ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target noarch --nodeps builddir/build/SPECS/perl-bioperl-run.spec'], False, '/var/lib/mock/dist-f11-build-341373-63272/root/', None, 86400, True, 0, 424, 102, None, logger=<mock.trace_decorator.getLog object at 0x2b72b122fe50>)
Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target noarch --nodeps builddir/build/SPECS/perl-bioperl-run.spec']
warning: Could not canonicalize hostname: xenbuilder4.fedora.phx.redhat.com
Building target platforms: noarch
Building for target noarch
Wrote: /builddir/build/SRPMS/perl-bioperl-run-1.5.9-0.1.1.fc11.src.rpm
Child returncode was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target noarch --nodeps builddir/build/SPECS/perl-bioperl-run.spec'], False, '/var/lib/mock/dist-f11-build-341373-63272/root/', None, 86400, True, 0, 424, 102, None, logger=<mock.trace_decorator.getLog object at 0x2b72b122fe50>)
Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target noarch --nodeps builddir/build/SPECS/perl-bioperl-run.spec']
Building target platforms: noarch
Building for target noarch
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0YiyqA
+ umask 022
+ cd /builddir/build/BUILD
+ LANG=C
+ export LANG
+ unset DISPLAY
+ cd /builddir/build/BUILD
+ rm -rf BioPerl-run-1.5.9._1
+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/BioPerl-run-1.5.9_1.tar.bz2
+ /bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BioPerl-run-1.5.9._1
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ chmod -x INSTALL INSTALL.PROGRAMS
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nytl1I
+ umask 022
+ cd /builddir/build/BUILD
+ cd BioPerl-run-1.5.9._1
+ LANG=C
+ export LANG
+ unset DISPLAY
+ /usr/bin/perl Build.PL --installdirs vendor
    * Could not connect to the internet (http://search.cpan.org/)
Checking whether your kit is complete...
Looks good
Checking prerequisites...
Looks good
Checking features:
  Network....disabled
Install [a]ll Bioperl scripts or [n]one? [a] 
  - will install all scripts
Creating new 'Build' script for 'BioPerl-run' version '1.005009_001'
+ ./Build
Copying Bio/Installer/EMBOSS.pm -> blib/lib/Bio/Installer/EMBOSS.pm
Copying Bio/Tools/Run/Phylo/Hyphy/REL.pm -> blib/lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm
Copying Bio/Tools/Run/Phylo/Molphy/ProtML.pm -> blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
Copying Bio/Installer/Muscle.pm -> blib/lib/Bio/Installer/Muscle.pm
Copying Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
Copying Bio/Tools/Run/EMBOSSacd.pm -> blib/lib/Bio/Tools/Run/EMBOSSacd.pm
Copying Bio/Tools/Run/ERPIN.pm -> blib/lib/Bio/Tools/Run/ERPIN.pm
Copying Bio/Tools/Run/Alignment/DBA.pm -> blib/lib/Bio/Tools/Run/Alignment/DBA.pm
Copying Bio/Tools/Run/Alignment/Sim4.pm -> blib/lib/Bio/Tools/Run/Alignment/Sim4.pm
Copying Bio/Tools/Run/Alignment/Probalign.pm -> blib/lib/Bio/Tools/Run/Alignment/Probalign.pm
Copying Bio/Tools/Run/Phrap.pm -> blib/lib/Bio/Tools/Run/Phrap.pm
Copying Bio/Tools/Run/FootPrinter.pm -> blib/lib/Bio/Tools/Run/FootPrinter.pm
Copying Bio/Tools/Run/Alignment/StandAloneFasta.pm -> blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm
Copying Bio/Tools/Run/Phylo/Hyphy/Base.pm -> blib/lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm
Copying Bio/Tools/Run/Phylo/PhyloBase.pm -> blib/lib/Bio/Tools/Run/Phylo/PhyloBase.pm
Copying Bio/Tools/Run/Match.pm -> blib/lib/Bio/Tools/Run/Match.pm
Copying Bio/Installer/Clustalw.pm -> blib/lib/Bio/Installer/Clustalw.pm
Copying Bio/Tools/Run/Primate.pm -> blib/lib/Bio/Tools/Run/Primate.pm
Copying Bio/Tools/Run/Pseudowise.pm -> blib/lib/Bio/Tools/Run/Pseudowise.pm
Copying Bio/Tools/Run/Phylo/PAML/Codeml.pm -> blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
Copying Bio/Tools/Run/Alignment/Amap.pm -> blib/lib/Bio/Tools/Run/Alignment/Amap.pm
Copying Bio/Tools/Run/Alignment/Blat.pm -> blib/lib/Bio/Tools/Run/Alignment/Blat.pm
Copying Bio/Tools/Run/AnalysisFactory.pm -> blib/lib/Bio/Tools/Run/AnalysisFactory.pm
Copying Bio/Tools/Run/Genscan.pm -> blib/lib/Bio/Tools/Run/Genscan.pm
Copying Bio/Tools/Run/Phylo/Phyml.pm -> blib/lib/Bio/Tools/Run/Phylo/Phyml.pm
Copying Bio/Tools/Run/Infernal.pm -> blib/lib/Bio/Tools/Run/Infernal.pm
Copying Bio/Tools/Run/Simprot.pm -> blib/lib/Bio/Tools/Run/Simprot.pm
Copying Bio/Tools/Run/Analysis/soap.pm -> blib/lib/Bio/Tools/Run/Analysis/soap.pm
Copying Bio/Tools/Run/MCS.pm -> blib/lib/Bio/Tools/Run/MCS.pm
Copying Bio/Tools/Run/Alignment/Muscle.pm -> blib/lib/Bio/Tools/Run/Alignment/Muscle.pm
Copying Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
Copying Bio/Tools/Run/Coil.pm -> blib/lib/Bio/Tools/Run/Coil.pm
Copying Bio/Tools/Run/Phylo/Phylip/ProtPars.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
Copying Bio/Installer/SLR.pm -> blib/lib/Bio/Installer/SLR.pm
Copying Bio/Tools/Run/Phylo/Phylip/DrawTree.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
Copying Bio/Tools/Run/Analysis.pm -> blib/lib/Bio/Tools/Run/Analysis.pm
Copying Bio/Tools/Run/Phylo/Phylip/Neighbor.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
Copying Bio/Tools/Run/AnalysisFactory/soap.pm -> blib/lib/Bio/Tools/Run/AnalysisFactory/soap.pm
Copying Bio/Tools/Run/Prints.pm -> blib/lib/Bio/Tools/Run/Prints.pm
Copying Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm -> blib/lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
Copying Bio/Tools/Run/Phylo/PAML/Baseml.pm -> blib/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
Copying Bio/Tools/Run/Alignment/Pal2Nal.pm -> blib/lib/Bio/Tools/Run/Alignment/Pal2Nal.pm
Copying Bio/Tools/Run/Hmmer.pm -> blib/lib/Bio/Tools/Run/Hmmer.pm
Copying Bio/Tools/Run/Alignment/Probcons.pm -> blib/lib/Bio/Tools/Run/Alignment/Probcons.pm
Copying Bio/Installer/Probcons.pm -> blib/lib/Bio/Installer/Probcons.pm
Copying Bio/Tools/Run/Phylo/SLR.pm -> blib/lib/Bio/Tools/Run/Phylo/SLR.pm
Copying Bio/Tools/Run/Alignment/Clustalw.pm -> blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm
Copying Bio/Tools/Run/Alignment/Kalign.pm -> blib/lib/Bio/Tools/Run/Alignment/Kalign.pm
Copying Bio/Installer/TCoffee.pm -> blib/lib/Bio/Installer/TCoffee.pm
Copying Bio/Tools/Run/Vista.pm -> blib/lib/Bio/Tools/Run/Vista.pm
Copying Bio/Tools/Run/TigrAssembler.pm -> blib/lib/Bio
/Tools/Run/TigrAssembler.pm
Copying Bio/Installer/Hyphy.pm -> blib/lib/Bio/Installer/Hyphy.pm
Copying Bio/Tools/Run/Alignment/MAFFT.pm -> blib/lib/Bio/Tools/Run/Alignment/MAFFT.pm
Copying Bio/Tools/Run/Eponine.pm -> blib/lib/Bio/Tools/Run/Eponine.pm
Copying Bio/Tools/Run/TribeMCL.pm -> blib/lib/Bio/Tools/Run/TribeMCL.pm
Copying Bio/Tools/Run/Promoterwise.pm -> blib/lib/Bio/Tools/Run/Promoterwise.pm
Copying Bio/Tools/Run/Phylo/Phast/PhastCons.pm -> blib/lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
Copying Bio/Tools/Run/Phylo/Njtree/Best.pm -> blib/lib/Bio/Tools/Run/Phylo/Njtree/Best.pm
Copying Bio/Tools/Run/Phylo/LVB.pm -> blib/lib/Bio/Tools/Run/Phylo/LVB.pm
Copying Bio/Tools/Run/tRNAscanSE.pm -> blib/lib/Bio/Tools/Run/tRNAscanSE.pm
Copying Bio/Tools/Run/Alignment/TCoffee.pm -> blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm
Copying Bio/Tools/Run/Phylo/Phylip/Consense.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm
Copying Bio/Tools/Run/Phylo/Hyphy/FEL.pm -> blib/lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
Copying Bio/Tools/Run/Cap3.pm -> blib/lib/Bio/Tools/Run/Cap3.pm
Copying Bio/Tools/Run/Phylo/Phylip/ProtDist.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
Copying Bio/Tools/Run/Glimmer.pm -> blib/lib/Bio/Tools/Run/Glimmer.pm
Copying Bio/Tools/Run/EMBOSSApplication.pm -> blib/lib/Bio/Tools/Run/EMBOSSApplication.pm
Copying Bio/Installer/Generic.pm -> blib/lib/Bio/Installer/Generic.pm
Copying Bio/Tools/Run/Signalp.pm -> blib/lib/Bio/Tools/Run/Signalp.pm
Copying Bio/Tools/Run/Phylo/Hyphy/SLAC.pm -> blib/lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
Copying Bio/Tools/Run/Alignment/Lagan.pm -> blib/lib/Bio/Tools/Run/Alignment/Lagan.pm
Copying Bio/Tools/Run/Meme.pm -> blib/lib/Bio/Tools/Run/Meme.pm
Copying Bio/Tools/Run/Phylo/Semphy.pm -> blib/lib/Bio/Tools/Run/Phylo/Semphy.pm
Copying Bio/Tools/Run/Phylo/Phylip/DrawGram.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
Copying Bio/Tools/Run/Phylo/Gerp.pm -> blib/lib/Bio/Tools/Run/Phylo/Gerp.pm
Copying Bio/Tools/Run/RNAMotif.pm -> blib/lib/Bio/Tools/Run/RNAMotif.pm
Copying Bio/Tools/Run/Seg.pm -> blib/lib/Bio/Tools/Run/Seg.pm
Copying Bio/Tools/Run/Phylo/PAML/Evolver.pm -> blib/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
Copying Bio/Installer/PAML.pm -> blib/lib/Bio/Installer/PAML.pm
Copying Bio/Tools/Run/Genemark.pm -> blib/lib/Bio/Tools/Run/Genemark.pm
Copying Bio/Tools/Run/Mdust.pm -> blib/lib/Bio/Tools/Run/Mdust.pm
Copying Bio/Tools/Run/Alignment/Proda.pm -> blib/lib/Bio/Tools/Run/Alignment/Proda.pm
Copying Bio/Factory/EMBOSS.pm -> blib/lib/Bio/Factory/EMBOSS.pm
Copying Bio/Tools/Run/Phylo/Phylip/Base.pm -> blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm
Copying Bio/Tools/Run/RepeatMasker.pm -> blib/lib/Bio/Tools/Run/RepeatMasker.pm
Copying Bio/Tools/Run/Genewise.pm -> blib/lib/Bio/Tools/Run/Genewise.pm
Copying Bio/Tools/Run/Phylo/PAML/Yn00.pm -> blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
Copying Bio/Tools/Run/Profile.pm -> blib/lib/Bio/Tools/Run/Profile.pm
Copying Bio/Tools/Run/Phylo/Phast/PhyloFit.pm -> blib/lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
Copying Bio/Tools/Run/Phylo/Gumby.pm -> blib/lib/Bio/Tools/Run/Phylo/Gumby.pm
Copying Bio/Tools/Run/Tmhmm.pm -> blib/lib/Bio/Tools/Run/Tmhmm.pm
Copying Bio/Tools/Run/Phylo/QuickTree.pm -> blib/lib/Bio/Tools/Run/Phylo/QuickTree.pm
Copying Bio/Tools/Run/Ensembl.pm -> blib/lib/Bio/Tools/Run/Ensembl.pm
Copying Bio/Tools/Run/Alignment/Exonerate.pm -> blib/lib/Bio/Tools/Run/Alignment/Exonerate.pm
Copying Bio/Tools/Run/Primer3.pm -> blib/lib/Bio/Tools/Run/Primer3.pm
Copying scripts/papplmaker.PLS -> blib/script/papplmaker.PLS
Deleting blib/script/papplmaker.PLS.bak
blib/script/papplmaker.PLS -> blib/script/bp_papplmaker.pl
Copying scripts/run_neighbor.PLS -> blib/script/run_neighbor.PLS
Deleting blib/script/run_neighbor.PLS.bak
blib/script/run_neighbor.PLS -> blib/script/bp_run_neighbor.pl
Copying scripts/multi_hmmsearch.PLS -> blib/script/multi_hmmsearch.PLS
Deleting blib/script/multi_hmmsearch.PLS.bak
blib/script/multi_hmmsearch.PLS -> blib/script/bp_multi_hmmsearch.pl
Copying scripts/panalysis.PLS -> blib/script/panalysis.PLS
Deleting blib/scri
pt/panalysis.PLS.bak
blib/script/panalysis.PLS -> blib/script/bp_panalysis.pl
Copying scripts/bioperl_application_installer.PLS -> blib/script/bioperl_application_installer.PLS
Deleting blib/script/bioperl_application_installer.PLS.bak
blib/script/bioperl_application_installer.PLS -> blib/script/bp_bioperl_application_installer.pl
Copying scripts/run_protdist.PLS -> blib/script/run_protdist.PLS
Deleting blib/script/run_protdist.PLS.bak
blib/script/run_protdist.PLS -> blib/script/bp_run_protdist.pl
Writing config notes to blib/lib/Bio/ConfigData.pm
Manifying blib/script/bp_papplmaker.pl -> blib/bindoc/bp_papplmaker.pl.1
Manifying blib/script/bp_bioperl_application_installer.pl -> blib/bindoc/bp_bioperl_application_installer.pl.1
Manifying blib/script/bp_panalysis.pl -> blib/bindoc/bp_panalysis.pl.1
Manifying blib/script/bp_run_neighbor.pl -> blib/bindoc/bp_run_neighbor.pl.1
Manifying blib/script/bp_run_protdist.pl -> blib/bindoc/bp_run_protdist.pl.1
Manifying blib/script/bp_multi_hmmsearch.pl -> blib/bindoc/bp_multi_hmmsearch.pl.1
Manifying blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm -> blib/libdoc/Bio::Tools::Run::Phylo::PAML::Codeml.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::DrawGram.3pm
Manifying blib/lib/Bio/Tools/Run/Simprot.pm -> blib/libdoc/Bio::Tools::Run::Simprot.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phyml.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phyml.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/LVB.pm -> blib/libdoc/Bio::Tools::Run::Phylo::LVB.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Amap.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Amap.3pm
Manifying blib/lib/Bio/Tools/Run/Tmhmm.pm -> blib/libdoc/Bio::Tools::Run::Tmhmm.3pm
Manifying blib/lib/Bio/Tools/Run/TigrAssembler.pm -> blib/libdoc/Bio::Tools::Run::TigrAssembler.3pm
Manifying blib/lib/Bio/Installer/Muscle.pm -> blib/libdoc/Bio::Installer::Muscle.3pm
Manifying blib/lib/Bio/ConfigData.pm -> blib/libdoc/Bio::ConfigData.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm -> blib/libdoc/Bio::Tools::Run::Phylo::PAML::Baseml.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::Base.3pm
Manifying blib/lib/Bio/Installer/Probcons.pm -> blib/libdoc/Bio::Installer::Probcons.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Exonerate.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Exonerate.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/MAFFT.pm -> blib/libdoc/Bio::Tools::Run::Alignment::MAFFT.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm -> blib/libdoc/Bio::Tools::Run::Alignment::TCoffee.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Sim4.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Sim4.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm -> blib/libdoc/Bio::Tools::Run::Phylo::PAML::Yn00.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Clustalw.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Molphy::ProtML.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Hyphy::Base.3pm
Manifying blib/lib/Bio/Tools/Run/Analysis.pm -> blib/libdoc/Bio::Tools::Run::Analysis.3pm
Manifying blib/lib/Bio/Tools/Run/Meme.pm -> blib/libdoc/Bio::Tools::Run::Meme.3pm
Manifying blib/lib/Bio/Tools/Run/Prints.pm -> blib/libdoc/Bio::Tools::Run::Prints.3pm
Manifying blib/lib/Bio/Tools/Run/MCS.pm -> blib/libdoc/Bio::Tools::Run::MCS.3pm
Manifying blib/lib/Bio/Tools/Run/Eponine.pm -> blib/libdoc/Bio::Tools::Run::Eponine.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Kalign.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Kalign.3pm
Manifying blib/lib/Bio/Tools/Run/TribeMCL.pm -> blib/libdoc/Bio::Tools::Run::TribeMCL.3pm
Manifying blib/lib/Bio/Tools/Run/Analysis/soap.pm -> blib/libdoc/Bio::Tools::Run::Analysis::soap.3pm
Manifying blib/lib/Bio/Factory/EMBOSS.pm -> blib/libdoc/Bio::Factory::EMBOSS.3pm
Manifying blib/lib/Bio/Installer/Clustalw.pm -> blib/libdoc/Bio::Installer::Clustalw.3pm
Manifying blib/lib/Bio/Tools
/Run/Seg.pm -> blib/libdoc/Bio::Tools::Run::Seg.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Probcons.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Probcons.3pm
Manifying blib/lib/Bio/Tools/Run/RepeatMasker.pm -> blib/libdoc/Bio::Tools::Run::RepeatMasker.3pm
Manifying blib/lib/Bio/Installer/TCoffee.pm -> blib/libdoc/Bio::Installer::TCoffee.3pm
Manifying blib/lib/Bio/Tools/Run/AnalysisFactory.pm -> blib/libdoc/Bio::Tools::Run::AnalysisFactory.3pm
Manifying blib/lib/Bio/Tools/Run/Cap3.pm -> blib/libdoc/Bio::Tools::Run::Cap3.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Blat.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Blat.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/PhyloBase.pm -> blib/libdoc/Bio::Tools::Run::Phylo::PhyloBase.3pm
Manifying blib/lib/Bio/Tools/Run/Coil.pm -> blib/libdoc/Bio::Tools::Run::Coil.3pm
Manifying blib/lib/Bio/Tools/Run/Promoterwise.pm -> blib/libdoc/Bio::Tools::Run::Promoterwise.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Pal2Nal.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Pal2Nal.3pm
Manifying blib/lib/Bio/Tools/Run/ERPIN.pm -> blib/libdoc/Bio::Tools::Run::ERPIN.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm -> blib/libdoc/Bio::Tools::Run::Phylo::PAML::Evolver.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Hyphy::REL.3pm
Manifying blib/lib/Bio/Tools/Run/Genscan.pm -> blib/libdoc/Bio::Tools::Run::Genscan.3pm
Manifying blib/lib/Bio/Tools/Run/EMBOSSApplication.pm -> blib/libdoc/Bio::Tools::Run::EMBOSSApplication.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3pm
Manifying blib/lib/Bio/Tools/Run/Match.pm -> blib/libdoc/Bio::Tools::Run::Match.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Gumby.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Gumby.3pm
Manifying blib/lib/Bio/Tools/Run/Vista.pm -> blib/libdoc/Bio::Tools::Run::Vista.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Hyphy::SLAC.3pm
Manifying blib/lib/Bio/Tools/Run/Mdust.pm -> blib/libdoc/Bio::Tools::Run::Mdust.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Proda.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Proda.3pm
Manifying blib/lib/Bio/Installer/SLR.pm -> blib/libdoc/Bio::Installer::SLR.3pm
Manifying blib/lib/Bio/Tools/Run/Primate.pm -> blib/libdoc/Bio::Tools::Run::Primate.3pm
Manifying blib/lib/Bio/Tools/Run/Infernal.pm -> blib/libdoc/Bio::Tools::Run::Infernal.3pm
Manifying blib/lib/Bio/Tools/Run/Genemark.pm -> blib/libdoc/Bio::Tools::Run::Genemark.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm
Manifying blib/lib/Bio/Tools/Run/EMBOSSacd.pm -> blib/libdoc/Bio::Tools::Run::EMBOSSacd.3pm
Manifying blib/lib/Bio/Tools/Run/AnalysisFactory/soap.pm -> blib/libdoc/Bio::Tools::Run::AnalysisFactory::soap.3pm
Manifying blib/lib/Bio/Tools/Run/Hmmer.pm -> blib/libdoc/Bio::Tools::Run::Hmmer.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Lagan.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Lagan.3pm
Manifying blib/lib/Bio/Installer/EMBOSS.pm -> blib/libdoc/Bio::Installer::EMBOSS.3pm
Manifying blib/lib/Bio/Tools/Run/Phrap.pm -> blib/libdoc/Bio::Tools::Run::Phrap.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Muscle.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Muscle.3pm
Manifying blib/lib/Bio/Tools/Run/tRNAscanSE.pm -> blib/libdoc/Bio::Tools::Run::tRNAscanSE.3pm
Manifying blib/lib/Bio/Tools/Run/Glimmer.pm -> blib/libdoc/Bio::Tools::Run::Glimmer.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm
Manifying blib/lib/Bio/Installer/PAML.pm -> blib/libdoc/Bio::Installer::PAML.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phast::PhastCons.3pm
Manifying blib/
lib/Bio/Tools/Run/Signalp.pm -> blib/libdoc/Bio::Tools::Run::Signalp.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm
Manifying blib/lib/Bio/Installer/Generic.pm -> blib/libdoc/Bio::Installer::Generic.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::DrawTree.3pm
Manifying blib/lib/Bio/Installer/Hyphy.pm -> blib/libdoc/Bio::Installer::Hyphy.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/SLR.pm -> blib/libdoc/Bio::Tools::Run::Phylo::SLR.3pm
Manifying blib/lib/Bio/Tools/Run/FootPrinter.pm -> blib/libdoc/Bio::Tools::Run::FootPrinter.3pm
Manifying blib/lib/Bio/Tools/Run/Genewise.pm -> blib/libdoc/Bio::Tools::Run::Genewise.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm
Manifying blib/lib/Bio/Tools/Run/RNAMotif.pm -> blib/libdoc/Bio::Tools::Run::RNAMotif.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm -> blib/libdoc/Bio::Tools::Run::Alignment::StandAloneFasta.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/Probalign.pm -> blib/libdoc/Bio::Tools::Run::Alignment::Probalign.3pm
Manifying blib/lib/Bio/Tools/Run/Primer3.pm -> blib/libdoc/Bio::Tools::Run::Primer3.3pm
Manifying blib/lib/Bio/Tools/Run/Profile.pm -> blib/libdoc/Bio::Tools::Run::Profile.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Njtree/Best.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Njtree::Best.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/QuickTree.pm -> blib/libdoc/Bio::Tools::Run::Phylo::QuickTree.3pm
Manifying blib/lib/Bio/Tools/Run/Alignment/DBA.pm -> blib/libdoc/Bio::Tools::Run::Alignment::DBA.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Phylip::Consense.3pm
Manifying blib/lib/Bio/Tools/Run/Pseudowise.pm -> blib/libdoc/Bio::Tools::Run::Pseudowise.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Semphy.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Semphy.3pm
Manifying blib/lib/Bio/Tools/Run/Ensembl.pm -> blib/libdoc/Bio::Tools::Run::Ensembl.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Gerp.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Gerp.3pm
Manifying blib/lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm -> blib/libdoc/Bio::Tools::Run::Phylo::Hyphy::FEL.3pm
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SIYnTK
+ umask 022
+ cd /builddir/build/BUILD
+ cd BioPerl-run-1.5.9._1
+ LANG=C
+ export LANG
+ unset DISPLAY
+ rm -rf /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch
+ perl Build pure_install --destdir=/builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch
Copying scripts/papplmaker.PLS -> blib/script/papplmaker.PLS
Deleting blib/script/papplmaker.PLS.bak
blib/script/papplmaker.PLS -> blib/script/bp_papplmaker.pl
Copying scripts/run_neighbor.PLS -> blib/script/run_neighbor.PLS
Deleting blib/script/run_neighbor.PLS.bak
blib/script/run_neighbor.PLS -> blib/script/bp_run_neighbor.pl
Copying scripts/multi_hmmsearch.PLS -> blib/script/multi_hmmsearch.PLS
Deleting blib/script/multi_hmmsearch.PLS.bak
blib/script/multi_hmmsearch.PLS -> blib/script/bp_multi_hmmsearch.pl
Copying scripts/panalysis.PLS -> blib/script/panalysis.PLS
Deleting blib/script/panalysis.PLS.bak
blib/script/panalysis.PLS -> blib/script/bp_panalysis.pl
Copying scripts/bioperl_application_installer.PLS -> blib/script/bioperl_application_installer.PLS
Deleting blib/script/bioperl_application_installer.PLS.bak
blib/script/bioperl_application_installer.PLS -> blib/script/bp_bioperl_application_installer.pl
Copying scripts/run_protdist.PLS -> blib/script/run_protdist.PLS
Deleting blib/script/run_protdist.PLS.bak
blib/script/run_protdist.PLS -> blib/script/bp_run_protdist.pl
Manifying blib/script/bp_papplmaker.pl -> blib/bindoc/bp_papplmaker.pl.1
Manifying blib/script/bp_bioperl_application_installer.pl -> blib/bindoc/bp_bioperl_application_installer.pl.1
Manifying blib/script/bp_panalysis.pl -> blib/bindoc/bp_panalysis.pl.1
Manifying blib/script/bp_run_neighbor.pl -> blib/bindoc/bp_run_neighbor.pl.1
Manifying blib/script/bp_run_protdist.pl -> blib/bindoc/bp_run_protdist.pl.1
Manifying blib/script/bp_multi_hmmsearch.pl -> blib/bindoc/bp_multi_hmmsearch.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man1/bp_papplmaker.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man1/bp_bioperl_application_installer.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man1/bp_panalysis.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man1/bp_run_neighbor.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man1/bp_run_protdist.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man1/bp_multi_hmmsearch.pl.1
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/ConfigData.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/EMBOSS.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/Muscle.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/Clustalw.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/SLR.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/Probcons.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/TCoffee.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/Hyphy.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/Generic.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Installer/PAML.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/EMBOSSacd.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/ERPIN.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phrap.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/FootPrinter.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Match.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Primate.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Pseudowise.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/AnalysisFactory.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Genscan.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Infernal.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Simprot.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/MCS.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Coil.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Analysis.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tool
s/Run/Prints.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Hmmer.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Vista.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/TigrAssembler.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Eponine.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/TribeMCL.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Promoterwise.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/tRNAscanSE.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Cap3.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Glimmer.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/EMBOSSApplication.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Signalp.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Meme.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/RNAMotif.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Seg.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Genemark.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Mdust.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/RepeatMasker.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Genewise.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Profile.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Tmhmm.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Ensembl.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Primer3.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/PhyloBase.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phyml.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/SLR.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/LVB.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Semphy.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Gerp.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Gumby.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/v
endor_perl/5.10.0/Bio/Tools/Run/Phylo/QuickTree.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Hyphy/REL.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Hyphy/Base.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/Consense.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phylip/Base.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/PAML/Codeml.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/PAML/Baseml.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/PAML/Evolver.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/PAML/Yn00.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Phylo/Njtree/Best.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/DBA.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Sim4.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Probalign.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/StandAloneFasta.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Amap.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.
1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Blat.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Muscle.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Pal2Nal.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Probcons.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Clustalw.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Kalign.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/MAFFT.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/TCoffee.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Lagan.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Proda.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Alignment/Exonerate.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/Analysis/soap.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools/Run/AnalysisFactory/soap.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory/EMBOSS.pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawGram.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Simprot.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::LVB.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Amap.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Tmhmm.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::TigrAssembler.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::Muscle.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::ConfigData.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Base.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::Probcons.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::MAFFT.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::TCoffee.3pm
Installing /builddir/build/
BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Sim4.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Clustalw.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Molphy::ProtML.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::Base.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Analysis.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Meme.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Prints.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::MCS.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Eponine.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Kalign.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Factory::EMBOSS.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::Clustalw.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Seg.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Probcons.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::RepeatMasker.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::TCoffee.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Cap3.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Coil.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Promoterwise.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Pal2Nal.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::REL.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Genscan.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::EMBOSSApplication.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Match.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Gumby.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Vista.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::SLAC.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Mdust.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Proda.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::SLR.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Primate.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Infernal.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Genemark.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory::soap.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Lagan.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::EMBOSS.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phrap.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Muscle.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::tRNAscanSE.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Glimmer.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::PAML.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhastCons.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Signalp.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::Generic.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawTree.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Installer::Hyphy.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bi
o::Tools::Run::Phylo::SLR.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::FootPrinter.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Genewise.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::RNAMotif.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::Probalign.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Primer3.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Profile.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Njtree::Best.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::QuickTree.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Alignment::DBA.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Consense.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Pseudowise.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Semphy.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Ensembl.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Gerp.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::FEL.3pm
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/bin/bp_papplmaker.pl
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/bin/bp_run_neighbor.pl
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/bin/bp_panalysis.pl
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/bin/bp_multi_hmmsearch.pl
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/bin/bp_run_protdist.pl
Installing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/bin/bp_bioperl_application_installer.pl
Writing /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/lib/perl5/vendor_perl/5.10.0/i386-linux-thread-multi/auto/Bio/.packlist
+ find /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch -type f -a '(' -name .packlist -o '(' -name '*.bs' -a -empty ')' ')' -exec rm -f '{}' ';'
+ find /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch -type f -name '*.pm' -exec chmod -x '{}' ';'
+ find /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch//usr/bin -type f -name '*.pl' -exec chmod 0755 '{}' ';'
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/BioPerl-run-1.5.9._1
find: `debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/brp-python-bytecompile
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.SjuR8M
+ umask 022
+ cd /builddir/build/BUILD
Processing files: perl-bioperl-run-1.5.9-0.1.1.fc11
+ cd BioPerl-run-1.5.9._1
+ unset DISPLAY
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.s3aDjS
+ umask 022
+ cd /builddir/build/BUILD
+ cd BioPerl-run-1.5.9._1
+ DOCDIR=/builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/doc/perl-bioperl-run-1.5.9
+ export DOCDIR
+ rm -rf /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/doc/perl-bioperl-run-1.5.9
+ /bin/mkdir -p /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/doc/perl-bioperl-run-1.5.9
+ cp -pr AUTHORS Changes INSTALL INSTALL.PROGRAMS README /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch/usr/share/doc/perl-bioperl-run-1.5.9
+ exit 0
Provides: perl(Bio::ConfigData) perl(Bio::Factory::EMBOSS) perl(Bio::Installer::Clustalw) perl(Bio::Installer::EMBOSS) perl(Bio::Installer::Generic) perl(Bio::Installer::Hyphy) perl(Bio::Installer::Muscle) perl(Bio::Installer::PAML) perl(Bio::Installer::Probcons) perl(Bio::Installer::SLR) perl(Bio::Installer::TCoffee) perl(Bio::Tools::Run::Alignment::Amap) perl(Bio::Tools::Run::Alignment::Blat) perl(Bio::Tools::Run::Alignment::Clustalw) perl(Bio::Tools::Run::Alignment::DBA) perl(Bio::Tools::Run::Alignment::Exonerate) perl(Bio::Tools::Run::Alignment::Kalign) perl(Bio::Tools::Run::Alignment::Lagan) perl(Bio::Tools::Run::Alignment::MAFFT) perl(Bio::Tools::Run::Alignment::Muscle) perl(Bio::Tools::Run::Alignment::Pal2Nal) perl(Bio::Tools::Run::Alignment::Probalign) perl(Bio::Tools::Run::Alignment::Probcons) perl(Bio::Tools::Run::Alignment::Proda) perl(Bio::Tools::Run::Alignment::Sim4) perl(Bio::Tools::Run::Alignment::StandAloneFasta) perl(Bio::Tools::Run::Alignment::TCoffee)
 perl(Bio::Tools::Run::Analysis) perl(Bio::Tools::Run::Analysis::Job) perl(Bio::Tools::Run::Analysis::Job::soap) perl(Bio::Tools::Run::Analysis::Utils) perl(Bio::Tools::Run::Analysis::soap) perl(Bio::Tools::Run::AnalysisFactory) perl(Bio::Tools::Run::AnalysisFactory::soap) perl(Bio::Tools::Run::Cap3) perl(Bio::Tools::Run::Coil) perl(Bio::Tools::Run::EMBOSSApplication) perl(Bio::Tools::Run::EMBOSSacd) perl(Bio::Tools::Run::ERPIN) perl(Bio::Tools::Run::Ensembl) perl(Bio::Tools::Run::Eponine) perl(Bio::Tools::Run::FootPrinter) perl(Bio::Tools::Run::Genemark) perl(Bio::Tools::Run::Genewise) perl(Bio::Tools::Run::Genscan) perl(Bio::Tools::Run::Glimmer) perl(Bio::Tools::Run::Hmmer) perl(Bio::Tools::Run::Infernal) perl(Bio::Tools::Run::MCS) perl(Bio::Tools::Run::Match) perl(Bio::Tools::Run::Mdust) perl(Bio::Tools::Run::Meme) perl(Bio::Tools::Run::Phrap) perl(Bio::Tools::Run::Phylo::Gerp) perl(Bio::Tools::Run::Phylo::Gumby) perl(Bio::Tools::Run::Phylo::Hyphy::Base) perl(Bio::Tools::Run::Phylo::Hyphy::FEL) perl(Bio::Tools::Run::Phylo::Hyphy::Modeltest) perl(Bio::Tools::Run::Phylo::Hyphy::REL) perl(Bio::Tools::Run::Phylo::Hyphy::SLAC) perl(Bio::Tools::Run::Phylo::LVB) perl(Bio::Tools::Run::Phylo::Molphy::ProtML) perl(Bio::Tools::Run::Phylo::Njtree::Best) perl(Bio::Tools::Run::Phylo::PAML::Baseml) perl(Bio::Tools::Run::Phylo::PAML::Codeml) perl(Bio::Tools::Run::Phylo::PAML::Evolver) perl(Bio::Tools::Run::Phylo::PAML::Yn00) perl(Bio::Tools::Run::Phylo::Phast::PhastCons) perl(Bio::Tools::Run::Phylo::Phast::PhyloFit) perl(Bio::Tools::Run::Phylo::Phylip::Base) perl(Bio::Tools::Run::Phylo::Phylip::Consense) perl(Bio::Tools::Run::Phylo::Phylip::DrawGram) perl(Bio::Tools::Run::Phylo::Phylip::DrawTree) perl(Bio::Tools::Run::Phylo::Phylip::Neighbor) perl(Bio::Tools::Run::Phylo::Phylip::PhylipConf) perl(Bio::Tools::Run::Phylo::Phylip::ProtDist) perl(Bio::Tools::Run::Phylo::Phylip::ProtPars) perl(Bio::Tools::Run::Phylo::Phylip::SeqBoot) perl(Bio::Tools::Run::Phylo::PhyloBase) perl(Bio::Tools::Run::Phylo::Phyml) perl(Bio::Tools::Run::Phylo::QuickTree) perl(Bio::Tools::Run::Phylo::SLR) perl(Bio::Tools::Run::Phylo::Semphy) perl(Bio::Tools::Run::Primate) perl(Bio::Tools::Run::Primer3) perl(Bio::Tools::Run::Prints) perl(Bio::Tools::Run::Profile) perl(Bio::Tools::Run::Promoterwise) perl(Bio::Tools::Run::Pseudowise) perl(Bio::Tools::Run::RNAMotif) perl(Bio::Tools::Run::RepeatMasker) perl(Bio::Tools::Run::Seg) perl(Bio::Tools::Run::Signalp) perl(Bio::Tools::Run::Simprot) perl(Bio::Tools::Run::TigrAssembler) perl(Bio::Tools::Run::Tmhmm) perl(Bio::Tools::Run::TribeMCL) perl(Bio::Tools::Run::Vista) perl(Bio::Tools::Run::tRNAscanSE)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl perl >= 0:5.005_62 perl(Bio::AlignIO) perl(Bio::AnalysisI) perl(Bio::Annotation::DBLink) perl(Bio::Annotation::SimpleValue) perl(Bio::Assembly::IO) perl(Bio::Cluster::SequenceFamily) perl(Bio::DB::EUtilities) perl(Bio::Factory::AnalysisI) perl(Bio::Factory::ApplicationFactoryI) perl(Bio::Factory::ObjectFactory) perl(Bio::FeatureIO) perl(Bio::Installer::Generic) perl(Bio::Map::Position) perl(Bio::Map::Prediction) perl(Bio::Matrix::IO) perl(Bio::Matrix::PhylipDist) perl(Bio::Root::IO) perl(Bio::Root::Root) perl(Bio::Search::HSP::GenericHSP) perl(Bio::SearchIO) perl(Bio::Seq) perl(Bio::SeqFeature::FeaturePair) perl(Bio::SeqFeature::Gene::Exon) perl(Bio::SeqFeature::Gene::GeneStructure) perl(Bio::SeqFeature::Gene::Transcript) perl(Bio::SeqFeature::Generic) perl(Bio::SeqIO) perl(Bio::SimpleAlign) perl(Bio::Species) perl(Bio::Tools::AnalysisResult) perl(Bio::Tools::Coil) perl(Bio::Tools::Eponine) perl(Bio::Tools::FootPrinter) perl(Bio::Tools::GFF) perl(Bio::Tools::Genemark) perl(Bio::Tools::Genewise) perl(Bio::Tools::Genscan) perl(Bio::Tools::Glimmer) perl(Bio::Tools::Match) perl(Bio::Tools::Phylo::Gerp) perl(Bio::Tools::Phylo::Gumby) perl(Bio::Tools::Phylo::Molphy) perl(Bio::Tools::Phylo::PAML) perl(Bio::Tools::Phylo::Phylip::ProtDist) perl(Bio::Tools::Primer3) perl(Bio::Tools::Prints) perl(Bio::Tools::Profile) perl(Bio::Tools::Promoterwise) perl(Bio::Tools::Pseudowise) perl(Bio::Tools::RepeatMasker) perl(Bio::Tools::Run::Analysis) perl(Bio::Tools::Run::AnalysisFactory) perl(Bio::Tools::Run::EMBOSSApplication) perl(Bio::Tools::Run::EMBOSSacd) perl(Bio::Tools::Run::Phylo::Hyphy::Base) perl(Bio::Tools::Run::Phylo::Phast::PhyloFit) perl(Bio::Tools::Run::Phylo::Phylip::Base) perl(Bio::Tools::Run::Phylo::Phylip::Neighbor) perl(Bio::Tools::Run::Phylo::Phylip::PhylipConf) perl(Bio::Tools::Run::Phylo::Phylip::ProtDist) perl(Bio::Tools::Run::WrapperBase) perl(Bio::Tools::Seg) perl(Bio::Tools::Signalp) perl(Bio::Tools::Sim4::Results) perl(Bio::Tools::Tmhmm) perl(Bio::Tools::tRNAscanSE) perl(Bio::TreeIO) perl(Bio::WebAgent) perl(Clone) perl(Config) perl(Cwd) perl(Data::Dumper) perl(English) perl(Exporter) perl(ExtUtils::MakeMaker) perl(File::Basename) perl(File::Copy) perl(File::Spec) perl(Getopt::Long)
 perl(Getopt::Std) perl(HTTP::Request::Common) perl(IO::String) perl(IPC::Run) perl(LWP) perl(base) perl(strict) perl(vars) perl(warnings)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch
warning: Could not canonicalize hostname: xenbuilder4.fedora.phx.redhat.com
Wrote: /builddir/build/RPMS/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.yhtPjJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd BioPerl-run-1.5.9._1
+ rm -rf /builddir/build/BUILDROOT/perl-bioperl-run-1.5.9-0.1.1.fc11.noarch
+ exit 0
Child returncode was: 0
LEAVE do -->