SeqIO::fastq) perl(Bio::SeqIO::flybase_chadoxml) perl(Bio::SeqIO::game) perl(Bio::SeqIO::game::featHandler) perl(Bio::SeqIO::game::gameHandler) perl(Bio::SeqIO::game::gameSubs) perl(Bio::SeqIO::game::gameWriter) perl(Bio::SeqIO::game::seqHandler) perl(Bio::SeqIO::gbdriver) perl(Bio::SeqIO::gcg) perl(Bio::SeqIO::genbank) perl(Bio::SeqIO::interpro) perl(Bio::SeqIO::kegg) perl(Bio::SeqIO::largefasta) perl(Bio::SeqIO::lasergene) perl(Bio::SeqIO::locuslink) perl(Bio::SeqIO::metafasta) perl(Bio::SeqIO::phd) perl(Bio::SeqIO::pir) perl(Bio::SeqIO::pln) perl(Bio::SeqIO::qual) perl(Bio::SeqIO::raw) perl(Bio::SeqIO::scf) perl(Bio::SeqIO::strider) perl(Bio::SeqIO::swiss) perl(Bio::SeqIO::swissdriver) perl(Bio::SeqIO::tab) perl(Bio::SeqIO::table) perl(Bio::SeqIO::tigr) perl(Bio::SeqIO::tigrxml) perl(Bio::SeqIO::tinyseq) perl(Bio::SeqIO::tinyseq::tinyseqHandler) perl(Bio::SeqIO::ztr) perl(Bio::SeqUtils) perl(Bio::SimpleAlign) perl(Bio::SimpleAnalysisI) perl(Bio::Species) perl(Bio::Structure::Atom) perl(Bio::Structure::Chain) perl(Bio::Structure::Entry) perl(Bio::Structure::IO) perl(Bio::Structure::IO::pdb) perl(Bio::Structure::Model) perl(Bio::Structure::Residue) perl(Bio::Structure::SecStr::DSSP::Res) perl(Bio::Structure::SecStr::STRIDE::Res) perl(Bio::Structure::StructureI) perl(Bio::Symbol::Alphabet) perl(Bio::Symbol::AlphabetI) perl(Bio::Symbol::DNAAlphabet) perl(Bio::Symbol::ProteinAlphabet) perl(Bio::Symbol::Symbol) perl(Bio::Symbol::SymbolI) perl(Bio::Taxon) perl(Bio::Taxonomy) perl(Bio::Taxonomy::FactoryI) perl(Bio::Taxonomy::Node) perl(Bio::Taxonomy::Taxon) perl(Bio::Taxonomy::Tree) perl(Bio::Tools::AlignFactory) perl(Bio::Tools::Alignment::Consed) perl(Bio::Tools::Alignment::Trim) perl(Bio::Tools::Analysis::DNA::ESEfinder) perl(Bio::Tools::Analysis::Protein::Domcut) perl(Bio::Tools::Analysis::Protein::ELM) perl(Bio::Tools::Analysis::Protein::GOR4) perl(Bio::Tools::Analysis::Protein::HNN) perl(Bio::Tools::Analysis::Protein::Mitoprot) perl(Bio::Tools::Analysis::Protein::NetPhos) perl(Bio::Tools::Analysis::Protein::Scansite) perl(Bio::Tools::Analysis::Protein::Sopma) perl(Bio::Tools::Analysis::SimpleAnalysisBase) perl(Bio::Tools::AnalysisResult) perl(Bio::Tools::Blat) perl(Bio::Tools::CodonTable) perl(Bio::Tools::Coil) perl(Bio::Tools::ECnumber) perl(Bio::Tools::EMBOSS::Palindrome) perl(Bio::Tools::EPCR) perl(Bio::Tools::ERPIN) perl(Bio::Tools::ESTScan) perl(Bio::Tools::EUtilities) perl(Bio::Tools::EUtilities::EUtilDataI) perl(Bio::Tools::EUtilities::EUtilParameters) perl(Bio::Tools::EUtilities::History) perl(Bio::Tools::EUtilities::HistoryI) perl(Bio::Tools::EUtilities::Info) perl(Bio::Tools::EUtilities::Info::FieldInfo) perl(Bio::Tools::EUtilities::Info::LinkInfo) perl(Bio::Tools::EUtilities::Link) perl(Bio::Tools::EUtilities::Link::LinkSet) perl(Bio::Tools::EUtilities::Link::UrlLink) perl(Bio::Tools::EUtilities::Query) perl(Bio::Tools::EUtilities::Query::GlobalQuery) perl(Bio::Tools::EUtilities::Summary) perl(Bio::Tools::EUtilities::Summary::DocSum) perl(Bio::Tools::EUtilities::Summary::Item) perl(Bio::Tools::Eponine) perl(Bio::Tools::Est2Genome) perl(Bio::Tools::Fgenesh) perl(Bio::Tools::FootPrinter) perl(Bio::Tools::GFF) perl(Bio::Tools::Gel) perl(Bio::Tools::Geneid) perl(Bio::Tools::Genemark) perl(Bio::Tools::Genewise) perl(Bio::Tools::Genomewise) perl(Bio::Tools::Genscan) perl(Bio::Tools::Glimmer) perl(Bio::Tools::Grail) perl(Bio::Tools::GuessSeqFormat) perl(Bio::Tools::HMM) perl(Bio::Tools::HMMER::Domain) perl(Bio::Tools::HMMER::Results) perl(Bio::Tools::HMMER::Set) perl(Bio::Tools::Hmmpfam) perl(Bio::Tools::IUPAC) perl(Bio::Tools::Infernal) perl(Bio::Tools::Lucy) perl(Bio::Tools::MZEF) perl(Bio::Tools::Match) perl(Bio::Tools::OddCodes) perl(Bio::Tools::Phylo::Gerp) perl(Bio::Tools::Phylo::Gumby) perl(Bio::Tools::Phylo::Molphy) perl(Bio::Tools::Phylo::Molphy::Result) perl(Bio::Tools::Phylo::PAML) perl(Bio::Tools::Phylo::PAML::ModelResult) perl(Bio::Tools::Phylo::PAML::Result) perl(Bio::Tools::Phylo::Phylip::ProtDist) perl(Bio::Tools::Prediction::Exon) perl(Bio::Tools::Prediction::Gene) perl(Bio::Tools::Primer3) perl(Bio::Tools::Primer::Assessor::Base) perl(Bio::Tools::Primer::AssessorI) perl(Bio::Tools::Primer::Feature) perl(Bio::Tools::Primer::Pair) perl(Bio::Tools::Prints) perl(Bio::Tools::Profile) perl(Bio::Tools::Promoterwise) perl(Bio::Tools::PrositeScan) perl(Bio::Tools::Protparam) perl(Bio::Tools::Pseudowise) perl(Bio::Tools::QRNA) perl(Bio::Tools::RNAMotif) perl(Bio::Tools::RandomDistFunctions) perl(Bio::Tools::RepeatMasker) perl(Bio::Tools::Run::GenericParameters) perl(Bio::Tools::Run::ParametersI) perl(Bio::Tools::Run::RemoteBlast) perl(Bio::Tools::Run::StandAloneBlast) perl(Bio::Tools::Run::StandAloneNCBIBlast) perl(Bio::Tools::Run::StandAloneWUBlast) perl(Bio::Tools::Run::WrapperBase) perl(Bio::Tools::Seg) perl(Bio::Tools::SeqPattern) perl(Bio::Tools::SeqStats) perl(Bio::Tools::SeqWords) perl(Bio::Tools::SiRNA) perl(Bio::Tools::SiRNA::Ruleset::saigo) perl(Bio::Tools::SiRNA::Ruleset::tuschl) perl(Bio::Tools::Sigcleave) perl(Bio::Tools::Signalp) perl(Bio::Tools::Signalp::ExtendedSignalp) perl(Bio::Tools::Sim4::Exon) perl(Bio::Tools::Sim4::Results) perl(Bio::Tools::Spidey::Exon) perl(Bio::Tools::Spidey::Results) perl(Bio::Tools::TandemRepeatsFinder) perl(Bio::Tools::TargetP) perl(Bio::Tools::Tmhmm) perl(Bio::Tools::dpAlign) perl(Bio::Tools::ipcress) perl(Bio::Tools::isPcr) perl(Bio::Tools::pICalculator) perl(Bio::Tools::pSW) perl(Bio::Tools::tRNAscanSE) perl(Bio::Tree::AlleleNode) perl(Bio::Tree::AnnotatableNode) perl(Bio::Tree::Compatible) perl(Bio::Tree::DistanceFactory) perl(Bio::Tree::Draw::Cladogram) perl(Bio::Tree::Node) perl(Bio::Tree::NodeI) perl(Bio::Tree::NodeNHX) perl(Bio::Tree::RandomFactory) perl(Bio::Tree::Statistics) perl(Bio::Tree::Tree) perl(Bio::Tree::TreeFunctionsI) perl(Bio::Tree::TreeI) perl(Bio::TreeIO) perl(Bio::TreeIO::TreeEventBuilder) perl(Bio::TreeIO::cluster) perl(Bio::TreeIO::lintree) perl(Bio::TreeIO::newick) perl(Bio::TreeIO::nexus) perl(Bio::TreeIO::nhx) perl(Bio::TreeIO::pag) perl(Bio::TreeIO::phyloxml) perl(Bio::TreeIO::svggraph) perl(Bio::TreeIO::tabtree) perl(Bio::UpdateableSeqI) perl(Bio::Variation::AAChange) perl(Bio::Variation::AAReverseMutate) perl(Bio::Variation::Allele) perl(Bio::Variation::DNAMutation) perl(Bio::Variation::IO) perl(Bio::Variation::IO::flat) perl(Bio::Variation::IO::xml) perl(Bio::Variation::RNAChange) perl(Bio::Variation::SNP) perl(Bio::Variation::SeqDiff) perl(Bio::Variation::VariantI) perl(Bio::WebAgent) perl(FeatureStore) perl(HIVSchema) perl(Q) perl(QRY) perl(R) perl(TestInterface) perl(TestObject) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(VersionedDependencies) <= 3.0.3-1 Requires: /usr/bin/env /usr/bin/perl perl(Ace) perl(AnyDBM_File) perl(Bio::ASN1::EntrezGene) perl(Bio::Align::DNAStatistics) perl(Bio::Align::PairwiseStatistics) perl(Bio::Align::Utilities) perl(Bio::AlignIO) perl(Bio::AlignIO::Handler::GenericAlignHandler) perl(Bio::Annotation::AnnotationFactory) perl(Bio::Annotation::Collection) perl(Bio::Annotation::Comment) perl(Bio::Annotation::DBLink) perl(Bio::Annotation::OntologyTerm) perl(Bio::Annotation::Reference) perl(Bio::Annotation::Relation) perl(Bio::Annotation::SimpleValue) perl(Bio::Annotation::TagTree) perl(Bio::Annotation::Target) perl(Bio::Annotation::TypeManager) perl(Bio::Assembly::Contig) perl(Bio::Assembly::IO) perl(Bio::Assembly::Scaffold) perl(Bio::Assembly::Singlet) perl(Bio::Biblio) perl(Bio::Biblio::IO) perl(Bio::Biblio::MedlineBook) perl(Bio::Biblio::MedlineJournal) perl(Bio::Biblio::Organisation) perl(Bio::Biblio::Person) perl(Bio::Biblio::Provider) perl(Bio::Cluster::ClusterFactory) perl(Bio::Cluster::SequenceFamily) perl(Bio::Cluster::UniGene) perl(Bio::CodonUsage::IO) perl(Bio::CodonUsage::Table) perl(Bio::Coordinate::Collection) perl(Bio::Coordinate::ExtrapolatingPair) perl(Bio::Coordinate::Graph) perl(Bio::Coordinate::Pair) perl(Bio::Coordinate::Result) perl(Bio::Coordinate::Result::Gap) perl(Bio::Coordinate::Result::Match) perl(Bio::DB::BioFetch) perl(Bio::DB::EMBL) perl(Bio::DB::Failover) perl(Bio::DB::Fasta) perl(Bio::DB::Flat) perl(Bio::DB::GFF) perl(Bio::DB::GFF::Adaptor::berkeleydb::iterator) perl(Bio::DB::GFF::Adaptor::biofetch) perl(Bio::DB::GFF::Adaptor::dbi) perl(Bio::DB::GFF::Adaptor::dbi::caching_handle) perl(Bio::DB::GFF::Adaptor::dbi::iterator) perl(Bio::DB::GFF::Adaptor::dbi::mysql) perl(Bio::DB::GFF::Adaptor::dbi::mysqlcmap) perl(Bio::DB::GFF::Adaptor::dbi::mysqlopt) perl(Bio::DB::GFF::Adaptor::dbi::pg) perl(Bio::DB::GFF::Adaptor::memory::feature_serializer) perl(Bio::DB::GFF::Adaptor::memory::iterator) perl(Bio::DB::GFF::Aggregator) perl(Bio::DB::GFF::Featname) perl(Bio::DB::GFF::Feature) perl(Bio::DB::GFF::Homol) perl(Bio::DB::GFF::RelSegment) perl(Bio::DB::GFF::Typename) perl(Bio::DB::GFF::Util::Binning) perl(Bio::DB::GFF::Util::Rearrange) perl(Bio::DB::GenBank) perl(Bio::DB::GenPept) perl(Bio::DB::HIV::HIVAnnotProcessor) perl(Bio::DB::HIV::HIVQueryHelper) perl(Bio::DB::Query::GenBank) perl(Bio::DB::RandomAccessI) perl(Bio::DB::RefSeq) perl(Bio::DB::Registry) perl(Bio::DB::SeqFeature) perl(Bio::DB::SeqFeature::Segment) perl(Bio::DB::SeqFeature::Store) perl(Bio::DB::SeqFeature::Store::DBI::Iterator) perl(Bio::DB::SeqFeature::Store::GFF3Loader) perl(Bio::DB::SeqFeature::Store::LoadHelper) perl(Bio::DB::SwissProt) perl(Bio::DB::Taxonomy) perl(Bio::Das::SegmentI) perl(Bio::Event::EventGeneratorI) perl(Bio::Expression::Contact) perl(Bio::Expression::DataSet) perl(Bio::Expression::Platform) perl(Bio::Expression::Sample) perl(Bio::Factory::FTLocationFactory) perl(Bio::Factory::ObjectFactory) perl(Bio::Factory::SequenceStreamI) perl(Bio::FeatureIO) perl(Bio::LiveSeq::AARange) perl(Bio::LiveSeq::Chain) perl(Bio::LiveSeq::DNA) perl(Bio::LiveSeq::Exon) perl(Bio::LiveSeq::Gene) perl(Bio::LiveSeq::Intron) perl(Bio::LiveSeq::Mutation) perl(Bio::LiveSeq::Prim_Transcript) perl(Bio::LiveSeq::Repeat_Region) perl(Bio::LiveSeq::Repeat_Unit) perl(Bio::LiveSeq::SeqI) perl(Bio::LiveSeq::Transcript) perl(Bio::LiveSeq::Translation) perl(Bio::LocatableSeq) perl(Bio::Location::Atomic) perl(Bio::Location::Fuzzy) perl(Bio::Location::Simple) perl(Bio::Location::Split) perl(Bio::Location::SplitLocationI) perl(Bio::Location::WidestCoordPolicy) perl(Bio::LocationI) perl(Bio::Map::Clone) perl(Bio::Map::Contig) perl(Bio::Map::CytoPosition) perl(Bio::Map::FPCMarker) perl(Bio::Map::Gene) perl(Bio::Map::GeneMap) perl(Bio::Map::GenePosition) perl(Bio::Map::GeneRelative) perl(Bio::Map::LinkagePosition) perl(Bio::Map::Mappable) perl(Bio::Map::Marker) perl(Bio::Map::Physical) perl(Bio::Map::Position) perl(Bio::Map::PositionHandler) perl(Bio::Map::Relative) perl(Bio::Map::SimpleMap) perl(Bio::Map::TranscriptionFactor) perl(Bio::Matrix::Mlagan) perl(Bio::Matrix::PSM::IO) perl(Bio::Matrix::PSM::InstanceSite) perl(Bio::Matrix::PSM::ProtMatrix) perl(Bio::Matrix::PSM::Psm) perl(Bio::Matrix::PSM::SiteMatrix) perl(Bio::Matrix::PhylipDist) perl(Bio::Matrix::Scoring) perl(Bio::MolEvol::CodonModel) perl(Bio::Ontology::DocumentRegistry) perl(Bio::Ontology::OBOEngine) perl(Bio::Ontology::Ontology) perl(Bio::Ontology::OntologyStore) perl(Bio::Ontology::Relationship) perl(Bio::Ontology::RelationshipFactory) perl(Bio::Ontology::RelationshipType) perl(Bio::Ontology::SimpleGOEngine::GraphAdaptor) perl(Bio::Ontology::SimpleGOEngine::GraphAdaptor02) perl(Bio::Ontology::SimpleOntologyEngine) perl(Bio::Ontology::Term) perl(Bio::Ontology::TermFactory) perl(Bio::Ontology::TermI) perl(Bio::OntologyIO) perl(Bio::OntologyIO::Handlers::InterProHandler) perl(Bio::Phenotype::Correlate) perl(Bio::Phenotype::MeSH::Term) perl(Bio::Phenotype::MeSH::Twig) perl(Bio::Phenotype::Measure) perl(Bio::Phenotype::OMIM::MiniMIMentry) perl(Bio::Phenotype::OMIM::OMIMentry) perl(Bio::Phenotype::OMIM::OMIMentryAllelicVariant) perl(Bio::PopGen::Genotype) perl(Bio::PopGen::IO) perl(Bio::PopGen::Individual) perl(Bio::PopGen::Marker) perl(Bio::PopGen::Population) perl(Bio::PopGen::Simulation::Coalescent) perl(Bio::PopGen::Statistics) perl(Bio::PrimarySeq) perl(Bio::PrimarySeqI) perl(Bio::Range) perl(Bio::RangeI) perl(Bio::Restriction::Enzyme) perl(Bio::Restriction::Enzyme::MultiCut) perl(Bio::Restriction::Enzyme::MultiSite) perl(Bio::Restriction::EnzymeCollection) perl(Bio::Restriction::IO) perl(Bio::Root::Exception) perl(Bio::Root::HTTPget) perl(Bio::Root::IO) perl(Bio::Root::Root) perl(Bio::Root::RootI) perl(Bio::Root::Version) perl(Bio::Search::BlastStatistics) perl(Bio::Search::BlastUtils) perl(Bio::Search::GenericStatistics) perl(Bio::Search::HSP::BlastPullHSP) perl(Bio::Search::HSP::GenericHSP) perl(Bio::Search::HSP::HSPFactory) perl(Bio::Search::HSP::HmmpfamHSP) perl(Bio::Search::Hit::BlastPullHit) perl(Bio::Search::Hit::GenericHit) perl(Bio::Search::Hit::HitFactory) perl(Bio::Search::Hit::HmmpfamHit) perl(Bio::Search::Result::BlastPullResult) perl(Bio::Search::Result::CrossMatchResult) perl(Bio::Search::Result::GenericResult) perl(Bio::Search::Result::HmmpfamResult) perl(Bio::Search::Result::ResultFactory) perl(Bio::Search::SearchUtils) perl(Bio::SearchIO) perl(Bio::SearchIO::FastHitEventBuilder) perl(Bio::SearchIO::IteratedSearchResultEventBuilder) perl(Bio::SearchIO::SearchResultEventBuilder) perl(Bio::SearchIO::XML::BlastHandler) perl(Bio::Seq) perl(Bio::Seq::LargeLocatableSeq) perl(Bio::Seq::LargePrimarySeq) perl(Bio::Seq::Meta) perl(Bio::Seq::Meta::Array) perl(Bio::Seq::PrimaryQual) perl(Bio::Seq::PrimedSeq) perl(Bio::Seq::QualI) perl(Bio::Seq::Quality) perl(Bio::Seq::RichSeq) perl(Bio::Seq::SeqBuilder) perl(Bio::Seq::SeqFactory) perl(Bio::Seq::SeqFastaSpeedFactory) perl(Bio::Seq::SequenceTrace) perl(Bio::SeqEvolution::EvolutionI) perl(Bio::SeqEvolution::Factory) perl(Bio::SeqFeature::Annotated) perl(Bio::SeqFeature::AnnotationAdaptor) perl(Bio::SeqFeature::Collection) perl(Bio::SeqFeature::FeaturePair) perl(Bio::SeqFeature::Gene::Exon) perl(Bio::SeqFeature::Gene::GeneStructure) perl(Bio::SeqFeature::Gene::Intron) perl(Bio::SeqFeature::Gene::Transcript) perl(Bio::SeqFeature::Generic) perl(Bio::SeqFeature::Lite) perl(Bio::SeqFeature::Primer) perl(Bio::SeqFeature::SiRNA::Oligo) perl(Bio::SeqFeature::SiRNA::Pair) perl(Bio::SeqFeature::Similarity) perl(Bio::SeqFeature::SimilarityPair) perl(Bio::SeqFeature::Tools::FeatureNamer) perl(Bio::SeqFeature::Tools::IDHandler) perl(Bio::SeqFeature::Tools::TypeMapper) perl(Bio::SeqFeature::Tools::Unflattener) perl(Bio::SeqFeatureI) perl(Bio::SeqIO) perl(Bio::SeqIO::FTHelper) perl(Bio::SeqIO::Handler::GenericRichSeqHandler) perl(Bio::SeqIO::MultiFile) perl(Bio::SeqIO::game::featHandler) perl(Bio::SeqIO::game::gameHandler) perl(Bio::SeqIO::game::gameWriter) perl(Bio::SeqIO::game::seqHandler) perl(Bio::SeqIO::gcg) perl(Bio::SeqIO::tinyseq::tinyseqHandler) perl(Bio::SeqUtils) perl(Bio::SimpleAlign) perl(Bio::Species) perl(Bio::Structure::Atom) perl(Bio::Structure::Chain) perl(Bio::Structure::Entry) perl(Bio::Structure::Model) perl(Bio::Structure::Residue) perl(Bio::Symbol::Alphabet) perl(Bio::Symbol::Symbol) perl(Bio::Taxon) perl(Bio::Taxonomy::Taxon) perl(Bio::Tools::Alignment::Trim) perl(Bio::Tools::AnalysisResult) perl(Bio::Tools::CodonTable) perl(Bio::Tools::EUtilities) perl(Bio::Tools::EUtilities::EUtilParameters) perl(Bio::Tools::EUtilities::History) perl(Bio::Tools::EUtilities::Info::FieldInfo) perl(Bio::Tools::EUtilities::Info::LinkInfo) perl(Bio::Tools::EUtilities::Link::LinkSet) perl(Bio::Tools::EUtilities::Link::UrlLink) perl(Bio::Tools::EUtilities::Query::GlobalQuery) perl(Bio::Tools::EUtilities::Summary::DocSum) perl(Bio::Tools::EUtilities::Summary::Item) perl(Bio::Tools::GFF) perl(Bio::Tools::Genewise) perl(Bio::Tools::Genomewise) perl(Bio::Tools::GuessSeqFormat) perl(Bio::Tools::HMMER::Domain) perl(Bio::Tools::HMMER::Set) perl(Bio::Tools::IUPAC) perl(Bio::Tools::Phylo::Molphy::Result) perl(Bio::Tools::Phylo::PAML::ModelResult) perl(Bio::Tools::Phylo::PAML::Result) perl(Bio::Tools::Prediction::Exon) perl(Bio::Tools::Prediction::Gene) perl(Bio::Tools::RandomDistFunctions) perl(Bio::Tools::Run::Alignment::Clustalw) perl(Bio::Tools::Run::GenericParameters) perl(Bio::Tools::Run::Phylo::Molphy::ProtML) perl(Bio::Tools::Run::Phylo::Phylip::Neighbor) perl(Bio::Tools::Run::Phylo::Phylip::ProtDist) perl(Bio::Tools::Run::Phylo::Phylip::ProtPars) perl(Bio::Tools::Run::RemoteBlast) perl(Bio::Tools::SeqStats) perl(Bio::Tools::Sim4::Exon) perl(Bio::Tools::Spidey::Exon) perl(Bio::Tree::AlleleNode) perl(Bio::Tree::AnnotatableNode) perl(Bio::Tree::Compatible) perl(Bio::Tree::Node) perl(Bio::Tree::NodeNHX) perl(Bio::Tree::Tree) perl(Bio::Tree::TreeI) perl(Bio::TreeIO) perl(Bio::TreeIO::TreeEventBuilder) perl(Bio::Variation::AAChange) perl(Bio::Variation::Allele) perl(Bio::Variation::DNAMutation) perl(Bio::Variation::RNAChange) perl(Bio::Variation::SNP) perl(Bio::Variation::SeqDiff) perl(Bio::Variation::VariantI) perl(Bio::WebAgent) perl(CGI) perl(Cache::FileCache) perl(Carp) perl(Clone) perl(Convert::Binary::C) perl(Cwd) perl(DBI) perl(DB_File) perl(Data::Dumper) perl(Data::Stag) perl(Data::Stag::XMLWriter) perl(Digest::MD5) perl(Dumpvalue) perl(English) perl(Env) perl(Error) perl(Exporter) perl(Fcntl) perl(File::Basename) perl(File::Glob) perl(File::Path) perl(File::Spec) perl(File::Spec::Functions) perl(File::Temp) perl(FileHandle) perl(GD) perl(Getopt::Long) perl(Getopt::Std) perl(Graph::Directed) perl(HTML::HeadParser) perl(HTTP::Request) perl(HTTP::Request::Common) perl(HTTP::Response) perl(IO::File) perl(IO::Handle) perl(IO::Pipe) perl(IO::Socket) perl(IO::String) perl(LWP) perl(LWP) >= 5.64 perl(LWP::Simple) perl(LWP::UserAgent) perl(List::Util) perl(Math::BigFloat) perl(Memoize) perl(POSIX) perl(Pod::Usage) perl(PostScript::TextBlock) perl(SVG::Graph) perl(SVG::Graph::Data) perl(SVG::Graph::Data::Node) perl(SVG::Graph::Data::Tree) perl(Scalar::Util) perl(Set::Scalar) perl(Spreadsheet::ParseExcel) perl(Storable) perl(Symbol) perl(Test::Builder) perl(Test::Exception) perl(Test::Warn) perl(Text::Balanced) perl(Text::ParseWords) perl(Text::Wrap) perl(Tie::RefHash) perl(Time::HiRes) perl(Time::Local) perl(Tree::DAG_Node) perl(UNIVERSAL) perl(URI) perl(URI::Escape) perl(XML::DOM) perl(XML::DOM::XPath) perl(XML::LibXML) perl(XML::LibXML::Reader) perl(XML::Parser) perl(XML::Parser::PerlSAX) perl(XML::SAX) perl(XML::SAX::Writer) perl(XML::Simple) perl(XML::Twig) perl(XML::Writer) perl(XML::Writer) >= 0.4 perl(base) perl(constant) perl(integer) perl(lib) perl(overload) perl(strict) perl(vars) perl(warnings) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch warning: Could not canonicalize hostname: x86-7.fedora.phx.redhat.com Wrote: /builddir/build/RPMS/perl-bioperl-1.6.0-1.fc11.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.fWSajm + umask 022 + cd /builddir/build/BUILD + cd BioPerl-1.6.0 + rm -rf /builddir/build/BUILDROOT/perl-bioperl-1.6.0-1.fc11.noarch + exit 0 Child returncode was: 0 LEAVE do -->